Matching samples

GSE25277 · Gene expression patterns of biopsies from a colonoscopy taken in 2009 of an ulcerative colitis patient infected with Trichuris trichiura

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

12 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (12)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM621958

Uncertain

Terminal_Ileum_1_09

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Terminal_Ileum_1_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
        • Terminal_Ileum_1_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Terminal_Ileum_1_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
          • Terminal_Ileum_1_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
        Source metadata
        Source name
        Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
        Characteristics
        tissue: terminal ileum biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM621958
sample_title: Terminal_Ileum_1_09
source_name: Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: terminal ileum biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

        GSM621959

        Uncertain

        Terminal_Ileum_2_09

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • Terminal_Ileum_2_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
              • Terminal_Ileum_2_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • Terminal_Ileum_2_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
                • Terminal_Ileum_2_09 Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: terminal ileum biopsy; disease st...
              Source metadata
              Source name
              Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
              Characteristics
              tissue: terminal ileum biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM621959
sample_title: Terminal_Ileum_2_09
source_name: Amplified RNA from terminal ileum pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: terminal ileum biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

              GSM621960

              Uncertain

              Ascending_Colon_1_09

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • Ascending_Colon_1_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                    • Ascending_Colon_1_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • Ascending_Colon_1_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                      • Ascending_Colon_1_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                    Source metadata
                    Source name
                    Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                    Characteristics
                    tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM621960
sample_title: Ascending_Colon_1_09
source_name: Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                    GSM621961

                    Uncertain

                    Ascending_Colon_2_09

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • Ascending_Colon_2_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                          • Ascending_Colon_2_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • Ascending_Colon_2_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                            • Ascending_Colon_2_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                          Source metadata
                          Source name
                          Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                          Characteristics
                          tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM621961
sample_title: Ascending_Colon_2_09
source_name: Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                          GSM621962

                          Uncertain

                          Ascending_Colon_3_09

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • Ascending_Colon_3_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                • Ascending_Colon_3_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • Ascending_Colon_3_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                  • Ascending_Colon_3_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                Source metadata
                                Source name
                                Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                Characteristics
                                tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM621962
sample_title: Ascending_Colon_3_09
source_name: Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                GSM621963

                                Uncertain

                                Ascending_Colon_4_09

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • Ascending_Colon_4_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                      • Ascending_Colon_4_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • Ascending_Colon_4_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                        • Ascending_Colon_4_09 Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: ascending colon biopsy; disease...
                                      Source metadata
                                      Source name
                                      Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                      Characteristics
                                      tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM621963
sample_title: Ascending_Colon_4_09
source_name: Amplified RNA from ascending colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: ascending colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                      GSM621964

                                      Uncertain

                                      Transverse_Colon_1_09

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • Transverse_Colon_1_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                            • Transverse_Colon_1_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • Transverse_Colon_1_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                              • Transverse_Colon_1_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                            Source metadata
                                            Source name
                                            Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                            Characteristics
                                            tissue: transverse colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM621964
sample_title: Transverse_Colon_1_09
source_name: Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: transverse colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                            GSM621965

                                            Uncertain

                                            Transverse_Colon_2_09

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • Transverse_Colon_2_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                  • Transverse_Colon_2_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • Transverse_Colon_2_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                    • Transverse_Colon_2_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                  Source metadata
                                                  Source name
                                                  Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                                  Characteristics
                                                  tissue: transverse colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM621965
sample_title: Transverse_Colon_2_09
source_name: Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: transverse colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                                  GSM621966

                                                  Uncertain

                                                  Transverse_Colon_3_09

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • Transverse_Colon_3_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                        • Transverse_Colon_3_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • Transverse_Colon_3_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                          • Transverse_Colon_3_09 Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: transverse colon biopsy; dise...
                                                        Source metadata
                                                        Source name
                                                        Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                                        Characteristics
                                                        tissue: transverse colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM621966
sample_title: Transverse_Colon_3_09
source_name: Amplified RNA from transverse colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: transverse colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                                        GSM621967

                                                        Uncertain

                                                        Sigmoid_Colon_1_09

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • Sigmoid_Colon_1_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                              • Sigmoid_Colon_1_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • Sigmoid_Colon_1_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                • Sigmoid_Colon_1_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                              Source metadata
                                                              Source name
                                                              Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                                              Characteristics
                                                              tissue: sigmoid colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM621967
sample_title: Sigmoid_Colon_1_09
source_name: Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: sigmoid colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                                              GSM621968

                                                              Uncertain

                                                              Sigmoid_Colon_2_09

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • Sigmoid_Colon_2_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                    • Sigmoid_Colon_2_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • Sigmoid_Colon_2_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                      • Sigmoid_Colon_2_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                    Source metadata
                                                                    Source name
                                                                    Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                                                    Characteristics
                                                                    tissue: sigmoid colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM621968
sample_title: Sigmoid_Colon_2_09
source_name: Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: sigmoid colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                                                    GSM621969

                                                                    Uncertain

                                                                    Sigmoid_Colon_3_09

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • Sigmoid_Colon_3_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                          • Sigmoid_Colon_3_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • Sigmoid_Colon_3_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                            • Sigmoid_Colon_3_09 Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura tissue: sigmoid colon biopsy; disease state...
                                                                          Source metadata
                                                                          Source name
                                                                          Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
                                                                          Characteristics
                                                                          tissue: sigmoid colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM621969
sample_title: Sigmoid_Colon_3_09
source_name: Amplified RNA from sigmoid colon pinch biopsy from an ulcerative colitis patient infected with Trichuris trichiura
characteristics: tissue: sigmoid colon biopsy; disease state: ulcerative colitis patient infected with Trichuris trichiura

                                                                          Excluded samples (0)

                                                                          No excluded samples.