Matching samples

GSE212849 · Prediction of Golimumab Response in the PROgECT Phase 2a Open-Label Trial of Patients With Ulcerative Colitis

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

84 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (84)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM6557038

Uncertain

CNTO148UCO2001-100002 colon biopsy week 0

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • CNTO148UCO2001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100002; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
        • CNTO148UCO2001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100002; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • CNTO148UCO2001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100002; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
          • CNTO148UCO2001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100002; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
        Source metadata
        Source name
        colon biopsy
        Characteristics
        tissue: colon; donor id: CNTO148UCO2001-100002; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM6557038
        sample_title: CNTO148UCO2001-100002 colon biopsy week 0
        source_name: colon biopsy
        characteristics: tissue: colon; donor id: CNTO148UCO2001-100002; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

        GSM6557039

        Uncertain

        CNTO148UCO2001-100003 colon biopsy week 0

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • CNTO148UCO2001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100003; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
              • CNTO148UCO2001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100003; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • CNTO148UCO2001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100003; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                • CNTO148UCO2001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100003; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
              Source metadata
              Source name
              colon biopsy
              Characteristics
              tissue: colon; donor id: CNTO148UCO2001-100003; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM6557039
              sample_title: CNTO148UCO2001-100003 colon biopsy week 0
              source_name: colon biopsy
              characteristics: tissue: colon; donor id: CNTO148UCO2001-100003; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

              GSM6557041

              Uncertain

              CNTO148UCO2001-100007 colon biopsy week 0

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • CNTO148UCO2001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100007; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                    • CNTO148UCO2001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100007; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • CNTO148UCO2001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100007; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                      • CNTO148UCO2001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100007; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                    Source metadata
                    Source name
                    colon biopsy
                    Characteristics
                    tissue: colon; donor id: CNTO148UCO2001-100007; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM6557041
                    sample_title: CNTO148UCO2001-100007 colon biopsy week 0
                    source_name: colon biopsy
                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100007; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                    GSM6557042

                    Uncertain

                    CNTO148UCO2001-100009 colon biopsy week 0

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • CNTO148UCO2001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100009; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                          • CNTO148UCO2001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100009; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • CNTO148UCO2001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100009; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                            • CNTO148UCO2001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100009; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                          Source metadata
                          Source name
                          colon biopsy
                          Characteristics
                          tissue: colon; donor id: CNTO148UCO2001-100009; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM6557042
                          sample_title: CNTO148UCO2001-100009 colon biopsy week 0
                          source_name: colon biopsy
                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100009; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                          GSM6557044

                          Uncertain

                          CNTO148UCO2001-100010 colon biopsy week 0

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • CNTO148UCO2001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100010; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                • CNTO148UCO2001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100010; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • CNTO148UCO2001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100010; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                  • CNTO148UCO2001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100010; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                Source metadata
                                Source name
                                colon biopsy
                                Characteristics
                                tissue: colon; donor id: CNTO148UCO2001-100010; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM6557044
                                sample_title: CNTO148UCO2001-100010 colon biopsy week 0
                                source_name: colon biopsy
                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100010; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                GSM6557045

                                Uncertain

                                CNTO148UCO2001-100012 colon biopsy week 0

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • CNTO148UCO2001-100012 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100012; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                      • CNTO148UCO2001-100012 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100012; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • CNTO148UCO2001-100012 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100012; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                        • CNTO148UCO2001-100012 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100012; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                      Source metadata
                                      Source name
                                      colon biopsy
                                      Characteristics
                                      tissue: colon; donor id: CNTO148UCO2001-100012; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM6557045
                                      sample_title: CNTO148UCO2001-100012 colon biopsy week 0
                                      source_name: colon biopsy
                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100012; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                      GSM6557047

                                      Uncertain

                                      CNTO148UCO2001-100017 colon biopsy week 0

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • CNTO148UCO2001-100017 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100017; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                            • CNTO148UCO2001-100017 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100017; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • CNTO148UCO2001-100017 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100017; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                              • CNTO148UCO2001-100017 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100017; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                            Source metadata
                                            Source name
                                            colon biopsy
                                            Characteristics
                                            tissue: colon; donor id: CNTO148UCO2001-100017; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM6557047
                                            sample_title: CNTO148UCO2001-100017 colon biopsy week 0
                                            source_name: colon biopsy
                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100017; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                            GSM6557048

                                            Uncertain

                                            CNTO148UCO2001-100019 colon biopsy week 0

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • CNTO148UCO2001-100019 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100019; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                  • CNTO148UCO2001-100019 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100019; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • CNTO148UCO2001-100019 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100019; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                    • CNTO148UCO2001-100019 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100019; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                  Source metadata
                                                  Source name
                                                  colon biopsy
                                                  Characteristics
                                                  tissue: colon; donor id: CNTO148UCO2001-100019; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM6557048
                                                  sample_title: CNTO148UCO2001-100019 colon biopsy week 0
                                                  source_name: colon biopsy
                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100019; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                  GSM6557049

                                                  Uncertain

                                                  CNTO148UCO2001-100020 colon biopsy week 0

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • CNTO148UCO2001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100020; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                        • CNTO148UCO2001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100020; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • CNTO148UCO2001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100020; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                          • CNTO148UCO2001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100020; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                        Source metadata
                                                        Source name
                                                        colon biopsy
                                                        Characteristics
                                                        tissue: colon; donor id: CNTO148UCO2001-100020; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM6557049
                                                        sample_title: CNTO148UCO2001-100020 colon biopsy week 0
                                                        source_name: colon biopsy
                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100020; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                        GSM6557051

                                                        Uncertain

                                                        CNTO148UCO2001-100021 colon biopsy week 0

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • CNTO148UCO2001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100021; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                              • CNTO148UCO2001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100021; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • CNTO148UCO2001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100021; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                • CNTO148UCO2001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100021; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                              Source metadata
                                                              Source name
                                                              colon biopsy
                                                              Characteristics
                                                              tissue: colon; donor id: CNTO148UCO2001-100021; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM6557051
                                                              sample_title: CNTO148UCO2001-100021 colon biopsy week 0
                                                              source_name: colon biopsy
                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100021; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                              GSM6557052

                                                              Uncertain

                                                              CNTO148UCO2001-100027 colon biopsy week 0

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • CNTO148UCO2001-100027 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100027; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                    • CNTO148UCO2001-100027 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100027; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • CNTO148UCO2001-100027 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100027; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                      • CNTO148UCO2001-100027 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100027; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                    Source metadata
                                                                    Source name
                                                                    colon biopsy
                                                                    Characteristics
                                                                    tissue: colon; donor id: CNTO148UCO2001-100027; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM6557052
                                                                    sample_title: CNTO148UCO2001-100027 colon biopsy week 0
                                                                    source_name: colon biopsy
                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100027; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                    GSM6557054

                                                                    Uncertain

                                                                    CNTO148UCO2001-100028 colon biopsy week 0

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • CNTO148UCO2001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100028; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                          • CNTO148UCO2001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100028; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • CNTO148UCO2001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100028; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                            • CNTO148UCO2001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100028; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                          Source metadata
                                                                          Source name
                                                                          colon biopsy
                                                                          Characteristics
                                                                          tissue: colon; donor id: CNTO148UCO2001-100028; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM6557054
                                                                          sample_title: CNTO148UCO2001-100028 colon biopsy week 0
                                                                          source_name: colon biopsy
                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100028; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                          GSM6557055

                                                                          Uncertain

                                                                          CNTO148UCO2001-100029 colon biopsy week 0

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • CNTO148UCO2001-100029 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100029; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                • CNTO148UCO2001-100029 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100029; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • CNTO148UCO2001-100029 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100029; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                  • CNTO148UCO2001-100029 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100029; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                Source metadata
                                                                                Source name
                                                                                colon biopsy
                                                                                Characteristics
                                                                                tissue: colon; donor id: CNTO148UCO2001-100029; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM6557055
                                                                                sample_title: CNTO148UCO2001-100029 colon biopsy week 0
                                                                                source_name: colon biopsy
                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100029; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                GSM6557057

                                                                                Uncertain

                                                                                CNTO148UCO2001-100030 colon biopsy week 0

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • CNTO148UCO2001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100030; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                      • CNTO148UCO2001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100030; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • CNTO148UCO2001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100030; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                        • CNTO148UCO2001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100030; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                      Source metadata
                                                                                      Source name
                                                                                      colon biopsy
                                                                                      Characteristics
                                                                                      tissue: colon; donor id: CNTO148UCO2001-100030; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM6557057
                                                                                      sample_title: CNTO148UCO2001-100030 colon biopsy week 0
                                                                                      source_name: colon biopsy
                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100030; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                      GSM6557058

                                                                                      Uncertain

                                                                                      CNTO148UCO2001-100032 colon biopsy week 0

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • CNTO148UCO2001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100032; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                            • CNTO148UCO2001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100032; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • CNTO148UCO2001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100032; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                              • CNTO148UCO2001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100032; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                            Source metadata
                                                                                            Source name
                                                                                            colon biopsy
                                                                                            Characteristics
                                                                                            tissue: colon; donor id: CNTO148UCO2001-100032; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM6557058
                                                                                            sample_title: CNTO148UCO2001-100032 colon biopsy week 0
                                                                                            source_name: colon biopsy
                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100032; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                            GSM6557059

                                                                                            Uncertain

                                                                                            CNTO148UCO2001-100033 colon biopsy week 0

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • CNTO148UCO2001-100033 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100033; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                  • CNTO148UCO2001-100033 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100033; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • CNTO148UCO2001-100033 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100033; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                    • CNTO148UCO2001-100033 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100033; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  colon biopsy
                                                                                                  Characteristics
                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100033; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM6557059
                                                                                                  sample_title: CNTO148UCO2001-100033 colon biopsy week 0
                                                                                                  source_name: colon biopsy
                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100033; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                  GSM6557061

                                                                                                  Uncertain

                                                                                                  CNTO148UCO2001-100035 colon biopsy week 0

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • CNTO148UCO2001-100035 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100035; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                        • CNTO148UCO2001-100035 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100035; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • CNTO148UCO2001-100035 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100035; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                          • CNTO148UCO2001-100035 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100035; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        colon biopsy
                                                                                                        Characteristics
                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100035; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM6557061
                                                                                                        sample_title: CNTO148UCO2001-100035 colon biopsy week 0
                                                                                                        source_name: colon biopsy
                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100035; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                        GSM6557062

                                                                                                        Uncertain

                                                                                                        CNTO148UCO2001-100036 colon biopsy week 0

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • CNTO148UCO2001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100036; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                              • CNTO148UCO2001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100036; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • CNTO148UCO2001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100036; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                • CNTO148UCO2001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100036; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              colon biopsy
                                                                                                              Characteristics
                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100036; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM6557062
                                                                                                              sample_title: CNTO148UCO2001-100036 colon biopsy week 0
                                                                                                              source_name: colon biopsy
                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100036; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                              GSM6557063

                                                                                                              Uncertain

                                                                                                              CNTO148UCO2001-100038 colon biopsy week 0

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • CNTO148UCO2001-100038 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100038; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                    • CNTO148UCO2001-100038 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100038; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • CNTO148UCO2001-100038 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100038; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                      • CNTO148UCO2001-100038 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100038; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    colon biopsy
                                                                                                                    Characteristics
                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100038; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM6557063
                                                                                                                    sample_title: CNTO148UCO2001-100038 colon biopsy week 0
                                                                                                                    source_name: colon biopsy
                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100038; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                    GSM6557065

                                                                                                                    Uncertain

                                                                                                                    CNTO148UCO2001-100042 colon biopsy week 0

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • CNTO148UCO2001-100042 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100042; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                          • CNTO148UCO2001-100042 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100042; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • CNTO148UCO2001-100042 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100042; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                            • CNTO148UCO2001-100042 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100042; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          colon biopsy
                                                                                                                          Characteristics
                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100042; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM6557065
                                                                                                                          sample_title: CNTO148UCO2001-100042 colon biopsy week 0
                                                                                                                          source_name: colon biopsy
                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100042; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                          GSM6557066

                                                                                                                          Uncertain

                                                                                                                          CNTO148UCO2001-100045 colon biopsy week 0

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • CNTO148UCO2001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100045; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                • CNTO148UCO2001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100045; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • CNTO148UCO2001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100045; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                  • CNTO148UCO2001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100045; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                colon biopsy
                                                                                                                                Characteristics
                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100045; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM6557066
                                                                                                                                sample_title: CNTO148UCO2001-100045 colon biopsy week 0
                                                                                                                                source_name: colon biopsy
                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100045; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                GSM6557068

                                                                                                                                Uncertain

                                                                                                                                CNTO148UCO2001-100046 colon biopsy week 0

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • CNTO148UCO2001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100046; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                      • CNTO148UCO2001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100046; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • CNTO148UCO2001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100046; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                        • CNTO148UCO2001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100046; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      colon biopsy
                                                                                                                                      Characteristics
                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100046; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM6557068
                                                                                                                                      sample_title: CNTO148UCO2001-100046 colon biopsy week 0
                                                                                                                                      source_name: colon biopsy
                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100046; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                      GSM6557069

                                                                                                                                      Uncertain

                                                                                                                                      CNTO148UCO2001-100047 colon biopsy week 0

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • CNTO148UCO2001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100047; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                            • CNTO148UCO2001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100047; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • CNTO148UCO2001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100047; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                              • CNTO148UCO2001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100047; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            colon biopsy
                                                                                                                                            Characteristics
                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100047; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM6557069
                                                                                                                                            sample_title: CNTO148UCO2001-100047 colon biopsy week 0
                                                                                                                                            source_name: colon biopsy
                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100047; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                            GSM6557071

                                                                                                                                            Uncertain

                                                                                                                                            CNTO148UCO2001-100050 colon biopsy week 0

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • CNTO148UCO2001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100050; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                  • CNTO148UCO2001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100050; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • CNTO148UCO2001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100050; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                    • CNTO148UCO2001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100050; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  colon biopsy
                                                                                                                                                  Characteristics
                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100050; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM6557071
                                                                                                                                                  sample_title: CNTO148UCO2001-100050 colon biopsy week 0
                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100050; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                  GSM6557072

                                                                                                                                                  Uncertain

                                                                                                                                                  CNTO148UCO2001-100051 colon biopsy week 0

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • CNTO148UCO2001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100051; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                        • CNTO148UCO2001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100051; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • CNTO148UCO2001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100051; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                          • CNTO148UCO2001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100051; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        colon biopsy
                                                                                                                                                        Characteristics
                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100051; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM6557072
                                                                                                                                                        sample_title: CNTO148UCO2001-100051 colon biopsy week 0
                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100051; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                        GSM6557074

                                                                                                                                                        Uncertain

                                                                                                                                                        CNTO148UCO2001-100052 colon biopsy week 0

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • CNTO148UCO2001-100052 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100052; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                              • CNTO148UCO2001-100052 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100052; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • CNTO148UCO2001-100052 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100052; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                • CNTO148UCO2001-100052 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100052; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              colon biopsy
                                                                                                                                                              Characteristics
                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100052; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM6557074
                                                                                                                                                              sample_title: CNTO148UCO2001-100052 colon biopsy week 0
                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100052; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                                              GSM6557075

                                                                                                                                                              Uncertain

                                                                                                                                                              CNTO148UCO2001-100053 colon biopsy week 0

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • CNTO148UCO2001-100053 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100053; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                    • CNTO148UCO2001-100053 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100053; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • CNTO148UCO2001-100053 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100053; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                      • CNTO148UCO2001-100053 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100053; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    colon biopsy
                                                                                                                                                                    Characteristics
                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100053; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM6557075
                                                                                                                                                                    sample_title: CNTO148UCO2001-100053 colon biopsy week 0
                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100053; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                    GSM6557076

                                                                                                                                                                    Uncertain

                                                                                                                                                                    CNTO148UCO2001-100054 colon biopsy week 0

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • CNTO148UCO2001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100054; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                          • CNTO148UCO2001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100054; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • CNTO148UCO2001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100054; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                            • CNTO148UCO2001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100054; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          colon biopsy
                                                                                                                                                                          Characteristics
                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100054; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM6557076
                                                                                                                                                                          sample_title: CNTO148UCO2001-100054 colon biopsy week 0
                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100054; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                          GSM6557078

                                                                                                                                                                          Uncertain

                                                                                                                                                                          CNTO148UCO2001-100058 colon biopsy week 0

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • CNTO148UCO2001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100058; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                • CNTO148UCO2001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100058; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • CNTO148UCO2001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100058; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                  • CNTO148UCO2001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100058; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                colon biopsy
                                                                                                                                                                                Characteristics
                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100058; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM6557078
                                                                                                                                                                                sample_title: CNTO148UCO2001-100058 colon biopsy week 0
                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100058; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                GSM6557079

                                                                                                                                                                                Uncertain

                                                                                                                                                                                CNTO148UCO2001-100062 colon biopsy week 0

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • CNTO148UCO2001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100062; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                      • CNTO148UCO2001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100062; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • CNTO148UCO2001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100062; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                        • CNTO148UCO2001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100062; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100062; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM6557079
                                                                                                                                                                                      sample_title: CNTO148UCO2001-100062 colon biopsy week 0
                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100062; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                      GSM6557080

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      CNTO148UCO2001-100064 colon biopsy week 0

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • CNTO148UCO2001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100064; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                            • CNTO148UCO2001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100064; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • CNTO148UCO2001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100064; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                              • CNTO148UCO2001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100064; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100064; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM6557080
                                                                                                                                                                                            sample_title: CNTO148UCO2001-100064 colon biopsy week 0
                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100064; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                            GSM6557082

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            CNTO148UCO2001-100065 colon biopsy week 0

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • CNTO148UCO2001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100065; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                  • CNTO148UCO2001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100065; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • CNTO148UCO2001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100065; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                    • CNTO148UCO2001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100065; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100065; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM6557082
                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100065 colon biopsy week 0
                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100065; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                  GSM6557083

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  CNTO148UCO2001-100066 colon biopsy week 0

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • CNTO148UCO2001-100066 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100066; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                        • CNTO148UCO2001-100066 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100066; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • CNTO148UCO2001-100066 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100066; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                          • CNTO148UCO2001-100066 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100066; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100066; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM6557083
                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100066 colon biopsy week 0
                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100066; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                        GSM6557084

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        CNTO148UCO2001-100067 colon biopsy week 0

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • CNTO148UCO2001-100067 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100067; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                              • CNTO148UCO2001-100067 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100067; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • CNTO148UCO2001-100067 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100067; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                • CNTO148UCO2001-100067 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100067; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100067; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM6557084
                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100067 colon biopsy week 0
                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100067; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                              GSM6557086

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              CNTO148UCO2001-100070 colon biopsy week 0

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • CNTO148UCO2001-100070 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100070; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                    • CNTO148UCO2001-100070 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100070; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • CNTO148UCO2001-100070 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100070; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                      • CNTO148UCO2001-100070 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100070; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100070; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM6557086
                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100070 colon biopsy week 0
                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100070; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                    GSM6557087

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    CNTO148UCO2001-100076 colon biopsy week 0

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • CNTO148UCO2001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100076; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                          • CNTO148UCO2001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100076; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • CNTO148UCO2001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100076; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                            • CNTO148UCO2001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100076; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100076; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM6557087
                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100076 colon biopsy week 0
                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100076; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                          GSM6557089

                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                          CNTO148UCO2001-100077 colon biopsy week 0

                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • CNTO148UCO2001-100077 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100077; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                • CNTO148UCO2001-100077 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100077; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • CNTO148UCO2001-100077 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100077; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                  • CNTO148UCO2001-100077 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100077; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                colon biopsy
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100077; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM6557089
                                                                                                                                                                                                                                sample_title: CNTO148UCO2001-100077 colon biopsy week 0
                                                                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100077; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                GSM6557090

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                CNTO148UCO2001-100078 colon biopsy week 0

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • CNTO148UCO2001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100078; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                      • CNTO148UCO2001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100078; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • CNTO148UCO2001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100078; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                        • CNTO148UCO2001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100078; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100078; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM6557090
                                                                                                                                                                                                                                      sample_title: CNTO148UCO2001-100078 colon biopsy week 0
                                                                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100078; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                      GSM6557092

                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                      CNTO148UCO2001-100079 colon biopsy week 0

                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • CNTO148UCO2001-100079 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100079; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                            • CNTO148UCO2001-100079 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100079; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • CNTO148UCO2001-100079 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100079; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                              • CNTO148UCO2001-100079 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100079; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100079; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM6557092
                                                                                                                                                                                                                                            sample_title: CNTO148UCO2001-100079 colon biopsy week 0
                                                                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100079; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                            GSM6557093

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            CNTO148UCO2001-100080 colon biopsy week 0

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • CNTO148UCO2001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100080; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                  • CNTO148UCO2001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100080; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • CNTO148UCO2001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100080; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                    • CNTO148UCO2001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100080; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100080; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM6557093
                                                                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100080 colon biopsy week 0
                                                                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100080; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                                                                                                                                  GSM6557094

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  CNTO148UCO2001-100081 colon biopsy week 0

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • CNTO148UCO2001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100081; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                        • CNTO148UCO2001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100081; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • CNTO148UCO2001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100081; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                          • CNTO148UCO2001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100081; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100081; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM6557094
                                                                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100081 colon biopsy week 0
                                                                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100081; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                                        GSM6557096

                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                        CNTO148UCO2001-100082 colon biopsy week 0

                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • CNTO148UCO2001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100082; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                              • CNTO148UCO2001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100082; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • CNTO148UCO2001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100082; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                • CNTO148UCO2001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100082; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100082; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM6557096
                                                                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100082 colon biopsy week 0
                                                                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100082; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                                                                                                                                              GSM6557097

                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                              CNTO148UCO2001-100084 colon biopsy week 0

                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100084; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100084; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100084; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100084; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100084; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM6557097
                                                                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100084 colon biopsy week 0
                                                                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100084; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                    GSM6557098

                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                    CNTO148UCO2001-100085 colon biopsy week 0

                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100085; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100085; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100085; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100085; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100085; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM6557098
                                                                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100085 colon biopsy week 0
                                                                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100085; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                          GSM6557100

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          CNTO148UCO2001-100086 colon biopsy week 0

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100086 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100086; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100086 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100086; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100086 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100086; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100086 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100086; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                colon biopsy
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100086; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM6557100
                                                                                                                                                                                                                                                                                sample_title: CNTO148UCO2001-100086 colon biopsy week 0
                                                                                                                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100086; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                GSM6557101

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                CNTO148UCO2001-100089 colon biopsy week 0

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100089; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100089; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100089; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100089; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100089; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM6557101
                                                                                                                                                                                                                                                                                      sample_title: CNTO148UCO2001-100089 colon biopsy week 0
                                                                                                                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100089; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                      GSM6557102

                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                      CNTO148UCO2001-100091 colon biopsy week 0

                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100091; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100091; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100091; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100091; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100091; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM6557102
                                                                                                                                                                                                                                                                                            sample_title: CNTO148UCO2001-100091 colon biopsy week 0
                                                                                                                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100091; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                            GSM6557104

                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                            CNTO148UCO2001-100092 colon biopsy week 0

                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100092; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100092; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100092; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100092; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100092; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM6557104
                                                                                                                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100092 colon biopsy week 0
                                                                                                                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100092; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                  GSM6557105

                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                  CNTO148UCO2001-100095 colon biopsy week 0

                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100095; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100095; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100095; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100095; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100095; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM6557105
                                                                                                                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100095 colon biopsy week 0
                                                                                                                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100095; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                        GSM6557106

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        CNTO148UCO2001-100097 colon biopsy week 0

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100097; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100097; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100097; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100097; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100097; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM6557106
                                                                                                                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100097 colon biopsy week 0
                                                                                                                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100097; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                              GSM6557108

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              CNTO148UCO2001-100099 colon biopsy week 0

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100099 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100099; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100099 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100099; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100099 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100099; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100099 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100099; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100099; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6557108
                                                                                                                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100099 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100099; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                                                                                                    GSM6557109

                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                    CNTO148UCO2001-100100 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100100; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100100; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100100; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100100; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100100; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6557109
                                                                                                                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100100 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100100; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                          GSM6557110

                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                          CNTO148UCO2001-100102 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100102; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100102; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100102; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100102; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                colon biopsy
                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100102; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6557110
                                                                                                                                                                                                                                                                                                                                sample_title: CNTO148UCO2001-100102 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100102; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                                                                                                                GSM6557112

                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                CNTO148UCO2001-100103 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100103; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100103; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100103; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100103; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100103; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6557112
                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO148UCO2001-100103 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100103; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                      GSM6557113

                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                      CNTO148UCO2001-100104 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100104 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100104; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100104 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100104; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100104 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100104; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100104 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100104; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100104; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6557113
                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO148UCO2001-100104 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100104; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                            GSM6557115

                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                            CNTO148UCO2001-100105 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100105 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100105; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100105 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100105; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100105 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100105; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100105 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100105; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100105; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6557115
                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100105 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100105; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                  GSM6557116

                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                  CNTO148UCO2001-100107 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100107 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100107; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100107 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100107; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100107 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100107; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100107 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100107; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100107; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6557116
                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100107 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100107; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                                                                                                                                        GSM6557118

                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                        CNTO148UCO2001-100111 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100111; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100111; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100111; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100111; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100111; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6557118
                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100111 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100111; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                              GSM6557119

                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                              CNTO148UCO2001-100112 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100112; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100112; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100112; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100112; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100112; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6557119
                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100112 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100112; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                                                                                                                                                    GSM6557120

                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                    CNTO148UCO2001-100114 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100114; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100114; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100114; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100114; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100114; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6557120
                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100114 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100114; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                          GSM6557122

                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                          CNTO148UCO2001-100116 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100116; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100116; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100116; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100116; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100116; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6557122
                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO148UCO2001-100116 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100116; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                GSM6557123

                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                CNTO148UCO2001-100117 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100117 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100117; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100117 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100117; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100117 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100117; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100117 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100117; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100117; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6557123
                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO148UCO2001-100117 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100117; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                      GSM6557124

                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                      CNTO148UCO2001-100119 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100119 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100119; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100119 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100119; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100119 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100119; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100119 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100119; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100119; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6557124
                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO148UCO2001-100119 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100119; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                            GSM6557126

                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                            CNTO148UCO2001-100120 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100120 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100120; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100120 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100120; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100120 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100120; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100120 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100120; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100120; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6557126
                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100120 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100120; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                  GSM6557127

                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                  CNTO148UCO2001-100121 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100121; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100121; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100121; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100121; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100121; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y
                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6557127
                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100121 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100121; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: Y

                                                                                                                                                                                                                                                                                                                                                                                                        GSM6557128

                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                        CNTO148UCO2001-100123 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100123; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100123; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100123; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100123; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100123; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6557128
                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100123 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100123; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                              GSM6557130

                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                              CNTO148UCO2001-100126 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100126; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100126; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100126; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100126; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100126; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6557130
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100126 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100126; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6557131

                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO148UCO2001-100131 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100131; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100131; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100131; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100131; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100131; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6557131
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100131 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100131; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6557132

                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO148UCO2001-100132 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100132; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100132; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100132; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100132; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100132; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6557132
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO148UCO2001-100132 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100132; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6557134

                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO148UCO2001-100134 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100134; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100134; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100134; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100134; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100134; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6557134
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO148UCO2001-100134 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100134; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6557135

                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO148UCO2001-100139 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100139; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100139; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100139; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100139; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100139; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6557135
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO148UCO2001-100139 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100139; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6557136

                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO148UCO2001-100146 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100146; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100146; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100146; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100146; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100146; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6557136
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100146 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100146; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6557138

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO148UCO2001-100150 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100150; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100150; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100150; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100150; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100150; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6557138
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100150 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100150; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6557139

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO148UCO2001-100151 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100151; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100151; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100151; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100151; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100151; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6557139
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100151 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100151; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6557141

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO148UCO2001-100152 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100152; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100152; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100152; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100152; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100152; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6557141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100152 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100152; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6557142

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO148UCO2001-100154 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100154; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100154; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100154; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100154; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100154; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6557142
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100154 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100154; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM6557144

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNTO148UCO2001-100158 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100158 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100158; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100158 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100158; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100158 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100158; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100158 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100158; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tissue: colon; donor id: CNTO148UCO2001-100158; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM6557144
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: CNTO148UCO2001-100158 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: tissue: colon; donor id: CNTO148UCO2001-100158; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM6557145

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CNTO148UCO2001-100160 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100160; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100160; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100160; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100160; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tissue: colon; donor id: CNTO148UCO2001-100160; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM6557145
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: CNTO148UCO2001-100160 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: tissue: colon; donor id: CNTO148UCO2001-100160; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM6557147

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CNTO148UCO2001-100161 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100161; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100161; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100161; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100161; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tissue: colon; donor id: CNTO148UCO2001-100161; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM6557147
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: CNTO148UCO2001-100161 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: tissue: colon; donor id: CNTO148UCO2001-100161; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM6557148

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CNTO148UCO2001-100162 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100162; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • CNTO148UCO2001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100162; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100162; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100162; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tissue: colon; donor id: CNTO148UCO2001-100162; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM6557148
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: CNTO148UCO2001-100162 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: tissue: colon; donor id: CNTO148UCO2001-100162; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM6557149

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CNTO148UCO2001-100163 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100163 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100163; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • CNTO148UCO2001-100163 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100163; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100163 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100163; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100163 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100163; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tissue: colon; donor id: CNTO148UCO2001-100163; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM6557149
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: CNTO148UCO2001-100163 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: tissue: colon; donor id: CNTO148UCO2001-100163; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM6557151

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CNTO148UCO2001-100164 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100164; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • CNTO148UCO2001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100164; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100164; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • CNTO148UCO2001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100164; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tissue: colon; donor id: CNTO148UCO2001-100164; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM6557151
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: CNTO148UCO2001-100164 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: tissue: colon; donor id: CNTO148UCO2001-100164; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM6557152

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CNTO148UCO2001-100167 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100167; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • CNTO148UCO2001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100167; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100167; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • CNTO148UCO2001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100167; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tissue: colon; donor id: CNTO148UCO2001-100167; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM6557152
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: CNTO148UCO2001-100167 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: tissue: colon; donor id: CNTO148UCO2001-100167; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: N; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM6557153

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CNTO148UCO2001-100168 colon biopsy week 0

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100168; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • CNTO148UCO2001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100168; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100168; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • CNTO148UCO2001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO148UCO2001-100168; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tissue: colon; donor id: CNTO148UCO2001-100168; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM6557153
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: CNTO148UCO2001-100168 colon biopsy week 0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: colon biopsy
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: tissue: colon; donor id: CNTO148UCO2001-100168; visit: week 0; diagnosis: ulcerative colitis; treatment: golimumab 200mg; mucosal healing at week 6: Y; clinical remission at week 6: N

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          No excluded samples.