GSE215285

Regional transcriptomics and proteomics of DMPK genes in human intestine

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

49 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 61 samples
Specimen: Tissue
Reported/interpreted study design: Unclear study design Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Fujioka H, Murata M, Yokota J, Okada K, Yamashita T, Hirayama D, Kawakami K, Morinaga G, Saito A, Nakase H, Kishimoto W, Mizuguchi H
Contact name: Hijiri Fujioka
Submission date: 2022-10-12
Last update: 2023-05-08
Organization: NBI
Department: Not available
Public date: 2023-05-08
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL20301 Illumina HiSeq 4000 (Homo sapiens); GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA889700

Summary

The intestine is an organ responsible for absorption and metabolism of orally administered drugs. It is necessary to examine the human intestinal expression profiles of the genes related to drug absorption, distribution, metabolism, and excretion (ADME), for accurate prediction of pharmacokinetics in the intestine. However, previous studies had issues such as the evaluation limited to specific molecules and regions, and relatively small sample sizes. In this study, to obtain more accurate expression profiles of mRNA and protein in various regions of human intestine, biopsy samples were collected from 38 patients with various regions, duodenum, jejunum, ileum, colon and rectum, and RNA-seq analysis and quantitative proteomics analysis were performed. We performed the expression analysis of drug-metabolizing enzymes (cytochromes P450 (CYP ) and non–CYP enzymes), apical and basolateral drug transporters, and nuclear receptors. Overall, mRNA expression levels of these ADME-related molecules were highly correlated with the protein expression levels. The characteristics of the expression of ADME-related genes in human small and large intestines differed significantly, such as higher or lower expression levels of CYP enzymes in the small or large intestines, respectively. Most CYPs were expressed dominantly in the small intestine. Non-CYPs were expressed in the large intestine, but their expression levels were lower than those in the small intestine. The expression levels of ADME-related genes differed even between the proximal and distal small intestine. The expression of transporters showed their highest abundance in the ileum. The data in the present study contributes to an improved understanding of intestinal ADME of drug candidates, and would be useful for drug discovery research.

Overall design

RNA expression profiles of Intestinal biopsies

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 61 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication Regional Transcriptomics and Proteomics of Pharmacokinetics-Related Genes in Human Intestine. Molecular pharmaceutics, 2023 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

93 pts

Clarity: 93%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Only one side of the comparison is clearly grouped. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Not ready

43% DE readiness

Contrast completeness

10/25 pts

Only one side of the contrast is present; downstream DE needs both groups.

Minimum group size

0/20 pts

Minimum group size cannot be evaluated until a complete contrast exists.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

0/10 pts

Critical warnings must be resolved before downstream analysis.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No complete case/control contrast is available.
12 samples are still unassigned.
Critical dataset warnings must be resolved.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.
Resolve critical warnings before downstream analysis.

Analysis Preparation Checklist

3/6 ready

Group labels reviewed

Blocked

No complete case/control grouping exists yet.

Review the sample grouping table and assign both case and control groups.

Minimum sample count met

Blocked

At least one group has fewer than 2 samples.

Choose a larger dataset or merge only scientifically valid groups.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 12 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

Analysis preparation checklist contains blocked items.

No complete case/control or treatment/control contrast is available.

At least one comparison group has fewer than two samples.

One or more samples are unassigned and need manual grouping decisions.

Critical dataset warnings are present.

Study design is model-system or unclear and should be reviewed before analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Inflammatory bowel disease Disease context came from Normalization rules.
Likely case group Inflammatory bowel disease 49 samples
Likely control group No control group detected 0 samples

Intent Interpretation

Downgrade or exclusion reason Comparison: Unclear study design. Specimen: Tissue. Comparison suitability: 0%. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Inflammatory bowel disease.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 37132462.
Publication context: Regional Transcriptomics and Proteomics of Pharmacokinetics-Related Genes in Human Intestine.. Molecular pharmaceutics, 2023. PMID 37132462. DOI 10.1021/acs.molpharmaceut.2c01002.

Cautions

Comparison: Unclear study design. Specimen: Tissue. Comparison suitability: 0%.
Downgraded for tissue search because study design or specimen source is unclear.
Unclear study design downgraded for patient tissue tumor-vs-normal search intent.
Missing or unclear metadata. Unclear study design downgraded for patient tissue tumor-vs-normal search intent.
Overall score capped because comparison suitability is weak for the selected search intent.
Missing or unclear metadata. Comparison - Unclear study design. Specimen - Tissue. Comparison suitability: 0%.
Missing or unclear metadata. Downgraded for tissue search because study design or specimen source is unclear.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

No clear control group was detected from normalized metadata.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Patient-tissue tumor-normal intent requires clear tumor-normal grouping.

Normalized Fields

147 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM6631163 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum tissue: Rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631164 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631166 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631167 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631168 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631170 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631171 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631172 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631174 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631175 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum tissue: Rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631176 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631177 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631178 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631179 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631180 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631181 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631182 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum tissue: Rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM6631193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM6631195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074267 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-04 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074268 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-06 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074270 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-12 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074271 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-24 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074272 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-25 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074273 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-26 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074276 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-13 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074277 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-27 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074278 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum sample_title: Rectum-02 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074279 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-14 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074280 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-02 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074281 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum sample_title: Rectum-01 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074283 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-03 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074284 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-02 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074285 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-04 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074286 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-03 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074287 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-05 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM7074288 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum sample_title: Ileum-15 sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM7074289 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon sample_title: Colon-28 sample-anatomical-source-v1 sample-local anatomical source

assay_type bulk RNA-seq GSE215285 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE215285 dataset_title: Regional transcriptomics and proteomics of DMPK genes in human intestine organism: Homo sapiens assay_type: bulk RNA-seq processed_da... keyword match keyword match: bulk rna-seq

disease inflammatory bowel disease GSM6631166 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-05 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 61; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631167 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-07 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 61; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631168 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-08 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 34; Sex: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631169 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Duodenum-07 Duodenum disease state: IBD; tissue: Duodenum; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631170 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-06 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631171 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-09 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631172 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-07 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631173 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Duodenum-11 Duodenum disease state: IBD; tissue: Duodenum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631174 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-08 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 62; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631175 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Rectum-03 Rectum disease state: IBD; tissue: Rectum; sampling region: non-inflammatory area; age: 62; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631176 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-22 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 60; Sex: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631177 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-11 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 33; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631178 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-12 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 59; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631179 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-09 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631180 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-23 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 56; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631181 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-14 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 45; Sex: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631182 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-10 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631183 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Rectum-05 Rectum disease state: IBD; tissue: Rectum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631185 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-16 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 22; Sex: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631186 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-17 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 21; Sex: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631188 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-19 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 57; Sex: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631189 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-01 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 26; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631190 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-01 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 26; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631192 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-20 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 59; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631193 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-21 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 37; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM6631195 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-11 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 48; Sex: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074267 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-04 IBD tissue: IBD; sampling region: non-inflammatory area; age: 33; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074268 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-06 IBD tissue: IBD; sampling region: non-inflammatory area; age: 33; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074269 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Duodenum-04 IBD tissue: IBD; sampling region: non-inflammatory area; age: 53; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074270 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-12 IBD tissue: IBD; sampling region: non-inflammatory area; age: 54; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074271 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-24 IBD tissue: IBD; sampling region: non-inflammatory area; age: 22; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074272 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-25 IBD tissue: IBD; sampling region: non-inflammatory area; age: 22; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074273 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-26 IBD tissue: IBD; sampling region: non-inflammatory area; age: 40; genotype: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074274 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Duodenum-03 IBD tissue: IBD; sampling region: non-inflammatory area; age: 42; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074275 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Duodenum-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 54; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074276 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-13 IBD tissue: IBD; sampling region: non-inflammatory area; age: 26; genotype: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074277 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-27 IBD tissue: IBD; sampling region: non-inflammatory area; age: 26; genotype: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074278 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Rectum-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 54; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074279 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-14 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074280 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074281 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Rectum-01 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074282 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Duodenum-01 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074283 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-03 IBD tissue: IBD; sampling region: non-inflammatory area; age: 27; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074284 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 44; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074285 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-04 IBD tissue: IBD; sampling region: non-inflammatory area; age: 44; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074286 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-03 IBD tissue: IBD; sampling region: non-inflammatory area; age: 23; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074287 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-05 IBD tissue: IBD; sampling region: non-inflammatory area; age: 23; genotype: male; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074288 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Ileum-15 IBD tissue: IBD; sampling region: non-inflammatory area; age: 29; genotype: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM7074289 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon-28 IBD tissue: IBD; sampling region: non-inflammatory area; age: 29; genotype: female; race: Japanese controlled vocabulary controlled vocabulary disease match: ibd

organism Homo sapiens GSE215285 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE215285 dataset_title: Regional transcriptomics and proteomics of DMPK genes in human intestine organism: Homo sapiens assay_type: bulk RNA-seq processed_da... keyword match keyword match: homo sapiens

tissue colon GSE215285 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE215285 dataset_title: Regional transcriptomics and proteomics of DMPK genes in human intestine organism: Homo sapiens assay_type: bulk RNA-seq processed_da... controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSE215285 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence intestine dataset_accession: GSE215285 dataset_title: Regional transcriptomics and proteomics of DMPK genes in human intestine organism: Homo sapiens assay_type: bulk RNA-seq processed_da... controlled vocabulary controlled vocabulary tissue match: intestine

tissue colon GSM6631163 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum Rectum-04 Rectum disease state: non; tissue: Rectum; sampling region: non-inflammatory area; age: 72; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: rectum

tissue colon GSM6631164 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-13 Colon disease state: non; tissue: Colon; sampling region: non-inflammatory area; age: 71; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631166 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-05 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 61; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM6631167 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-07 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 61; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631168 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-08 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 34; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631170 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-06 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM6631171 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-09 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631172 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-07 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 34; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM6631174 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-08 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 62; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM6631175 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum Rectum-03 Rectum disease state: IBD; tissue: Rectum; sampling region: non-inflammatory area; age: 62; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: rectum

tissue colon GSM6631176 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-22 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 60; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631177 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-11 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 33; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631178 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-12 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 59; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631179 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-09 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM6631180 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-23 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 56; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631181 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-14 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 45; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631182 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-10 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM6631183 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum Rectum-05 Rectum disease state: IBD; tissue: Rectum; sampling region: non-inflammatory area; age: 31; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: rectum

tissue colon GSM6631184 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-15 Colon disease state: non; tissue: Colon; sampling region: non-inflammatory area; age: 43; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631185 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-16 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 22; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631186 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-17 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 21; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631187 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-18 Colon disease state: non; tissue: Colon; sampling region: non-inflammatory area; age: 63; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631188 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-19 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 57; Sex: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631189 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-01 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 26; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM6631190 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-01 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 26; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631192 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-20 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 59; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM6631193 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-21 Colon disease state: IBD; tissue: Colon; sampling region: non-inflammatory area; age: 37; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM6631195 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-11 Ileum disease state: IBD; tissue: Ileum; sampling region: non-inflammatory area; age: 48; Sex: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM7074267 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-04 IBD tissue: IBD; sampling region: non-inflammatory area; age: 33; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074268 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-06 IBD tissue: IBD; sampling region: non-inflammatory area; age: 33; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM7074270 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-12 IBD tissue: IBD; sampling region: non-inflammatory area; age: 54; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074271 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-24 IBD tissue: IBD; sampling region: non-inflammatory area; age: 22; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM7074272 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-25 IBD tissue: IBD; sampling region: non-inflammatory area; age: 22; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM7074273 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-26 IBD tissue: IBD; sampling region: non-inflammatory area; age: 40; genotype: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM7074276 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-13 IBD tissue: IBD; sampling region: non-inflammatory area; age: 26; genotype: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074277 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-27 IBD tissue: IBD; sampling region: non-inflammatory area; age: 26; genotype: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM7074278 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum Rectum-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 54; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: rectum

tissue intestine GSM7074279 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-14 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074280 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM7074281 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum Rectum-01 IBD tissue: IBD; sampling region: non-inflammatory area; age: 51; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: rectum

tissue colon GSM7074283 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-03 IBD tissue: IBD; sampling region: non-inflammatory area; age: 27; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM7074284 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-02 IBD tissue: IBD; sampling region: non-inflammatory area; age: 44; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074285 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-04 IBD tissue: IBD; sampling region: non-inflammatory area; age: 44; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM7074286 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-03 IBD tissue: IBD; sampling region: non-inflammatory area; age: 23; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074287 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-05 IBD tissue: IBD; sampling region: non-inflammatory area; age: 23; genotype: male; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM7074288 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum Ileum-15 IBD tissue: IBD; sampling region: non-inflammatory area; age: 29; genotype: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM7074289 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-28 IBD tissue: IBD; sampling region: non-inflammatory area; age: 29; genotype: female; race: Japanese controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

61 rows shown Show Hide

Study totals: Case 49 | Control 0 | Unassigned 12 | Excluded 0 | Ambiguous 0 61 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Inflammatory bowel disease	Case	GSM6631166	Ileum-05	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 61; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631167	Colon-07	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 61; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631168	Colon-08	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 34; Sex: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631169	Duodenum-07	Duodenum Disease state: IBD; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 34; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631170	Ileum-06	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 34; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631171	Colon-09	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 34; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631172	Ileum-07	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 34; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631173	Duodenum-11	Duodenum Disease state: IBD; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 31; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631174	Ileum-08	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 62; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631175	Rectum-03	Rectum Disease state: IBD; Tissue: Rectum; Sampling region: Non-inflammatory area; Age: 62; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631176	Colon-22	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 60; Sex: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631177	Colon-11	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 33; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631178	Colon-12	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 59; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631179	Ileum-09	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 31; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631180	Colon-23	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 56; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631181	Colon-14	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 45; Sex: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631182	Ileum-10	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 31; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631183	Rectum-05	Rectum Disease state: IBD; Tissue: Rectum; Sampling region: Non-inflammatory area; Age: 31; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631185	Colon-16	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 22; Sex: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631186	Colon-17	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 21; Sex: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631188	Colon-19	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 57; Sex: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631189	Ileum-01	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 26; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631190	Colon-01	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 26; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631192	Colon-20	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 59; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631193	Colon-21	Colon Disease state: IBD; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 37; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM6631195	Ileum-11	Ileum Disease state: IBD; Tissue: Ileum; Sampling region: Non-inflammatory area; Age: 48; Sex: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074267	Ileum-04	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 33; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074268	Colon-06	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 33; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074269	Duodenum-04	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 53; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074270	Ileum-12	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 54; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074271	Colon-24	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 22; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074272	Colon-25	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 22; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074273	Colon-26	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 40; Genotype: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074274	Duodenum-03	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 42; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074275	Duodenum-02	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 54; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074276	Ileum-13	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 26; Genotype: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074277	Colon-27	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 26; Genotype: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074278	Rectum-02	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 54; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074279	Ileum-14	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 51; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074280	Colon-02	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 51; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074281	Rectum-01	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 51; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074282	Duodenum-01	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 51; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074283	Colon-03	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 27; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074284	Ileum-02	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 44; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074285	Colon-04	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 44; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074286	Ileum-03	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 23; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074287	Colon-05	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 23; Genotype: Male; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074288	Ileum-15	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 29; Genotype: Female; Race: Japanese	Case marker detected.
Inflammatory bowel disease	Case	GSM7074289	Colon-28	IBD Tissue: IBD; Sampling region: Non-inflammatory area; Age: 29; Genotype: Female; Race: Japanese	Case marker detected.
Unassigned	Unassigned	GSM6631159	Duodenum-05	Duodenum Disease state: Non; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 44; Sex: Female; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631160	Duodenum-06	Duodenum Disease state: Non; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 70; Sex: Female; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631161	Duodenum-09	Duodenum Disease state: Non; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 26; Sex: Female; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631162	Duodenum-10	Duodenum Disease state: Non; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 74; Sex: Male; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631163	Rectum-04	Rectum Disease state: Non; Tissue: Rectum; Sampling region: Non-inflammatory area; Age: 72; Sex: Male; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631164	Colon-13	Colon Disease state: Non; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 71; Sex: Female; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631165	Duodenum-12	Duodenum Disease state: Non; Tissue: Duodenum; Sampling region: Non-inflammatory area; Age: 20; Sex: Male; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631184	Colon-15	Colon Disease state: Non; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 43; Sex: Female; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631187	Colon-18	Colon Disease state: Non; Tissue: Colon; Sampling region: Non-inflammatory area; Age: 63; Sex: Male; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631191	Jejunum-01	Jejunum Disease state: Non; Tissue: Jejunum; Sampling region: Non-inflammatory area; Age: 78; Sex: Male; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631194	Jejunum-02	Jejunum Disease state: Non; Tissue: Jejunum; Sampling region: Non-inflammatory area; Age: 61; Sex: Male; Race: Japanese	No explicit case or control marker detected.
Unassigned	Unassigned	GSM6631196	Jejunum-03	Jejunum Disease state: Non; Tissue: Jejunum; Sampling region: Non-inflammatory area; Age: 35; Sex: Male; Race: Japanese	No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort