GSE22889

Nitric oxide pathway specific gene alterations in inflammatory bowel disease

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

40 case / 4 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 44 samples
Specimen: Tissue
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Gillberg LK, Varsanyi M, Hellström PM, Gillberg L
Contact name: Linda Gillberg
Submission date: 2010-07-12
Last update: 2012-03-22
Organization: Karolinska Institutet
Department: Medicine
Public date: 2011-07-31
Experiment types: Expression profiling by array
Platforms: GPL1172 SuperArray GEArray Q Series Human Nitric Oxide Gene Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA128151

Summary

Studying genes involved in the regulation of inflammation may help to clarify the pathogenesis of IBD. In search of the genes which products are known to be involved in NO signalling and altered in patients with IBD, our present aim was to determine the expression of such genes in CD and UC, respectively. To this end, microarray expression of genes known to be controlled by or which products are involved in NO signalling was studied in biopsies of colonic mucosa from patients and healthy controls.

Overall design

A cohort of inflamed colonic mucosa samples from 20 CD patients and 20 UC patients, as well as 6 control colonic mucosa samples, was used to acquire expression profiles. All of the inflamed samples were analysed individually, while the control samples were pooled and analysed in 4 replicates.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 44 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Publication context when PubMed identifiers are already known.	No match found

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Inflammatory bowel disease Disease context came from Normalization rules.
Likely case group Inflammatory bowel disease 40 samples
Likely control group Control 4 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Tissue. Comparison suitability: 0%.
Interpreted disease metadata: Inflammatory bowel disease.
Processed data is available for downstream review.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

180 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM565405 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565405 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565406 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565406 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565407 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565407 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565408 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565408 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565409 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565409 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565410 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565410 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565411 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565411 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565412 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565412 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565413 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565413 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565414 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565414 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565415 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565415 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565416 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565416 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565417 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565417 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565418 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565418 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565419 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565419 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565420 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565420 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565421 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565421 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565422 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565422 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565423 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565423 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565424 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565424 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565425 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565425 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565426 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565426 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565427 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565427 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565428 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565428 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565429 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565429 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565430 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565430 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565431 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565431 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565432 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565432 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565433 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565433 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565434 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565434 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565435 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565435 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565436 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565436 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565437 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565437 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565438 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565438 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565439 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565439 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565440 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565440 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565441 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565441 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565442 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565442 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565443 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565443 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565444 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565444 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565445 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565445 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565446 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565446 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565447 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565447 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM565448 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon mucosa GSM565448 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon mucosa tissue: colon mucosa sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE22889 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE22889 dataset_title: Nitric oxide pathway specific gene alterations in inflammatory bowel disease organism: Homo sapiens assay_type: microarray processed_d... keyword match keyword match: microarray

disease inflammatory bowel disease GSE22889 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel disease dataset_accession: GSE22889 dataset_title: Nitric oxide pathway specific gene alterations in inflammatory bowel disease organism: Homo sapiens assay_type: microarray processed_d... controlled vocabulary controlled vocabulary disease match: inflammatory bowel disease

disease inflammatory bowel disease GSM565405 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_control_rep1 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565406 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_control_rep2 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565407 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_control_rep3 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565408 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_control_rep4 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565409 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_2 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 30; duration of disease: 5 months controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565410 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_3 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 76; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565411 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_4 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 36; duration of disease: 16 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565412 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_6 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 5 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565413 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_9 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 57; duration of disease: 38 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565414 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_10 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 23 controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565415 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_11 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 21 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565416 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_15 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 32; duration of disease: 21 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565417 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_16 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 43; duration of disease: 3 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565418 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_17 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 41; duration of disease: 4 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565419 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_18 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 38; duration of disease: 16 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565420 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_19 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 8 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565421 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_1 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 9 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565422 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_12 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 14 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565423 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_14 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 58; duration of disease: 30 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565424 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_20 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 3 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565425 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_21 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 47; duration of disease: 23 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565426 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_22 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 35; duration of disease: 19 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565427 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_23 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 70; duration of disease: 31 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565428 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_CD_26 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 67; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565429 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_2 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 32; duration of disease: 2 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565430 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_3 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 30; duration of disease: 14 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565431 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_4 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 31; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565432 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_5 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 27; duration of disease: 15 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565433 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_6 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 83; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565434 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_7 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 38; duration of disease: 32 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565435 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_11 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 26; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565436 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_12 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 39; duration of disease: 28 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565437 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_13 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 49; duration of disease: 6 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565438 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_14 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 35; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565439 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_1 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 57; duration of disease: 36 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565440 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_10 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 64; duration of disease: 45 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565441 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_15 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 50; duration of disease: 12 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565442 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_16 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 46; duration of disease: 16 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565443 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_17 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 31; duration of disease: 6 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565444 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_18 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 24; duration of disease: 2 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565445 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_19 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 23; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565446 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_20 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 33; duration of disease: 21 years controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565447 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_8 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 17; duration of disease: 5 months controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM565448 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Colon_UC_9 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 50; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary disease match: ibd

organism Homo sapiens GSE22889 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE22889 dataset_title: Nitric oxide pathway specific gene alterations in inflammatory bowel disease organism: Homo sapiens assay_type: microarray processed_d... keyword match keyword match: homo sapiens

tissue colon GSE22889 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic dataset_accession: GSE22889 dataset_title: Nitric oxide pathway specific gene alterations in inflammatory bowel disease organism: Homo sapiens assay_type: microarray processed_d... controlled vocabulary controlled vocabulary tissue match: colonic

tissue colon GSM565405 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_control_rep1 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565406 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_control_rep2 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565407 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_control_rep3 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565408 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_control_rep4 colon mucosa, control tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565409 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_2 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 30; duration of disease: 5 months controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565410 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_3 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 76; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565411 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_4 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 36; duration of disease: 16 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565412 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_6 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 5 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565413 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_9 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 57; duration of disease: 38 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565414 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_10 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 23 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565415 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_11 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 21 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565416 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_15 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 32; duration of disease: 21 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565417 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_16 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 43; duration of disease: 3 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565418 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_17 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 41; duration of disease: 4 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565419 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_18 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 38; duration of disease: 16 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565420 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_19 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 8 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565421 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_1 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 9 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565422 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_12 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 14 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565423 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_14 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 58; duration of disease: 30 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565424 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_20 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 3 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565425 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_21 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 47; duration of disease: 23 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565426 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_22 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: female; age: 35; duration of disease: 19 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565427 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_23 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 70; duration of disease: 31 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565428 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_CD_26 colon mucosa, CD tissue: colon mucosa; ibd subtype: CD; sex: male; age: 67; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565429 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_2 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 32; duration of disease: 2 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565430 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_3 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 30; duration of disease: 14 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565431 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_4 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 31; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565432 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_5 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 27; duration of disease: 15 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565433 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_6 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 83; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565434 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_7 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 38; duration of disease: 32 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565435 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_11 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 26; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565436 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_12 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 39; duration of disease: 28 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565437 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_13 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 49; duration of disease: 6 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565438 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_14 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 35; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565439 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_1 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 57; duration of disease: 36 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565440 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_10 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 64; duration of disease: 45 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565441 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_15 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 50; duration of disease: 12 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565442 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_16 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 46; duration of disease: 16 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565443 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_17 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 31; duration of disease: 6 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565444 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_18 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 24; duration of disease: 2 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565445 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_19 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 23; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565446 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_20 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 33; duration of disease: 21 years controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565447 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_8 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: male; age: 17; duration of disease: 5 months controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM565448 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon_UC_9 colon mucosa, UC tissue: colon mucosa; ibd subtype: UC; sex: female; age: 50; duration of disease: diagnosed at inclusion controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

44 rows shown Show Hide

Study totals: Case 40 | Control 4 | Unassigned 0 | Excluded 0 | Ambiguous 0 44 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Inflammatory bowel disease	Case	GSM565409	Colon_CD_2	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 30; Duration of disease: 5 months	Case marker detected.
Inflammatory bowel disease	Case	GSM565410	Colon_CD_3	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 76; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565411	Colon_CD_4	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 36; Duration of disease: 16 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565412	Colon_CD_6	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 53; Duration of disease: 5 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565413	Colon_CD_9	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 57; Duration of disease: 38 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565414	Colon_CD_10	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 23	Case marker detected.
Inflammatory bowel disease	Case	GSM565415	Colon_CD_11	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 53; Duration of disease: 21 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565416	Colon_CD_15	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 32; Duration of disease: 21 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565417	Colon_CD_16	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 43; Duration of disease: 3 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565418	Colon_CD_17	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 41; Duration of disease: 4 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565419	Colon_CD_18	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 38; Duration of disease: 16 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565420	Colon_CD_19	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 52; Duration of disease: 8 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565421	Colon_CD_1	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 24; Duration of disease: 9 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565422	Colon_CD_12	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 24; Duration of disease: 14 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565423	Colon_CD_14	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 58; Duration of disease: 30 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565424	Colon_CD_20	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 52; Duration of disease: 3 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565425	Colon_CD_21	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 47; Duration of disease: 23 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565426	Colon_CD_22	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Female; Age: 35; Duration of disease: 19 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565427	Colon_CD_23	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 70; Duration of disease: 31 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565428	Colon_CD_26	Colon mucosa, CD Tissue: Colon mucosa; Ibd subtype: CD; Sex: Male; Age: 67; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565429	Colon_UC_2	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 32; Duration of disease: 2 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565430	Colon_UC_3	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 30; Duration of disease: 14 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565431	Colon_UC_4	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 31; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565432	Colon_UC_5	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 27; Duration of disease: 15 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565433	Colon_UC_6	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 83; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565434	Colon_UC_7	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 38; Duration of disease: 32 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565435	Colon_UC_11	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 26; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565436	Colon_UC_12	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 39; Duration of disease: 28 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565437	Colon_UC_13	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 49; Duration of disease: 6 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565438	Colon_UC_14	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 35; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565439	Colon_UC_1	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 57; Duration of disease: 36 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565440	Colon_UC_10	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 64; Duration of disease: 45 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565441	Colon_UC_15	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 50; Duration of disease: 12 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565442	Colon_UC_16	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 46; Duration of disease: 16 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565443	Colon_UC_17	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 31; Duration of disease: 6 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565444	Colon_UC_18	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 24; Duration of disease: 2 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565445	Colon_UC_19	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 23; Duration of disease: Diagnosed at inclusion	Case marker detected.
Inflammatory bowel disease	Case	GSM565446	Colon_UC_20	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 33; Duration of disease: 21 years	Case marker detected.
Inflammatory bowel disease	Case	GSM565447	Colon_UC_8	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Male; Age: 17; Duration of disease: 5 months	Case marker detected.
Inflammatory bowel disease	Case	GSM565448	Colon_UC_9	Colon mucosa, UC Tissue: Colon mucosa; Ibd subtype: UC; Sex: Female; Age: 50; Duration of disease: Diagnosed at inclusion	Case marker detected.
Control	Control	GSM565405	Colon_control_rep1	Colon mucosa, control Tissue: Colon mucosa; Ibd subtype: Control; Sex: 2 males, 4 females; Age: 20-77	Sample-local control marker detected.
Control	Control	GSM565406	Colon_control_rep2	Colon mucosa, control Tissue: Colon mucosa; Ibd subtype: Control; Sex: 2 males, 4 females; Age: 20-77	Sample-local control marker detected.
Control	Control	GSM565407	Colon_control_rep3	Colon mucosa, control Tissue: Colon mucosa; Ibd subtype: Control; Sex: 2 males, 4 females; Age: 20-77	Sample-local control marker detected.
Control	Control	GSM565408	Colon_control_rep4	Colon mucosa, control Tissue: Colon mucosa; Ibd subtype: Control; Sex: 2 males, 4 females; Age: 20-77	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.