Matching samples

GSE228122 · Bulk RNA-seq of whole biopsies and enteroids/colonoids from terminal ileum and rectum of inflammatory bowel disease patients or control subjects

Download matching samples CSV

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

28 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (58)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM7114706

Uncertain

biopsy data from sample 1204719929

Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1204719929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114706
sample_title: biopsy data from sample 1204719929
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114707

Uncertain

biopsy data from sample 1375752274

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1375752274 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 1375752274 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1375752274 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 1375752274 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114707
sample_title: biopsy data from sample 1375752274
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114708

Uncertain

biopsy data from sample 1643751206

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1643751206 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 1643751206 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1643751206 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 1643751206 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114708
sample_title: biopsy data from sample 1643751206
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

GSM7114709

Uncertain

biopsy data from sample 1737224884

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1737224884 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114709
sample_title: biopsy data from sample 1737224884
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114710

Uncertain

biopsy data from sample 1878769109

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 1878769109 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114710
sample_title: biopsy data from sample 1878769109
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114711

Uncertain

biopsy data from sample 2071726996

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2071726996 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 2071726996 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2071726996 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 2071726996 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114711
sample_title: biopsy data from sample 2071726996
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114712

Uncertain

biopsy data from sample 2087695933

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 2087695933 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114712
sample_title: biopsy data from sample 2087695933
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114713

Uncertain

biopsy data from sample 2356159714

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2356159714 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 2356159714 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2356159714 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 2356159714 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114713
sample_title: biopsy data from sample 2356159714
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

GSM7114714

Uncertain

biopsy data from sample 2426597717

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2426597717 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 2426597717 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2426597717 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 2426597717 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114714
sample_title: biopsy data from sample 2426597717
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114715

Uncertain

biopsy data from sample 2646146994

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2646146994 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 2646146994 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2646146994 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 2646146994 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114715
sample_title: biopsy data from sample 2646146994
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114716

Uncertain

biopsy data from sample 2848225596

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2848225596 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 2848225596 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 2848225596 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 2848225596 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114716
sample_title: biopsy data from sample 2848225596
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

GSM7114717

Uncertain

biopsy data from sample 3028669805

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3028669805 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 3028669805 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3028669805 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 3028669805 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114717
sample_title: biopsy data from sample 3028669805
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114718

Uncertain

biopsy data from sample 3179088571

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3179088571 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114718
sample_title: biopsy data from sample 3179088571
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114719

Uncertain

biopsy data from sample 3269365601

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3269365601 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 3269365601 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3269365601 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 3269365601 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114719
sample_title: biopsy data from sample 3269365601
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114720

Uncertain

biopsy data from sample 3312689543

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3312689543 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 3312689543 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3312689543 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 3312689543 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114720
sample_title: biopsy data from sample 3312689543
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114721

Uncertain

biopsy data from sample 3359263969

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3359263969 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114721
sample_title: biopsy data from sample 3359263969
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114722

Uncertain

biopsy data from sample 3552931053

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3552931053 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114722
sample_title: biopsy data from sample 3552931053
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114723

Uncertain

biopsy data from sample 3553318929

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3553318929 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114723
sample_title: biopsy data from sample 3553318929
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114724

Uncertain

biopsy data from sample 3631280583

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3631280583 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114724
sample_title: biopsy data from sample 3631280583
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114725

Uncertain

biopsy data from sample 3684376931

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3684376931 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 3684376931 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3684376931 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 3684376931 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114725
sample_title: biopsy data from sample 3684376931
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

GSM7114726

Uncertain

biopsy data from sample 3723636182

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3723636182 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114726
sample_title: biopsy data from sample 3723636182
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114727

Uncertain

biopsy data from sample 3818749482

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 3818749482 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114727
sample_title: biopsy data from sample 3818749482
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114728

Uncertain

biopsy data from sample 3943331569

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3943331569 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 3943331569 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 3943331569 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 3943331569 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114728
sample_title: biopsy data from sample 3943331569
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114729

Uncertain

biopsy data from sample 4001235543

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4001235543 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 4001235543 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4001235543 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 4001235543 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114729
sample_title: biopsy data from sample 4001235543
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

GSM7114730

Uncertain

biopsy data from sample 4028176603

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4028176603 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114730
sample_title: biopsy data from sample 4028176603
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114731

Uncertain

biopsy data from sample 4181037523

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4181037523 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 4181037523 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4181037523 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 4181037523 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114731
sample_title: biopsy data from sample 4181037523
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114732

Uncertain

biopsy data from sample 4291720641

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4291720641 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114732
sample_title: biopsy data from sample 4291720641
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114733

Uncertain

biopsy data from sample 4304050535

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 4304050535 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114733
sample_title: biopsy data from sample 4304050535
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114734

Uncertain

biopsy data from sample 4379496952

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4379496952 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: icCD
- biopsy data from sample 4379496952 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: icCD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4379496952 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: icCD
- biopsy data from sample 4379496952 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: icCD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: icCD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114734
sample_title: biopsy data from sample 4379496952
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: icCD

GSM7114735

Uncertain

biopsy data from sample 4538991461

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4538991461 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 4538991461 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 4538991461 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 4538991461 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114735
sample_title: biopsy data from sample 4538991461
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114736

Uncertain

biopsy data from sample 5395385401

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5395385401 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 5395385401 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5395385401 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 5395385401 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114736
sample_title: biopsy data from sample 5395385401
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114737

Uncertain

biopsy data from sample 5792732371

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5792732371 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114737
sample_title: biopsy data from sample 5792732371
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114738

Uncertain

biopsy data from sample 5939318740

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 5939318740 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114738
sample_title: biopsy data from sample 5939318740
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114739

Uncertain

biopsy data from sample 6195746358

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6195746358 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 6195746358 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6195746358 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 6195746358 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114739
sample_title: biopsy data from sample 6195746358
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114740

Uncertain

biopsy data from sample 6332115407

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6332115407 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114740
sample_title: biopsy data from sample 6332115407
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114741

Uncertain

biopsy data from sample 6421694263

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6421694263 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114741
sample_title: biopsy data from sample 6421694263
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114742

Uncertain

biopsy data from sample 6445622918

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6445622918 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114742
sample_title: biopsy data from sample 6445622918
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114743

Uncertain

biopsy data from sample 6662556960

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6662556960 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 6662556960 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6662556960 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 6662556960 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114743
sample_title: biopsy data from sample 6662556960
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114744

Uncertain

biopsy data from sample 6733092745

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6733092745 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: icCD
- biopsy data from sample 6733092745 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: icCD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6733092745 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: icCD
- biopsy data from sample 6733092745 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: icCD

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: icCD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114744
sample_title: biopsy data from sample 6733092745
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: icCD

GSM7114745

Uncertain

biopsy data from sample 6739821734

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 6739821734 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114745
sample_title: biopsy data from sample 6739821734
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114746

Uncertain

biopsy data from sample 6838739690

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6838739690 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 6838739690 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 6838739690 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 6838739690 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114746
sample_title: biopsy data from sample 6838739690
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114747

Uncertain

biopsy data from sample 7051356862

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7051356862 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 7051356862 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7051356862 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 7051356862 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114747
sample_title: biopsy data from sample 7051356862
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114748

Uncertain

biopsy data from sample 7139077478

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7139077478 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114748
sample_title: biopsy data from sample 7139077478
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114749

Uncertain

biopsy data from sample 7143294781

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7143294781 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114749
sample_title: biopsy data from sample 7143294781
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114750

Uncertain

biopsy data from sample 7214955558

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7214955558 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 7214955558 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7214955558 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
- biopsy data from sample 7214955558 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114750
sample_title: biopsy data from sample 7214955558
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: IBDU

GSM7114751

Uncertain

biopsy data from sample 7800901725

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7800901725 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114751
sample_title: biopsy data from sample 7800901725
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114752

Uncertain

biopsy data from sample 7807216273

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 7807216273 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114752
sample_title: biopsy data from sample 7807216273
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114753

Uncertain

biopsy data from sample 8081214457

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8081214457 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114753
sample_title: biopsy data from sample 8081214457
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114754

Uncertain

biopsy data from sample 8672611246

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8672611246 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 8672611246 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8672611246 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 8672611246 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114754
sample_title: biopsy data from sample 8672611246
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114755

Uncertain

biopsy data from sample 8766675562

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8766675562 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 8766675562 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8766675562 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
- biopsy data from sample 8766675562 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114755
sample_title: biopsy data from sample 8766675562
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: CD

GSM7114756

Uncertain

biopsy data from sample 8986797186

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 8986797186 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114756
sample_title: biopsy data from sample 8986797186
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114757

Uncertain

biopsy data from sample 9096494786

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9096494786 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 9096494786 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9096494786 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 9096494786 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114757
sample_title: biopsy data from sample 9096494786
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114758

Uncertain

biopsy data from sample 9325947159

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9325947159 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114758
sample_title: biopsy data from sample 9325947159
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114759

Uncertain

biopsy data from sample 9433080982

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9433080982 Rectum tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114759
sample_title: biopsy data from sample 9433080982
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114760

Uncertain

biopsy data from sample 9695702256

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9695702256 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 9695702256 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9695702256 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 9695702256 Rectum tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Rectum
Characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114760
sample_title: biopsy data from sample 9695702256
source_name: Rectum
characteristics: tissue: Rectum; cell type: biopsy; disease state: IBD; diagnosis: UC

GSM7114761

Uncertain

biopsy data from sample 9823004282

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9823004282 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114761
sample_title: biopsy data from sample 9823004282
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114762

Uncertain

biopsy data from sample 9940753211

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
- biopsy data from sample 9940753211 Ileum tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114762
sample_title: biopsy data from sample 9940753211
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: NPD; diagnosis: CTR

GSM7114763

Uncertain

biopsy data from sample 9971793399

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9971793399 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 9971793399 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- biopsy data from sample 9971793399 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
- biopsy data from sample 9971793399 Ileum tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

Source metadata

Source name: Ileum
Characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114763
sample_title: biopsy data from sample 9971793399
source_name: Ileum
characteristics: tissue: Ileum; cell type: biopsy; disease state: IBD; diagnosis: UC

Excluded samples (57)

GSM7114764

Excluded

organoid data from sample 40002596246

Excluded by the study grouping rules. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Normalized exclusion flag detected: organoid.

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40002596246 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40002596246 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114764
sample_title: organoid data from sample  40002596246
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114765

Excluded

organoid data from sample 40021655987

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40021655987 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40021655987 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114765
sample_title: organoid data from sample  40021655987
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114766

Excluded

organoid data from sample 40066983148

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40066983148 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40066983148 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114766
sample_title: organoid data from sample  40066983148
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114767

Excluded

organoid data from sample 40085042880

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40085042880 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40085042880 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114767
sample_title: organoid data from sample  40085042880
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114768

Excluded

organoid data from sample 40103927684

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40103927684 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40103927684 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114768
sample_title: organoid data from sample  40103927684
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114769

Excluded

organoid data from sample 40120371040

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40120371040 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40120371040 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114769
sample_title: organoid data from sample  40120371040
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114770

Excluded

organoid data from sample 40149430782

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40149430782 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: icCD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40149430782 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: icCD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: icCD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114770
sample_title: organoid data from sample  40149430782
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: icCD

GSM7114771

Excluded

organoid data from sample 40167315587

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40167315587 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40167315587 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114771
sample_title: organoid data from sample  40167315587
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114772

Excluded

organoid data from sample 40184868943

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40184868943 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40184868943 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114772
sample_title: organoid data from sample  40184868943
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU

GSM7114773

Excluded

organoid data from sample 40187474238

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40187474238 rectum tissue: rectum; cell type: organoid; disease state: NA; diagnosis: icCD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40187474238 rectum tissue: rectum; cell type: organoid; disease state: NA; diagnosis: icCD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NA; diagnosis: icCD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114773
sample_title: organoid data from sample  40187474238
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NA; diagnosis: icCD

GSM7114774

Excluded

organoid data from sample 40205268033

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40205268033 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40205268033 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114774
sample_title: organoid data from sample  40205268033
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114775

Excluded

organoid data from sample 40221702489

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40221702489 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40221702489 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114775
sample_title: organoid data from sample  40221702489
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU

GSM7114776

Excluded

organoid data from sample 40238256845

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40238256845 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40238256845 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114776
sample_title: organoid data from sample  40238256845
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114777

Excluded

organoid data from sample 40241871131

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40241871131 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40241871131 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114777
sample_title: organoid data from sample  40241871131
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114778

Excluded

organoid data from sample 40256130640

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40256130640 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40256130640 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114778
sample_title: organoid data from sample  40256130640
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114779

Excluded

organoid data from sample 40285199382

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40285199382 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40285199382 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114779
sample_title: organoid data from sample  40285199382
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114780

Excluded

organoid data from sample 40292643748

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40292643748 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40292643748 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114780
sample_title: organoid data from sample  40292643748
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114781

Excluded

organoid data from sample 40310528543

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40310528543 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40310528543 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114781
sample_title: organoid data from sample  40310528543
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114782

Excluded

organoid data from sample 40323143838

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40323143838 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40323143838 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114782
sample_title: organoid data from sample  40323143838
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114783

Excluded

organoid data from sample 40349687284

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40349687284 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40349687284 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114783
sample_title: organoid data from sample  40349687284
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114784

Excluded

organoid data from sample 40369756936

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40369756936 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40369756936 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114784
sample_title: organoid data from sample  40369756936
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114785

Excluded

organoid data from sample 40374915445

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40374915445 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40374915445 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114785
sample_title: organoid data from sample  40374915445
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114786

Excluded

organoid data from sample 40393074187

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40393074187 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40393074187 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114786
sample_title: organoid data from sample  40393074187
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114787

Excluded

organoid data from sample 40404416536

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40404416536 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40404416536 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114787
sample_title: organoid data from sample  40404416536
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114788

Excluded

organoid data from sample 40411969992

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40411969992 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40411969992 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114788
sample_title: organoid data from sample  40411969992
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114789

Excluded

organoid data from sample 40438303348

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40438303348 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40438303348 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114789
sample_title: organoid data from sample  40438303348
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114790

Excluded

organoid data from sample 40440928633

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40440928633 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40440928633 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114790
sample_title: organoid data from sample  40440928633
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114791

Excluded

organoid data from sample 40457462089

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40457462089 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40457462089 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114791
sample_title: organoid data from sample  40457462089
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114792

Excluded

organoid data from sample 40486531731

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40486531731 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40486531731 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114792
sample_title: organoid data from sample  40486531731
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114793

Excluded

organoid data from sample 40512291331

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40512291331 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: icCD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40512291331 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: icCD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: icCD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114793
sample_title: organoid data from sample  40512291331
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: icCD

GSM7114794

Excluded

organoid data from sample 40539744797

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40539744797 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40539744797 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114794
sample_title: organoid data from sample  40539744797
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114795

Excluded

organoid data from sample 40558803438

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40558803438 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40558803438 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114795
sample_title: organoid data from sample  40558803438
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114796

Excluded

organoid data from sample 40575357894

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40575357894 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40575357894 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114796
sample_title: organoid data from sample  40575357894
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU

GSM7114797

Excluded

organoid data from sample 40593132699

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40593132699 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40593132699 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114797
sample_title: organoid data from sample  40593132699
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114798

Excluded

organoid data from sample 40611017494

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40611017494 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40611017494 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114798
sample_title: organoid data from sample  40611017494
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114799

Excluded

organoid data from sample 40614622780

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40614622780 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40614622780 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114799
sample_title: organoid data from sample  40614622780
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: IBDU

GSM7114800

Excluded

organoid data from sample 40630176136

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40630176136 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40630176136 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114800
sample_title: organoid data from sample  40630176136
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114801

Excluded

organoid data from sample 40657629592

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40657629592 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40657629592 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114801
sample_title: organoid data from sample  40657629592
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114802

Excluded

organoid data from sample 40676788233

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40676788233 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40676788233 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114802
sample_title: organoid data from sample  40676788233
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114803

Excluded

organoid data from sample 40729892299

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40729892299 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40729892299 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114803
sample_title: organoid data from sample  40729892299
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114804

Excluded

organoid data from sample 40732507585

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40732507585 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40732507585 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114804
sample_title: organoid data from sample  40732507585
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114805

Excluded

organoid data from sample 40758951931

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40758951931 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40758951931 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114805
sample_title: organoid data from sample  40758951931
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114806

Excluded

organoid data from sample 40765404397

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40765404397 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40765404397 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114806
sample_title: organoid data from sample  40765404397
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114807

Excluded

organoid data from sample 40778010682

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40778010682 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40778010682 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114807
sample_title: organoid data from sample  40778010682
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114808

Excluded

organoid data from sample 40794563038

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40794563038 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40794563038 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114808
sample_title: organoid data from sample  40794563038
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114809

Excluded

organoid data from sample 40812448833

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40812448833 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40812448833 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114809
sample_title: organoid data from sample  40812448833
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU

GSM7114810

Excluded

organoid data from sample 40820223638

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40820223638 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40820223638 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114810
sample_title: organoid data from sample  40820223638
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114811

Excluded

organoid data from sample 40847777094

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40847777094 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40847777094 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114811
sample_title: organoid data from sample  40847777094
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114812

Excluded

organoid data from sample 40859382280

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40859382280 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40859382280 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114812
sample_title: organoid data from sample  40859382280
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114813

Excluded

organoid data from sample 40866836736

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40866836736 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40866836736 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114813
sample_title: organoid data from sample  40866836736
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114814

Excluded

organoid data from sample 40883389192

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40883389192 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40883389192 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114814
sample_title: organoid data from sample  40883389192
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114815

Excluded

organoid data from sample 40896995487

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40896995487 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40896995487 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114815
sample_title: organoid data from sample  40896995487
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: UC

GSM7114816

Excluded

organoid data from sample 40901164997

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40901164997 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40901164997 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114816
sample_title: organoid data from sample  40901164997
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114817

Excluded

organoid data from sample 40913770182

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40913770182 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40913770182 ileum tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114817
sample_title: organoid data from sample  40913770182
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: NPD; diagnosis: CTR

GSM7114818

Excluded

organoid data from sample 40948108343

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40948108343 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40948108343 ileum tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: ileum
Characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114818
sample_title: organoid data from sample  40948108343
source_name: ileum
characteristics: tissue: ileum; cell type: organoid; disease state: IBD; diagnosis: IBDU

GSM7114819

Excluded

organoid data from sample 40977267085

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40977267085 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40977267085 rectum tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114819
sample_title: organoid data from sample  40977267085
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: IBD; diagnosis: CD

GSM7114820

Excluded

organoid data from sample 40984611441

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40984611441 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- organoid data from sample 40984611441 rectum tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: rectum
Characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM7114820
sample_title: organoid data from sample  40984611441
source_name: rectum
characteristics: tissue: rectum; cell type: organoid; disease state: NPD; diagnosis: CTR