These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535393
sample_title: Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC3, rep1
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535394
sample_title: Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC3, rep2
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon fibroblast, IBD, ulcerative colitis, strain, donor UC3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535395
sample_title: Colon fibroblast, IBD, ulcerative colitis, strain, donor UC3, rep2
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon fibroblast, IBD, ulcerative colitis, strain, donor UC3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535396
sample_title: Colon fibroblast, IBD, ulcerative colitis, strain, donor UC3, rep3
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535397
sample_title: Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC3, rep3
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon fibroblast, IBD, ulcerative colitis, strain, donor UC3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535398
sample_title: Colon fibroblast, IBD, ulcerative colitis, strain, donor UC3, rep1
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon epithelium, IBD, ulcerative colitis, strain, donor UC1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535399
sample_title: Colon epithelium, IBD, ulcerative colitis, strain, donor UC1, rep1
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon fibroblast, IBD, ulcerative colitis, strain, donor UC1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535400
sample_title: Colon fibroblast, IBD, ulcerative colitis, strain, donor UC1, rep1
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon epithelium, IBD, ulcerative colitis, strain, donor UC1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535401
sample_title: Colon epithelium, IBD, ulcerative colitis, strain, donor UC1, rep2
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon fibroblast, IBD, ulcerative colitis, strain, donor UC1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535402
sample_title: Colon fibroblast, IBD, ulcerative colitis, strain, donor UC1, rep2
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon epithelium, IBD, ulcerative colitis, no strain, donor UC1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535403
sample_title: Colon epithelium, IBD, ulcerative colitis, no strain, donor UC1, rep1
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535404
sample_title: Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC1, rep1
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon epithelium, IBD, ulcerative colitis, no strain, donor UC1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535405
sample_title: Colon epithelium, IBD, ulcerative colitis, no strain, donor UC1, rep2
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535406
sample_title: Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC1, rep2
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon epithelium, IBD, ulcerative colitis, no strain, donor UC1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535407
sample_title: Colon epithelium, IBD, ulcerative colitis, no strain, donor UC1, rep3
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535408
sample_title: Colon fibroblast, IBD, ulcerative colitis, no strain, donor UC1, rep3
source_name: colon
characteristics: donor: UC1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon epithelium, healthy, strain, donor H3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535409
sample_title: Colon epithelium, healthy, strain, donor H3, rep1
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535410
sample_title: Colon fibroblast, healthy, strain, donor H3, rep1
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535411
sample_title: Colon epithelium, healthy, strain, donor H3, rep2
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535412
sample_title: Colon fibroblast, healthy, strain, donor H3, rep2
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535413
sample_title: Colon epithelium, healthy, strain, donor H3, rep3
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535414
sample_title: Colon fibroblast, healthy, strain, donor H3, rep3
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, no strain, donor H3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535415
sample_title: Colon epithelium, healthy, no strain, donor H3, rep1
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535416
sample_title: Colon fibroblast, healthy, no strain, donor H3, rep1
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, healthy, no strain, donor H3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535417
sample_title: Colon epithelium, healthy, no strain, donor H3, rep2
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535418
sample_title: Colon fibroblast, healthy, no strain, donor H3, rep2
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, healthy, no strain, donor H3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535419
sample_title: Colon epithelium, healthy, no strain, donor H3, rep3
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535420
sample_title: Colon fibroblast, healthy, no strain, donor H3, rep3
source_name: colon
characteristics: donor: H3; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, IBD, ulcerative colitis, no strain, donor UC3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535421
sample_title: Colon epithelium, IBD, ulcerative colitis, no strain, donor UC3, rep2
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon epithelium, IBD, ulcerative colitis, no strain, donor UC3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535422
sample_title: Colon epithelium, IBD, ulcerative colitis, no strain, donor UC3, rep1
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon epithelium, IBD, ulcerative colitis, no strain, donor UC3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535423
sample_title: Colon epithelium, IBD, ulcerative colitis, no strain, donor UC3, rep3
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: no strain
Colon epithelium, IBD, ulcerative colitis, strain, donor UC3, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535424
sample_title: Colon epithelium, IBD, ulcerative colitis, strain, donor UC3, rep1
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon epithelium, IBD, ulcerative colitis, strain, donor UC3, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535425
sample_title: Colon epithelium, IBD, ulcerative colitis, strain, donor UC3, rep2
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon epithelium, IBD, ulcerative colitis, strain, donor UC3, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535426
sample_title: Colon epithelium, IBD, ulcerative colitis, strain, donor UC3, rep3
source_name: colon
characteristics: donor: UC3; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: ulcerative colitis; stimulus: strain
Colon epithelium, IBD, crohn's, no strain, donor C1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535427
sample_title: Colon epithelium, IBD, crohn's, no strain, donor C1, rep1
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
Colon fibroblast, IBD, crohn's, no strain, donor C1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535428
sample_title: Colon fibroblast, IBD, crohn's, no strain, donor C1, rep1
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
Colon epithelium, IBD, crohn's, no strain, donor C1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535429
sample_title: Colon epithelium, IBD, crohn's, no strain, donor C1, rep2
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
Colon fibroblast, IBD, crohn's, no strain, donor C1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535430
sample_title: Colon fibroblast, IBD, crohn's, no strain, donor C1, rep2
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
Colon epithelium, IBD, crohn's, no strain, donor C1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535431
sample_title: Colon epithelium, IBD, crohn's, no strain, donor C1, rep3
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
Colon fibroblast, IBD, crohn's, no strain, donor C1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535432
sample_title: Colon fibroblast, IBD, crohn's, no strain, donor C1, rep3
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: no strain
Colon epithelium, healthy, no strain, donor H1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535433
sample_title: Colon epithelium, healthy, no strain, donor H1, rep1
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535434
sample_title: Colon fibroblast, healthy, no strain, donor H1, rep1
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, healthy, no strain, donor H1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535435
sample_title: Colon epithelium, healthy, no strain, donor H1, rep2
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535436
sample_title: Colon fibroblast, healthy, no strain, donor H1, rep2
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, healthy, no strain, donor H2, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535437
sample_title: Colon epithelium, healthy, no strain, donor H2, rep1
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H2, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535438
sample_title: Colon fibroblast, healthy, no strain, donor H2, rep1
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, healthy, no strain, donor H2, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535439
sample_title: Colon epithelium, healthy, no strain, donor H2, rep2
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon fibroblast, healthy, no strain, donor H2, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535440
sample_title: Colon fibroblast, healthy, no strain, donor H2, rep2
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: no strain
Colon epithelium, IBD, crohn's, strain, donor C1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535441
sample_title: Colon epithelium, IBD, crohn's, strain, donor C1, rep1
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
Colon fibroblast, IBD, crohn's, strain, donor C1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535442
sample_title: Colon fibroblast, IBD, crohn's, strain, donor C1, rep1
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
Colon epithelium, IBD, crohn's, strain, donor C1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535443
sample_title: Colon epithelium, IBD, crohn's, strain, donor C1, rep2
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
Colon fibroblast, IBD, crohn's, strain, donor C1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535444
sample_title: Colon fibroblast, IBD, crohn's, strain, donor C1, rep2
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
Colon epithelium, IBD, crohn's, strain, donor C1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535445
sample_title: Colon epithelium, IBD, crohn's, strain, donor C1, rep3
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: epithelial; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
Colon fibroblast, IBD, crohn's, strain, donor C1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535446
sample_title: Colon fibroblast, IBD, crohn's, strain, donor C1, rep3
source_name: colon
characteristics: donor: C1; tissue: colon; cell type: fibroblast; phenotype: IBD; ibd subtype: crohn's; stimulus: strain
Colon epithelium, healthy, strain, donor H1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535447
sample_title: Colon epithelium, healthy, strain, donor H1, rep1
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H1, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535448
sample_title: Colon fibroblast, healthy, strain, donor H1, rep1
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535449
sample_title: Colon epithelium, healthy, strain, donor H1, rep2
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H1, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535450
sample_title: Colon fibroblast, healthy, strain, donor H1, rep2
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535451
sample_title: Colon epithelium, healthy, strain, donor H1, rep3
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H1, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535452
sample_title: Colon fibroblast, healthy, strain, donor H1, rep3
source_name: colon
characteristics: donor: H1; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H2, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535453
sample_title: Colon epithelium, healthy, strain, donor H2, rep1
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H2, rep1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535454
sample_title: Colon fibroblast, healthy, strain, donor H2, rep1
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H2, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535455
sample_title: Colon epithelium, healthy, strain, donor H2, rep2
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H2, rep2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535456
sample_title: Colon fibroblast, healthy, strain, donor H2, rep2
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon epithelium, healthy, strain, donor H2, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535457
sample_title: Colon epithelium, healthy, strain, donor H2, rep3
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: epithelial; phenotype: healthy; ibd subtype: N/A; stimulus: strain
Colon fibroblast, healthy, strain, donor H2, rep3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- colon
- Characteristics
- donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM8535458
sample_title: Colon fibroblast, healthy, strain, donor H2, rep3
source_name: colon
characteristics: donor: H2; tissue: colon; cell type: fibroblast; phenotype: healthy; ibd subtype: N/A; stimulus: strain