Matching samples

GSE26305 · Genome-wide gene expression analysis for target genes to differentiate patients with intestinal tuberculosis and Crohn’s disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

4 case / 2 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (6)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM645979

Uncertain

Biopsy_Control_015

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Biopsy_Control_015 Colonic biopsies, control age: 23 years; gender: male; sample type: control; tissue: colonic biopsy
        • Biopsy_Control_015 Colonic biopsies, control age: 23 years; gender: male; sample type: control; tissue: colonic biopsy
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Biopsy_Control_015 Colonic biopsies, control age: 23 years; gender: male; sample type: control; tissue: colonic biopsy
          • Biopsy_Control_015 Colonic biopsies, control age: 23 years; gender: male; sample type: control; tissue: colonic biopsy
        Source metadata
        Source name
        Colonic biopsies, control
        Characteristics
        age: 23 years; gender: male; sample type: control; tissue: colonic biopsy
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM645979
sample_title: Biopsy_Control_015
source_name: Colonic biopsies, control
characteristics: age: 23 years; gender: male; sample type: control; tissue: colonic biopsy

        GSM646008

        Uncertain

        Biopsy_Control_030

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • Biopsy_Control_030 Colonic biopsies, control age: 65 years; gender: female; sample type: control; tissue: colonic biopsy
              • Biopsy_Control_030 Colonic biopsies, control age: 65 years; gender: female; sample type: control; tissue: colonic biopsy
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • Biopsy_Control_030 Colonic biopsies, control age: 65 years; gender: female; sample type: control; tissue: colonic biopsy
                • Biopsy_Control_030 Colonic biopsies, control age: 65 years; gender: female; sample type: control; tissue: colonic biopsy
              Source metadata
              Source name
              Colonic biopsies, control
              Characteristics
              age: 65 years; gender: female; sample type: control; tissue: colonic biopsy
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM646008
sample_title: Biopsy_Control_030
source_name: Colonic biopsies, control
characteristics: age: 65 years; gender: female; sample type: control; tissue: colonic biopsy

              GSM646009

              Uncertain

              Biopsy_CD_017

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • Biopsy_CD_017 Colonic biopsies, Crohn's disease age: 29 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                    • Biopsy_CD_017 Colonic biopsies, Crohn's disease age: 29 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • Biopsy_CD_017 Colonic biopsies, Crohn's disease age: 29 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                      • Biopsy_CD_017 Colonic biopsies, Crohn's disease age: 29 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                    Source metadata
                    Source name
                    Colonic biopsies, Crohn's disease
                    Characteristics
                    age: 29 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM646009
sample_title: Biopsy_CD_017
source_name: Colonic biopsies, Crohn's disease
characteristics: age: 29 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy

                    GSM646010

                    Uncertain

                    Biopsy_CD_024

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • Biopsy_CD_024 Colonic biopsies, Crohn's disease age: 40 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                          • Biopsy_CD_024 Colonic biopsies, Crohn's disease age: 40 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • Biopsy_CD_024 Colonic biopsies, Crohn's disease age: 40 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                            • Biopsy_CD_024 Colonic biopsies, Crohn's disease age: 40 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                          Source metadata
                          Source name
                          Colonic biopsies, Crohn's disease
                          Characteristics
                          age: 40 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM646010
sample_title: Biopsy_CD_024
source_name: Colonic biopsies, Crohn's disease
characteristics: age: 40 years; gender: male; disease state: Crohn's disease; tissue: colonic biopsy

                          GSM646011

                          Uncertain

                          Biopsy_ITB_012

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • Biopsy_ITB_012 Colonic biopsies, intestinal tuberculosis disease age: 26 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                • Biopsy_ITB_012 Colonic biopsies, intestinal tuberculosis disease age: 26 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • Biopsy_ITB_012 Colonic biopsies, intestinal tuberculosis disease age: 26 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                  • Biopsy_ITB_012 Colonic biopsies, intestinal tuberculosis disease age: 26 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                Source metadata
                                Source name
                                Colonic biopsies, intestinal tuberculosis disease
                                Characteristics
                                age: 26 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM646011
sample_title: Biopsy_ITB_012
source_name: Colonic biopsies, intestinal tuberculosis disease
characteristics: age: 26 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy

                                GSM646012

                                Uncertain

                                Biopsy_ITB_026

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • Biopsy_ITB_026 Colonic biopsies, intestinal tuberculosis disease age: 40 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                      • Biopsy_ITB_026 Colonic biopsies, intestinal tuberculosis disease age: 40 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • Biopsy_ITB_026 Colonic biopsies, intestinal tuberculosis disease age: 40 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                        • Biopsy_ITB_026 Colonic biopsies, intestinal tuberculosis disease age: 40 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                      Source metadata
                                      Source name
                                      Colonic biopsies, intestinal tuberculosis disease
                                      Characteristics
                                      age: 40 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM646012
sample_title: Biopsy_ITB_026
source_name: Colonic biopsies, intestinal tuberculosis disease
characteristics: age: 40 years; gender: female; disease state: intestinal tuberculosis disease; tissue: colonic biopsy

                                      Excluded samples (0)

                                      No excluded samples.