These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
Colon_control_rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, control
- Characteristics
- tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565405
sample_title: Colon_control_rep1
source_name: colon mucosa, control
characteristics: tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
Colon_control_rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, control
- Characteristics
- tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565406
sample_title: Colon_control_rep2
source_name: colon mucosa, control
characteristics: tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
Colon_control_rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, control
- Characteristics
- tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565407
sample_title: Colon_control_rep3
source_name: colon mucosa, control
characteristics: tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
Colon_control_rep4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, control
- Characteristics
- tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565408
sample_title: Colon_control_rep4
source_name: colon mucosa, control
characteristics: tissue: colon mucosa; ibd subtype: control; sex: 2 males, 4 females; age: 20-77
Colon_CD_2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 30; duration of disease: 5 months
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565409
sample_title: Colon_CD_2
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 30; duration of disease: 5 months
Colon_CD_3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 76; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565410
sample_title: Colon_CD_3
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 76; duration of disease: diagnosed at inclusion
Colon_CD_4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 36; duration of disease: 16 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565411
sample_title: Colon_CD_4
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 36; duration of disease: 16 years
Colon_CD_6
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 5 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565412
sample_title: Colon_CD_6
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 5 years
Colon_CD_9
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 57; duration of disease: 38 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565413
sample_title: Colon_CD_9
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 57; duration of disease: 38 years
Colon_CD_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 23
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565414
sample_title: Colon_CD_10
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 23
Colon_CD_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 21 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565415
sample_title: Colon_CD_11
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 53; duration of disease: 21 years
Colon_CD_15
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 32; duration of disease: 21 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565416
sample_title: Colon_CD_15
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 32; duration of disease: 21 years
Colon_CD_16
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 43; duration of disease: 3 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565417
sample_title: Colon_CD_16
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 43; duration of disease: 3 years
Colon_CD_17
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 41; duration of disease: 4 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565418
sample_title: Colon_CD_17
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 41; duration of disease: 4 years
Colon_CD_18
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 38; duration of disease: 16 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565419
sample_title: Colon_CD_18
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 38; duration of disease: 16 years
Colon_CD_19
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 8 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565420
sample_title: Colon_CD_19
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 8 years
Colon_CD_1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 9 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565421
sample_title: Colon_CD_1
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 9 years
Colon_CD_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 14 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565422
sample_title: Colon_CD_12
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 24; duration of disease: 14 years
Colon_CD_14
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 58; duration of disease: 30 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565423
sample_title: Colon_CD_14
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 58; duration of disease: 30 years
Colon_CD_20
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 3 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565424
sample_title: Colon_CD_20
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 52; duration of disease: 3 years
Colon_CD_21
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 47; duration of disease: 23 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565425
sample_title: Colon_CD_21
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 47; duration of disease: 23 years
Colon_CD_22
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: female; age: 35; duration of disease: 19 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565426
sample_title: Colon_CD_22
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: female; age: 35; duration of disease: 19 years
Colon_CD_23
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 70; duration of disease: 31 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565427
sample_title: Colon_CD_23
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 70; duration of disease: 31 years
Colon_CD_26
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, CD
- Characteristics
- tissue: colon mucosa; ibd subtype: CD; sex: male; age: 67; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565428
sample_title: Colon_CD_26
source_name: colon mucosa, CD
characteristics: tissue: colon mucosa; ibd subtype: CD; sex: male; age: 67; duration of disease: diagnosed at inclusion
Colon_UC_2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 32; duration of disease: 2 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565429
sample_title: Colon_UC_2
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 32; duration of disease: 2 years
Colon_UC_3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 30; duration of disease: 14 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565430
sample_title: Colon_UC_3
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 30; duration of disease: 14 years
Colon_UC_4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 31; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565431
sample_title: Colon_UC_4
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 31; duration of disease: diagnosed at inclusion
Colon_UC_5
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 27; duration of disease: 15 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565432
sample_title: Colon_UC_5
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 27; duration of disease: 15 years
Colon_UC_6
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 83; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565433
sample_title: Colon_UC_6
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 83; duration of disease: diagnosed at inclusion
Colon_UC_7
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 38; duration of disease: 32 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565434
sample_title: Colon_UC_7
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 38; duration of disease: 32 years
Colon_UC_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 26; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565435
sample_title: Colon_UC_11
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 26; duration of disease: diagnosed at inclusion
Colon_UC_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 39; duration of disease: 28 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565436
sample_title: Colon_UC_12
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 39; duration of disease: 28 years
Colon_UC_13
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 49; duration of disease: 6 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565437
sample_title: Colon_UC_13
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 49; duration of disease: 6 years
Colon_UC_14
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 35; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565438
sample_title: Colon_UC_14
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 35; duration of disease: diagnosed at inclusion
Colon_UC_1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 57; duration of disease: 36 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565439
sample_title: Colon_UC_1
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 57; duration of disease: 36 years
Colon_UC_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 64; duration of disease: 45 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565440
sample_title: Colon_UC_10
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 64; duration of disease: 45 years
Colon_UC_15
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 50; duration of disease: 12 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565441
sample_title: Colon_UC_15
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 50; duration of disease: 12 years
Colon_UC_16
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 46; duration of disease: 16 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565442
sample_title: Colon_UC_16
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 46; duration of disease: 16 years
Colon_UC_17
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 31; duration of disease: 6 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565443
sample_title: Colon_UC_17
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 31; duration of disease: 6 years
Colon_UC_18
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 24; duration of disease: 2 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565444
sample_title: Colon_UC_18
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 24; duration of disease: 2 years
Colon_UC_19
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 23; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565445
sample_title: Colon_UC_19
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 23; duration of disease: diagnosed at inclusion
Colon_UC_20
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 33; duration of disease: 21 years
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565446
sample_title: Colon_UC_20
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 33; duration of disease: 21 years
Colon_UC_8
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: male; age: 17; duration of disease: 5 months
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565447
sample_title: Colon_UC_8
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: male; age: 17; duration of disease: 5 months
Colon_UC_9
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon mucosa, UC
- Characteristics
- tissue: colon mucosa; ibd subtype: UC; sex: female; age: 50; duration of disease: diagnosed at inclusion
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM565448
sample_title: Colon_UC_9
source_name: colon mucosa, UC
characteristics: tissue: colon mucosa; ibd subtype: UC; sex: female; age: 50; duration of disease: diagnosed at inclusion