Matching samples

GSE207022 · Efficacy and safety of ustekinumab treatment in patients with Crohn's disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

78 case / 70 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (148)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM6268367

Uncertain

CNTO1275CRD3002-20554 rectum biopsy week 0

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • CNTO1275CRD3002-20554 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20554; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
        • CNTO1275CRD3002-20554 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20554; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • CNTO1275CRD3002-20554 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20554; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
          • CNTO1275CRD3002-20554 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20554; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
        Source metadata
        Source name
        rectum biopsy
        Characteristics
        tissue: rectum; donor id: CNTO1275CRD3002-20554; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM6268367
        sample_title: CNTO1275CRD3002-20554 rectum biopsy week 0
        source_name: rectum biopsy
        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20554; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

        GSM6268368

        Uncertain

        CNTO1275CRD3002-20667 rectum biopsy week 0

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • CNTO1275CRD3002-20667 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20667; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
              • CNTO1275CRD3002-20667 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20667; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • CNTO1275CRD3002-20667 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20667; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                • CNTO1275CRD3002-20667 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20667; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
              Source metadata
              Source name
              rectum biopsy
              Characteristics
              tissue: rectum; donor id: CNTO1275CRD3002-20667; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM6268368
              sample_title: CNTO1275CRD3002-20667 rectum biopsy week 0
              source_name: rectum biopsy
              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20667; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

              GSM6268369

              Uncertain

              CNTO1275CRD3002-20449 rectum biopsy week 0

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • CNTO1275CRD3002-20449 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20449; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                    • CNTO1275CRD3002-20449 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20449; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • CNTO1275CRD3002-20449 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20449; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                      • CNTO1275CRD3002-20449 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20449; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                    Source metadata
                    Source name
                    rectum biopsy
                    Characteristics
                    tissue: rectum; donor id: CNTO1275CRD3002-20449; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM6268369
                    sample_title: CNTO1275CRD3002-20449 rectum biopsy week 0
                    source_name: rectum biopsy
                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20449; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                    GSM6268370

                    Uncertain

                    CNTO1275CRD3002-20927 rectum biopsy week 0

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • CNTO1275CRD3002-20927 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20927; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                          • CNTO1275CRD3002-20927 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20927; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • CNTO1275CRD3002-20927 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20927; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                            • CNTO1275CRD3002-20927 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20927; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                          Source metadata
                          Source name
                          rectum biopsy
                          Characteristics
                          tissue: rectum; donor id: CNTO1275CRD3002-20927; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM6268370
                          sample_title: CNTO1275CRD3002-20927 rectum biopsy week 0
                          source_name: rectum biopsy
                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20927; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                          GSM6268371

                          Uncertain

                          CNTO1275CRD3002-20270 rectum biopsy week 0

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • CNTO1275CRD3002-20270 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20270; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                • CNTO1275CRD3002-20270 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20270; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • CNTO1275CRD3002-20270 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20270; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                  • CNTO1275CRD3002-20270 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20270; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                Source metadata
                                Source name
                                rectum biopsy
                                Characteristics
                                tissue: rectum; donor id: CNTO1275CRD3002-20270; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM6268371
                                sample_title: CNTO1275CRD3002-20270 rectum biopsy week 0
                                source_name: rectum biopsy
                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20270; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                GSM6268372

                                Uncertain

                                CNTO1275CRD3002-20072 rectum biopsy week 0

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • CNTO1275CRD3002-20072 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20072; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                      • CNTO1275CRD3002-20072 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20072; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • CNTO1275CRD3002-20072 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20072; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                        • CNTO1275CRD3002-20072 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20072; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                      Source metadata
                                      Source name
                                      rectum biopsy
                                      Characteristics
                                      tissue: rectum; donor id: CNTO1275CRD3002-20072; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM6268372
                                      sample_title: CNTO1275CRD3002-20072 rectum biopsy week 0
                                      source_name: rectum biopsy
                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20072; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                      GSM6268373

                                      Uncertain

                                      CNTO1275CRD3002-20109 rectum biopsy week 0

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • CNTO1275CRD3002-20109 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20109; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                            • CNTO1275CRD3002-20109 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20109; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • CNTO1275CRD3002-20109 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20109; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                              • CNTO1275CRD3002-20109 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20109; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                            Source metadata
                                            Source name
                                            rectum biopsy
                                            Characteristics
                                            tissue: rectum; donor id: CNTO1275CRD3002-20109; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM6268373
                                            sample_title: CNTO1275CRD3002-20109 rectum biopsy week 0
                                            source_name: rectum biopsy
                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20109; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                            GSM6268374

                                            Uncertain

                                            CNTO1275CRD3002-20346 rectum biopsy week 0

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • CNTO1275CRD3002-20346 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20346; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                  • CNTO1275CRD3002-20346 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20346; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • CNTO1275CRD3002-20346 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20346; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                    • CNTO1275CRD3002-20346 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20346; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                  Source metadata
                                                  Source name
                                                  rectum biopsy
                                                  Characteristics
                                                  tissue: rectum; donor id: CNTO1275CRD3002-20346; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM6268374
                                                  sample_title: CNTO1275CRD3002-20346 rectum biopsy week 0
                                                  source_name: rectum biopsy
                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20346; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                  GSM6268375

                                                  Uncertain

                                                  HC-1 rectum biopsy week 0

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • HC-1 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-1; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                        • HC-1 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-1; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • HC-1 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-1; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                          • HC-1 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-1; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                        Source metadata
                                                        Source name
                                                        rectum biopsy
                                                        Characteristics
                                                        tissue: rectum; donor id: HC-1; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM6268375
                                                        sample_title: HC-1 rectum biopsy week 0
                                                        source_name: rectum biopsy
                                                        characteristics: tissue: rectum; donor id: HC-1; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                        GSM6268376

                                                        Uncertain

                                                        HC-2 rectum biopsy week 0

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • HC-2 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-2; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                              • HC-2 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-2; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • HC-2 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-2; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                • HC-2 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-2; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                              Source metadata
                                                              Source name
                                                              rectum biopsy
                                                              Characteristics
                                                              tissue: rectum; donor id: HC-2; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM6268376
                                                              sample_title: HC-2 rectum biopsy week 0
                                                              source_name: rectum biopsy
                                                              characteristics: tissue: rectum; donor id: HC-2; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                              GSM6268377

                                                              Uncertain

                                                              HC-3 rectum biopsy week 0

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • HC-3 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-3; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                    • HC-3 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-3; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • HC-3 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-3; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                      • HC-3 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-3; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                    Source metadata
                                                                    Source name
                                                                    rectum biopsy
                                                                    Characteristics
                                                                    tissue: rectum; donor id: HC-3; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM6268377
                                                                    sample_title: HC-3 rectum biopsy week 0
                                                                    source_name: rectum biopsy
                                                                    characteristics: tissue: rectum; donor id: HC-3; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                    GSM6268378

                                                                    Uncertain

                                                                    HC-4 rectum biopsy week 0

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • HC-4 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-4; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                          • HC-4 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-4; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • HC-4 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-4; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                            • HC-4 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-4; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                          Source metadata
                                                                          Source name
                                                                          rectum biopsy
                                                                          Characteristics
                                                                          tissue: rectum; donor id: HC-4; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM6268378
                                                                          sample_title: HC-4 rectum biopsy week 0
                                                                          source_name: rectum biopsy
                                                                          characteristics: tissue: rectum; donor id: HC-4; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                          GSM6268379

                                                                          Uncertain

                                                                          HC-5 rectum biopsy week 0

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • HC-5 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-5; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                • HC-5 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-5; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • HC-5 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-5; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                  • HC-5 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-5; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                Source metadata
                                                                                Source name
                                                                                rectum biopsy
                                                                                Characteristics
                                                                                tissue: rectum; donor id: HC-5; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM6268379
                                                                                sample_title: HC-5 rectum biopsy week 0
                                                                                source_name: rectum biopsy
                                                                                characteristics: tissue: rectum; donor id: HC-5; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                GSM6268380

                                                                                Uncertain

                                                                                HC-6 rectum biopsy week 0

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • HC-6 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-6; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                      • HC-6 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-6; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • HC-6 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-6; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                        • HC-6 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-6; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                      Source metadata
                                                                                      Source name
                                                                                      rectum biopsy
                                                                                      Characteristics
                                                                                      tissue: rectum; donor id: HC-6; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM6268380
                                                                                      sample_title: HC-6 rectum biopsy week 0
                                                                                      source_name: rectum biopsy
                                                                                      characteristics: tissue: rectum; donor id: HC-6; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                      GSM6268381

                                                                                      Uncertain

                                                                                      HC-7 rectum biopsy week 0

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • HC-7 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-7; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                            • HC-7 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-7; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • HC-7 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-7; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                              • HC-7 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-7; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                            Source metadata
                                                                                            Source name
                                                                                            rectum biopsy
                                                                                            Characteristics
                                                                                            tissue: rectum; donor id: HC-7; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM6268381
                                                                                            sample_title: HC-7 rectum biopsy week 0
                                                                                            source_name: rectum biopsy
                                                                                            characteristics: tissue: rectum; donor id: HC-7; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                            GSM6268382

                                                                                            Uncertain

                                                                                            HC-8 rectum biopsy week 0

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • HC-8 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-8; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                  • HC-8 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-8; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • HC-8 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-8; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                    • HC-8 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-8; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  rectum biopsy
                                                                                                  Characteristics
                                                                                                  tissue: rectum; donor id: HC-8; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM6268382
                                                                                                  sample_title: HC-8 rectum biopsy week 0
                                                                                                  source_name: rectum biopsy
                                                                                                  characteristics: tissue: rectum; donor id: HC-8; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                  GSM6268383

                                                                                                  Uncertain

                                                                                                  HC-9 rectum biopsy week 0

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • HC-9 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-9; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                        • HC-9 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-9; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • HC-9 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-9; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                          • HC-9 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-9; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at ...
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        rectum biopsy
                                                                                                        Characteristics
                                                                                                        tissue: rectum; donor id: HC-9; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM6268383
                                                                                                        sample_title: HC-9 rectum biopsy week 0
                                                                                                        source_name: rectum biopsy
                                                                                                        characteristics: tissue: rectum; donor id: HC-9; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                        GSM6268384

                                                                                                        Uncertain

                                                                                                        HC-10 rectum biopsy week 0

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • HC-10 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-10; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                              • HC-10 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-10; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • HC-10 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-10; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                • HC-10 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-10; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              rectum biopsy
                                                                                                              Characteristics
                                                                                                              tissue: rectum; donor id: HC-10; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM6268384
                                                                                                              sample_title: HC-10 rectum biopsy week 0
                                                                                                              source_name: rectum biopsy
                                                                                                              characteristics: tissue: rectum; donor id: HC-10; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                              GSM6268385

                                                                                                              Uncertain

                                                                                                              HC-11 rectum biopsy week 0

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • HC-11 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-11; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                    • HC-11 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-11; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • HC-11 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-11; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                      • HC-11 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-11; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    rectum biopsy
                                                                                                                    Characteristics
                                                                                                                    tissue: rectum; donor id: HC-11; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM6268385
                                                                                                                    sample_title: HC-11 rectum biopsy week 0
                                                                                                                    source_name: rectum biopsy
                                                                                                                    characteristics: tissue: rectum; donor id: HC-11; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                    GSM6268386

                                                                                                                    Uncertain

                                                                                                                    HC-12 rectum biopsy week 0

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • HC-12 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-12; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                          • HC-12 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-12; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • HC-12 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-12; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                            • HC-12 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-12; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          rectum biopsy
                                                                                                                          Characteristics
                                                                                                                          tissue: rectum; donor id: HC-12; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM6268386
                                                                                                                          sample_title: HC-12 rectum biopsy week 0
                                                                                                                          source_name: rectum biopsy
                                                                                                                          characteristics: tissue: rectum; donor id: HC-12; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                          GSM6268387

                                                                                                                          Uncertain

                                                                                                                          HC-13 rectum biopsy week 0

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • HC-13 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-13; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                • HC-13 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-13; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • HC-13 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-13; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                  • HC-13 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-13; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                rectum biopsy
                                                                                                                                Characteristics
                                                                                                                                tissue: rectum; donor id: HC-13; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM6268387
                                                                                                                                sample_title: HC-13 rectum biopsy week 0
                                                                                                                                source_name: rectum biopsy
                                                                                                                                characteristics: tissue: rectum; donor id: HC-13; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                GSM6268388

                                                                                                                                Uncertain

                                                                                                                                HC-14 rectum biopsy week 0

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • HC-14 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-14; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                      • HC-14 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-14; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • HC-14 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-14; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                        • HC-14 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-14; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      rectum biopsy
                                                                                                                                      Characteristics
                                                                                                                                      tissue: rectum; donor id: HC-14; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM6268388
                                                                                                                                      sample_title: HC-14 rectum biopsy week 0
                                                                                                                                      source_name: rectum biopsy
                                                                                                                                      characteristics: tissue: rectum; donor id: HC-14; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                      GSM6268389

                                                                                                                                      Uncertain

                                                                                                                                      HC-15 rectum biopsy week 0

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • HC-15 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-15; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                            • HC-15 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-15; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • HC-15 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-15; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                              • HC-15 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-15; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            rectum biopsy
                                                                                                                                            Characteristics
                                                                                                                                            tissue: rectum; donor id: HC-15; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM6268389
                                                                                                                                            sample_title: HC-15 rectum biopsy week 0
                                                                                                                                            source_name: rectum biopsy
                                                                                                                                            characteristics: tissue: rectum; donor id: HC-15; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                            GSM6268390

                                                                                                                                            Uncertain

                                                                                                                                            HC-16 rectum biopsy week 0

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • HC-16 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-16; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                  • HC-16 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-16; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • HC-16 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-16; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                    • HC-16 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-16; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  rectum biopsy
                                                                                                                                                  Characteristics
                                                                                                                                                  tissue: rectum; donor id: HC-16; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM6268390
                                                                                                                                                  sample_title: HC-16 rectum biopsy week 0
                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                  characteristics: tissue: rectum; donor id: HC-16; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                  GSM6268391

                                                                                                                                                  Uncertain

                                                                                                                                                  HC-17 rectum biopsy week 0

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • HC-17 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-17; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                        • HC-17 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-17; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • HC-17 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-17; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                          • HC-17 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-17; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        rectum biopsy
                                                                                                                                                        Characteristics
                                                                                                                                                        tissue: rectum; donor id: HC-17; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM6268391
                                                                                                                                                        sample_title: HC-17 rectum biopsy week 0
                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                        characteristics: tissue: rectum; donor id: HC-17; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                        GSM6268392

                                                                                                                                                        Uncertain

                                                                                                                                                        HC-18 rectum biopsy week 0

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • HC-18 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-18; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                              • HC-18 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-18; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • HC-18 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-18; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                • HC-18 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-18; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              rectum biopsy
                                                                                                                                                              Characteristics
                                                                                                                                                              tissue: rectum; donor id: HC-18; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM6268392
                                                                                                                                                              sample_title: HC-18 rectum biopsy week 0
                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                              characteristics: tissue: rectum; donor id: HC-18; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                              GSM6268393

                                                                                                                                                              Uncertain

                                                                                                                                                              HC-19 rectum biopsy week 0

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • HC-19 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-19; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                    • HC-19 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-19; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • HC-19 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-19; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                      • HC-19 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-19; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    rectum biopsy
                                                                                                                                                                    Characteristics
                                                                                                                                                                    tissue: rectum; donor id: HC-19; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM6268393
                                                                                                                                                                    sample_title: HC-19 rectum biopsy week 0
                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                    characteristics: tissue: rectum; donor id: HC-19; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                                    GSM6268394

                                                                                                                                                                    Uncertain

                                                                                                                                                                    HC-20 rectum biopsy week 0

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • HC-20 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-20; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                          • HC-20 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-20; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • HC-20 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-20; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                            • HC-20 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-20; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          rectum biopsy
                                                                                                                                                                          Characteristics
                                                                                                                                                                          tissue: rectum; donor id: HC-20; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM6268394
                                                                                                                                                                          sample_title: HC-20 rectum biopsy week 0
                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                          characteristics: tissue: rectum; donor id: HC-20; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                                          GSM6268395

                                                                                                                                                                          Uncertain

                                                                                                                                                                          HC-21 rectum biopsy week 0

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • HC-21 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-21; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                • HC-21 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-21; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • HC-21 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-21; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                  • HC-21 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-21; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                Characteristics
                                                                                                                                                                                tissue: rectum; donor id: HC-21; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM6268395
                                                                                                                                                                                sample_title: HC-21 rectum biopsy week 0
                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                characteristics: tissue: rectum; donor id: HC-21; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                                                GSM6268396

                                                                                                                                                                                Uncertain

                                                                                                                                                                                HC-22 rectum biopsy week 0

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • HC-22 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-22; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                      • HC-22 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-22; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • HC-22 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-22; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                        • HC-22 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-22; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      tissue: rectum; donor id: HC-22; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM6268396
                                                                                                                                                                                      sample_title: HC-22 rectum biopsy week 0
                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                      characteristics: tissue: rectum; donor id: HC-22; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                                                      GSM6268397

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      HC-23 rectum biopsy week 0

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • HC-23 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-23; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                            • HC-23 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-23; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • HC-23 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-23; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                              • HC-23 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: HC-23; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing a...
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            tissue: rectum; donor id: HC-23; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM6268397
                                                                                                                                                                                            sample_title: HC-23 rectum biopsy week 0
                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                            characteristics: tissue: rectum; donor id: HC-23; visit: I-WK0; diagnosis: healthy control; treatment: NA; inflamed area at week 0: NA; mucosal healing at week 8: NA

                                                                                                                                                                                            GSM6268398

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            CNTO1275CRD3002-20660 rectum biopsy week 0

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • CNTO1275CRD3002-20660 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20660; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                  • CNTO1275CRD3002-20660 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20660; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • CNTO1275CRD3002-20660 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20660; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                    • CNTO1275CRD3002-20660 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20660; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20660; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM6268398
                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20660 rectum biopsy week 0
                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20660; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                  GSM6268399

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  CNTO1275CRD3002-20458 rectum biopsy week 0

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • CNTO1275CRD3002-20458 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20458; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                        • CNTO1275CRD3002-20458 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20458; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • CNTO1275CRD3002-20458 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20458; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                          • CNTO1275CRD3002-20458 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20458; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20458; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM6268399
                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20458 rectum biopsy week 0
                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20458; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                        GSM6268400

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        CNTO1275CRD3002-20393 rectum biopsy week 0

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • CNTO1275CRD3002-20393 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20393; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                              • CNTO1275CRD3002-20393 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20393; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • CNTO1275CRD3002-20393 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20393; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                • CNTO1275CRD3002-20393 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20393; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20393; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM6268400
                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20393 rectum biopsy week 0
                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20393; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                              GSM6268401

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              CNTO1275CRD3002-20908 rectum biopsy week 0

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • CNTO1275CRD3002-20908 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20908; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                    • CNTO1275CRD3002-20908 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20908; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • CNTO1275CRD3002-20908 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20908; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                      • CNTO1275CRD3002-20908 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20908; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20908; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM6268401
                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20908 rectum biopsy week 0
                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20908; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                    GSM6268402

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    CNTO1275CRD3002-20679 rectum biopsy week 0

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • CNTO1275CRD3002-20679 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20679; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                          • CNTO1275CRD3002-20679 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20679; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • CNTO1275CRD3002-20679 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20679; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                            • CNTO1275CRD3002-20679 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20679; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20679; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM6268402
                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20679 rectum biopsy week 0
                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20679; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                          GSM6268403

                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                          CNTO1275CRD3002-20291 rectum biopsy week 0

                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • CNTO1275CRD3002-20291 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20291; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                • CNTO1275CRD3002-20291 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20291; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • CNTO1275CRD3002-20291 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20291; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                  • CNTO1275CRD3002-20291 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20291; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20291; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM6268403
                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20291 rectum biopsy week 0
                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20291; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                GSM6268404

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                CNTO1275CRD3002-20209 rectum biopsy week 0

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • CNTO1275CRD3002-20209 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20209; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                      • CNTO1275CRD3002-20209 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20209; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • CNTO1275CRD3002-20209 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20209; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                        • CNTO1275CRD3002-20209 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20209; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20209; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM6268404
                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20209 rectum biopsy week 0
                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20209; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                      GSM6268405

                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                      CNTO1275CRD3002-20196 rectum biopsy week 0

                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • CNTO1275CRD3002-20196 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20196; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                            • CNTO1275CRD3002-20196 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20196; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • CNTO1275CRD3002-20196 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20196; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                              • CNTO1275CRD3002-20196 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20196; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20196; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM6268405
                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20196 rectum biopsy week 0
                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20196; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                            GSM6268406

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            CNTO1275CRD3002-20441 rectum biopsy week 0

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20441 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20441; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20441 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20441; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20441 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20441; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20441 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20441; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20441; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM6268406
                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20441 rectum biopsy week 0
                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20441; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                  GSM6268407

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  CNTO1275CRD3002-20685 rectum biopsy week 0

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20685 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20685; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20685 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20685; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20685 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20685; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20685 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20685; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20685; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM6268407
                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20685 rectum biopsy week 0
                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20685; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                        GSM6268408

                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                        CNTO1275CRD3002-20851 rectum biopsy week 0

                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20851 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20851; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20851 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20851; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20851 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20851; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20851 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20851; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20851; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM6268408
                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20851 rectum biopsy week 0
                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20851; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                              GSM6268409

                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                              CNTO1275CRD3002-20930 rectum biopsy week 0

                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20930 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20930; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20930 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20930; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20930 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20930; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20930 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20930; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20930; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM6268409
                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20930 rectum biopsy week 0
                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20930; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                    GSM6268410

                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20616 rectum biopsy week 0

                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20616 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20616; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20616 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20616; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20616 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20616; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20616 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20616; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20616; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM6268410
                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20616 rectum biopsy week 0
                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20616; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                          GSM6268411

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20149 rectum biopsy week 0

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20149 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20149; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20149 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20149; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20149 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20149; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20149 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20149; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20149; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM6268411
                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20149 rectum biopsy week 0
                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20149; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                GSM6268412

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20171 rectum biopsy week 0

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20171 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20171; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20171 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20171; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20171 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20171; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20171 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20171; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20171; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM6268412
                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20171 rectum biopsy week 0
                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20171; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                      GSM6268413

                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20106 rectum biopsy week 0

                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20106 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20106; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20106 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20106; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20106 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20106; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20106 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20106; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20106; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM6268413
                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20106 rectum biopsy week 0
                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20106; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                            GSM6268414

                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20682 rectum biopsy week 0

                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20682 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20682; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20682 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20682; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20682 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20682; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20682 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20682; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20682; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268414
                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20682 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20682; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                  GSM6268415

                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20843 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20843 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20843; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20843 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20843; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20843 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20843; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20843 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20843; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20843; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268415
                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20843 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20843; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                        GSM6268416

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20963 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20963 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20963; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20963 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20963; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20963 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20963; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20963 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20963; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20963; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268416
                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20963 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20963; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                              GSM6268417

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20548 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20548 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20548; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20548 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20548; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20548 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20548; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20548 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20548; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20548; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268417
                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20548 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20548; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                    GSM6268418

                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20673 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20673 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20673; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20673 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20673; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20673 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20673; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20673 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20673; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20673; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268418
                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20673 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20673; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                          GSM6268419

                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20978 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20978 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20978; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20978 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20978; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20978 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20978; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20978 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20978; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20978; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268419
                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20978 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20978; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                GSM6268420

                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20542 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20542 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20542; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20542 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20542; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20542 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20542; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20542 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20542; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20542; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268420
                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20542 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20542; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                      GSM6268421

                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20133 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20133 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20133; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20133 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20133; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20133 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20133; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20133 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20133; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20133; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268421
                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20133 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20133; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                            GSM6268422

                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20286 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20286 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20286; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20286 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20286; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20286 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20286; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20286 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20286; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20286; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268422
                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20286 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20286; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                  GSM6268423

                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20863 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20863 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20863; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20863 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20863; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20863 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20863; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20863 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20863; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20863; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268423
                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20863 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20863; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                        GSM6268424

                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20484 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20484 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20484; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20484 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20484; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20484 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20484; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20484 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20484; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20484; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268424
                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20484 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20484; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                              GSM6268425

                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20058 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20058 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20058; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20058 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20058; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20058 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20058; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20058 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20058; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20058; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268425
                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20058 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20058; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                    GSM6268426

                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20004 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20004 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20004; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20004 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20004; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20004 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20004; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20004 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20004; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20004; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268426
                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20004 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20004; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                          GSM6268427

                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20155 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20155 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20155; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20155 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20155; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20155 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20155; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20155 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20155; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20155; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268427
                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20155 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20155; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                GSM6268428

                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20814 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20814 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20814; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20814 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20814; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20814 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20814; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20814 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20814; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20814; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268428
                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20814 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20814; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                      GSM6268429

                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20429 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20429 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20429; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20429 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20429; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20429 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20429; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20429 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20429; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20429; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268429
                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20429 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20429; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                            GSM6268430

                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20986 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20986 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20986; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20986 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20986; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20986 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20986; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20986 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20986; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20986; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268430
                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20986 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20986; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268431

                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20116 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20116 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20116; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20116 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20116; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20116 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20116; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20116 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20116; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20116; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268431
                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20116 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20116; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268432

                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20047 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20047 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20047; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20047 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20047; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20047 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20047; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20047 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20047; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20047; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268432
                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20047 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20047; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268433

                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20021 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20021 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20021; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20021 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20021; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20021 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20021; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20021 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20021; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20021; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268433
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20021 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20021; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268434

                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20894 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20894 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20894; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20894 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20894; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20894 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20894; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20894 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20894; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20894; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268434
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20894 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20894; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268435

                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20009 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20009 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20009; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20009 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20009; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20009 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20009; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20009 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20009; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20009; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268435
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20009 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20009; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268436

                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20541 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20541 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20541; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20541 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20541; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20541 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20541; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20541 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20541; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20541; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268436
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20541 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20541; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268437

                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20757 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20757 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20757; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20757 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20757; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20757 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20757; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20757 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20757; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20757; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268437
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20757 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20757; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268438

                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20187 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20187 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20187; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20187 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20187; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20187 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20187; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20187 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20187; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20187; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268438
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20187 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20187; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268439

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20176 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20176 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20176; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20176 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20176; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20176 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20176; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20176 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20176; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20176; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268439
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20176 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20176; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268440

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20878 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20878 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20878; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20878 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20878; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20878 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20878; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20878 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20878; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20878; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268440
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20878 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20878; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268441

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20805 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20805 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20805; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20805 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20805; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20805 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20805; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20805 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20805; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20805; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268441
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20805 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20805; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268442

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20529 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20529 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20529; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20529 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20529; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20529 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20529; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20529 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20529; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20529; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20529 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20529; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268443

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20621 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20621 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20621; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20621 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20621; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20621 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20621; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20621 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20621; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20621; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20621 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20621; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268444

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20345 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20345 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20345; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20345 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20345; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20345 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20345; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20345 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20345; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20345; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20345 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20345; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268445

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20504 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20504 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20504; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20504 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20504; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20504 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20504; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20504 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20504; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20504; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20504 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20504; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268446

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20279 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20279 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20279; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20279 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20279; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20279 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20279; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20279 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20279; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20279; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20279 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20279; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268447

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20182 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20182 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20182; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20182 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20182; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20182 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20182; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20182 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20182; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20182; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268447
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20182 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20182; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268448

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20798 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20798 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20798; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20798 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20798; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20798 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20798; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20798 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20798; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20798; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268448
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20798 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20798; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268449

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20623 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20623 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20623; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20623 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20623; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20623 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20623; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20623 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20623; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20623; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20623 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20623; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268450

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20104 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20104 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20104; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20104 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20104; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20104 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20104; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20104 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20104; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20104; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20104 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20104; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268451

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20244 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20244 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20244; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20244 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20244; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20244 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20244; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20244 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20244; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20244; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20244 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20244; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268452

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20219 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20219 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20219; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20219 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20219; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20219 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20219; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20219 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20219; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20219; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268452
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20219 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20219; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268453

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20082 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20082 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20082; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20082 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20082; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20082 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20082; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20082 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20082; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20082; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20082 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20082; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268454

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20215 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20215 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20215; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20215 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20215; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20215 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20215; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20215 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20215; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20215; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20215 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20215; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268455

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20304 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20304 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20304; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20304 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20304; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20304 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20304; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20304 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20304; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20304; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20304 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20304; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268456

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20329 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20329 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20329; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20329 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20329; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20329 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20329; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20329 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20329; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20329; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20329 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20329; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268457

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20231 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20231 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20231; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20231 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20231; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20231 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20231; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20231 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20231; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20231; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268457
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20231 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20231; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268458

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20678 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20678 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20678; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20678 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20678; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20678 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20678; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20678 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20678; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20678; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20678 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20678; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268459

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20217 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20217 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20217; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20217 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20217; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20217 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20217; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20217 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20217; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20217; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268459
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20217 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20217; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268460

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20656 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20656 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20656; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20656 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20656; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20656 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20656; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20656 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20656; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20656; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20656 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20656; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268461

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20865 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20865 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20865; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20865 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20865; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20865 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20865; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20865 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20865; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20865; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20865 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20865; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268462

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20848 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20848 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20848; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20848 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20848; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20848 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20848; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20848 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20848; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20848; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268462
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20848 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20848; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268463

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20087 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20087 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20087; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20087 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20087; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20087 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20087; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20087 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20087; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20087; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20087 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20087; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268464

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20732 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20732 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20732; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20732 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20732; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20732 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20732; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20732 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20732; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20732; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20732 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20732; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268465

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-21011 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-21011 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21011; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-21011 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21011; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-21011 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21011; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-21011 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21011; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-21011; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-21011 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21011; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268466

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20781 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20781 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20781; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20781 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20781; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20781 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20781; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20781 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20781; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20781; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20781 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20781; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268467

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20438 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20438 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20438; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20438 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20438; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20438 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20438; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20438 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20438; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20438; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20438 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20438; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268468

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20245 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20245 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20245; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20245 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20245; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20245 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20245; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20245 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20245; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20245; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268468
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20245 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20245; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268469

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20198 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20198 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20198; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20198 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20198; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20198 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20198; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20198 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20198; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20198; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20198 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20198; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268470

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20459 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20459 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20459; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20459 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20459; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20459 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20459; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20459 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20459; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20459; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20459 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20459; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268471

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-21043 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-21043 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21043; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-21043 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21043; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-21043 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21043; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-21043 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21043; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-21043; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-21043 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21043; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268472

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20604 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20604 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20604; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20604 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20604; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20604 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20604; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20604 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20604; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20604; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20604 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20604; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268473

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20969 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20969 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20969; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20969 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20969; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20969 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20969; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20969 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20969; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20969; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268473
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20969 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20969; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268474

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20962 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20962 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20962; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20962 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20962; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20962 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20962; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20962 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20962; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20962; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20962 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20962; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268475

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20637 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20637 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20637; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20637 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20637; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20637 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20637; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20637 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20637; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20637; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268475
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20637 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20637; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268476

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20559 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20559 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20559; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20559 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20559; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20559 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20559; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20559 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20559; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20559; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20559 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20559; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268477

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20051 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20051 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20051; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20051 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20051; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20051 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20051; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20051 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20051; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20051; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268477
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20051 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20051; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268478

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20531 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20531 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20531; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20531 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20531; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20531 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20531; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20531 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20531; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20531; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268478
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20531 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20531; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268479

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20432 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20432 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20432; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20432 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20432; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20432 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20432; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20432 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20432; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20432; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20432 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20432; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268480

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20481 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20481 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20481; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20481 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20481; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20481 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20481; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20481 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20481; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20481; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20481 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20481; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268481

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20290 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20290 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20290; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20290 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20290; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20290 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20290; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20290 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20290; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20290; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20290 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20290; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268482

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-21032 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-21032 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21032; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-21032 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21032; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-21032 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21032; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-21032 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21032; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-21032; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268482
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-21032 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21032; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268483

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20971 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20971 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20971; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20971 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20971; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20971 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20971; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20971 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20971; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20971; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20971 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20971; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268484

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20791 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20791 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20791; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20791 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20791; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20791 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20791; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20791 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20791; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20791; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268484
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20791 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20791; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268485

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20148 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20148 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20148; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20148 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20148; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20148 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20148; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20148 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20148; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20148; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268485
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20148 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20148; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268486

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20547 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20547 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20547; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20547 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20547; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20547 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20547; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20547 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20547; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20547; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268486
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20547 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20547; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268487

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20980 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20980 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20980; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20980 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20980; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20980 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20980; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20980 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20980; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20980; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268487
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20980 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20980; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268488

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20472 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20472 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20472; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20472 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20472; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20472 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20472; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20472 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20472; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20472; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20472 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20472; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268489

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20922 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20922 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20922; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20922 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20922; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20922 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20922; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20922 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20922; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20922; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20922 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20922; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268490

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20653 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20653 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20653; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20653 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20653; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20653 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20653; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20653 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20653; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20653; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20653 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20653; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268491

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20367 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20367 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20367; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20367 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20367; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20367 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20367; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20367 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20367; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20367; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268491
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20367 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20367; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268492

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20783 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20783 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20783; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20783 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20783; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20783 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20783; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20783 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20783; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20783; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268492
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20783 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20783; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268493

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20886 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20886 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20886; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20886 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20886; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20886 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20886; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20886 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20886; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20886; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20886 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20886; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268494

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-21035 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-21035 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21035; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-21035 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21035; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-21035 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21035; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-21035 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21035; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-21035; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268494
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-21035 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21035; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268495

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20514 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20514 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20514; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20514 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20514; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20514 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20514; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20514 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20514; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20514; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268495
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20514 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20514; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268496

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20295 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20295 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20295; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20295 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20295; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20295 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20295; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20295 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20295; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20295; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20295 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20295; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268497

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20838 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20838 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20838; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20838 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20838; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20838 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20838; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20838 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20838; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20838; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20838 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20838; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: Y

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268498

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20292 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20292 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20292; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20292 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20292; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20292 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20292; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20292 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20292; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20292; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20292 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20292; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268499

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-20959 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20959 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20959; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20959 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20959; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20959 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20959; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20959 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20959; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-20959; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-20959 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20959; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268500

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20928 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20928 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20928; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20928 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20928; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20928 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20928; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20928 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20928; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20928; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268500
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20928 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20928; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268501

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20829 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20829 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20829; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20829 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20829; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20829 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20829; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20829 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20829; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20829; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268501
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20829 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20829; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268502

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20929 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20929 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20929; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20929 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20929; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20929 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20929; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20929 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20929; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20929; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20929 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20929; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (520 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268503

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20937 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20937 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20937; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20937 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20937; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20937 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20937; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20937 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20937; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20937; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20937 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20937; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268504

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20681 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20681 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20681; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20681 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20681; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20681 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20681; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20681 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20681; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20681; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268504
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20681 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20681; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268505

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-21019 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-21019 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21019; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-21019 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21019; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-21019 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21019; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-21019 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21019; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-21019; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-21019 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21019; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268506

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-21010 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-21010 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21010; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-21010 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21010; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-21010 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21010; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-21010 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21010; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-21010; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-21010 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21010; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6268507

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO1275CRD3002-21016 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-21016 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21016; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-21016 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21016; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-21016 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21016; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-21016 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-21016; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: rectum; donor id: CNTO1275CRD3002-21016; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6268507
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO1275CRD3002-21016 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: rectum; donor id: CNTO1275CRD3002-21016; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6268508

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO1275CRD3002-20151 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20151 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20151; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20151 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20151; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20151 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20151; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20151 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20151; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: rectum; donor id: CNTO1275CRD3002-20151; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6268508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO1275CRD3002-20151 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20151; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6268509

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO1275CRD3002-20194 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20194 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20194; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20194 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20194; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20194 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20194; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20194 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20194; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: rectum; donor id: CNTO1275CRD3002-20194; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6268509
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO1275CRD3002-20194 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20194; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6268510

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO1275CRD3002-20170 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20170 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20170; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO1275CRD3002-20170 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20170; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20170 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20170; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20170 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20170; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: rectum; donor id: CNTO1275CRD3002-20170; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6268510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO1275CRD3002-20170 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20170; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: NA

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6268511

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO1275CRD3002-20404 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20404 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20404; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO1275CRD3002-20404 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20404; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20404 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20404; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20404 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20404; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: rectum; donor id: CNTO1275CRD3002-20404; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6268511
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO1275CRD3002-20404 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20404; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (390 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6268512

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO1275CRD3002-20237 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20237 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20237; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO1275CRD3002-20237 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20237; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20237 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20237; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO1275CRD3002-20237 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20237; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/k...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: rectum; donor id: CNTO1275CRD3002-20237; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6268512
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO1275CRD3002-20237 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20237; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 6 mg/kg (260 mg); inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6268513

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO1275CRD3002-20358 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20358 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20358; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO1275CRD3002-20358 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20358; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20358 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20358; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO1275CRD3002-20358 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20358; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflam...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: rectum; donor id: CNTO1275CRD3002-20358; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6268513
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO1275CRD3002-20358 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20358; visit: I-WK0; diagnosis: Crohn's disease; treatment: Placebo IV; inflamed area at week 0: Ileum and colon; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6268514

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO1275CRD3002-20675 rectum biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20675 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20675; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO1275CRD3002-20675 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20675; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20675 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20675; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO1275CRD3002-20675 rectum biopsy week 0 rectum biopsy tissue: rectum; donor id: CNTO1275CRD3002-20675; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: rectum; donor id: CNTO1275CRD3002-20675; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6268514
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO1275CRD3002-20675 rectum biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: rectum biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: rectum; donor id: CNTO1275CRD3002-20675; visit: I-WK0; diagnosis: Crohn's disease; treatment: Ustekinumab 130 mg IV; inflamed area at week 0: Colon only; mucosal healing at week 8: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          No excluded samples.