GSE28750

Development and Validation of a Novel Molecular Biomarker Diagnostic Test for the Early Detection of Sepsis

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 41 samples
Specimen: Biofluid
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Sutherland A, Thomas M, Brandon RA, Brandon RB, Lipman J, Tang B, McLean A, Pascoe R, Price G, Nguyen T, Stone G, Venter D
Contact name: Gareth Price
Submission date: 2011-04-20
Last update: 2020-11-30
Organization: Queensland Facility for Advanced Bioinformatics
Department: Not available
Public date: 2011-11-01
Experiment types: Expression profiling by array
Platforms: GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA138719

Summary

Introduction: Sepsis is a complex immunological response to infection characterized by early hyperinflammation followed by severe and protracted immunosuppression, suggesting that a multi-marker approach has the greatest clinical utility for early detection, within a clinical environment focused on SIRS differentiation. Pre-clinical research using an equine sepsis model identified a panel of gene expression biomarkers that define the early aberrant immune activation. Thus, the primary objective was to apply these gene expression biomarkers to distinguish patients with sepsis from those who had undergone major open surgery and had clinical outcomes consistent with systemic inflammation due to physical trauma and wound healing. Methods: This was a multi-centre, prospective clinical trial conducted across 4 tertiary critical care settings in Australia. Sepsis patients were recruited if they met the 1992 Consensus Statement criteria and had clinical evidence of systemic infection based on microbiology diagnoses (n=27). Participants in the post-surgical (PS) group were recruited pre-operatively and blood samples collected within 24 hours following surgery (n=38). Healthy controls (HC) included hospital staff with no known concurrent illnesses (n=20). Each participant had minimally 5ml of PAXgene blood collected for leucocyte RNA isolation and gene expression analyses. Affymetrix array and multiplex tandem (MT)-PCR studies were conducted to evaluate transcriptional profiles in circulating white blood cells applying a set of 42 molecular markers that had been identified a priori. A LogitBoost algorithm was used to create a machine learning diagnostic rule to predict sepsis outcomes. Results: Based on preliminary microarray analyses comparing HC and sepsis groups. A panel of 42-gene expression markers were identified that represented key innate and adaptive immune function, cell cycling, WBC differentiation, extracellular remodelling and immune modulation pathways. Comparisons against GEO data confirmed the definitive separation of the sepsis cohort. Quantitative PCR results suggest the capacity for this test to differentiate severe systemic inflammation from HC is 92%. AUC ROC curve findings demonstrated sepsis prediction within a mixed inflammatory population, was between 86 - 92%. Conclusions: This novel molecular biomarker test has a clinically relevant sensitivity and specificity profile, and has the capacity for early detection of sepsis via the monitoring of critical care patients. GEO Note: Data made available represents the preliminary microarray investigation performed on Human U133 Plus 2.0 GeneChips (Affymetrix), assaying 41 patient samples (Sepsis n=10, Post-Surgical n=11, Control n=20).

Overall design

This was a multi-centre, prospective clinical trial conducted across 4 tertiary critical care settings in Australia. Sepsis patients were recruited if they met the 1992 Consensus Statement criteria and had clinical evidence of systemic infection based on microbiology diagnoses (n=27). Participants in the post-surgical (PS) group were recruited pre-operatively and blood samples collected within 24 hours following surgery (n=38). Healthy controls (HC) included hospital staff with no known concurrent illnesses (n=20). Each participant had minimally 5ml of PAXgene blood collected for leucocyte RNA isolation and gene expression analyses. The GEO data represents the preliminary microarray investigation performed on Human U133 Plus 2.0 GeneChips (Affymetrix), assaying 41 patient samples (Sepsis n=10, Post-Surgical n=11, Control n=20).

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 41 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 21 linked publications 21 DOIs Primary publication Development and validation of a novel molecular biomarker diagnostic test for the early detection of sepsis. Critical care (London, England), 2011 PubMed DOI Related publications Identification and mechanistic analysis of shared biomarkers and pathogenesis in acute pancreatitis and sepsis based on differential gene expression and protein interaction networks. Functional & integrative genomics, 2025 PubMed DOI Integrative analysis identifies lactylation-related biomarkers in sepsis via bioinformatics and machine learning. Biochemical and biophysical research communications, 2026 PubMed DOI Unveiling the therapeutic potential of Resveratrol against neutrophil-mediated hyperinflammation in sepsis: An in-silico, molecular docking, and ex-vivo approach. Biochemical and biophysical research communications, 2026 PubMed DOI Integrated multiomics and Mendelian randomization identify CHIT1 as a novel sepsis biomarker and therapeutic target. Scientific reports, 2025 PubMed DOI Identification of Molecular Subtypes and Prognostic Characteristics in Sepsis Based on T-Helper 17 Cell Differentiation-Related Genes. Shock (Augusta, Ga.), 2026 PubMed DOI Identification and Experimental Validation of Biomarkers Associated With Mitochondria and Macrophage Polarization in Sepsis. Emergency medicine international, 2025 PubMed DOI Immunomodulatory Roles and Clinical Significance of GZMM and DDX24 in Sepsis: A Multiomics Integrative Analysis With Experimental Validation. Human mutation, 2026 PubMed DOI Identification and validation of the important role of tryptophan-related gene CYP1B1 in the development and progression of sepsis. PloS one, 2025 PubMed DOI Bioinformatics analysis of pyroptosis-related differentially expressed genes in sepsis and diabetes mellitus. PloS one, 2026 PubMed DOI Combined Transcriptomic and Mendelian Randomisation Explores the Diagnostic Value of Ubiquitination-Related Genes in Sepsis. Journal of inflammation research, 2025 PubMed DOI Multi-Omics Analysis Identifies Immune Regulatory Networks in Sepsis-Associated Liver Injury: Experimental Validation and Clinical Relevance. Journal of inflammation research, 2025 PubMed DOI Development and validation of a machine-learning-based model for identification of genes associated with sepsis-associated acute kidney injury. Frontiers in genetics, 2025 PubMed DOI IL7R, GZMA and CD8A serve as potential molecular biomarkers for sepsis based on bioinformatics analysis. Frontiers in immunology, 2024 PubMed DOI Comprehensive integration of diagnostic biomarker analysis and immune cell infiltration features in sepsis via machine learning and bioinformatics techniques. Frontiers in immunology, 2025 PubMed DOI Identification of sepsis biomarkers through glutamine metabolism-mediated immune regulation: a comprehensive analysis employing mendelian randomization, multi-omics integration, and machine learning. Frontiers in immunology, 2025 PubMed DOI Identification of FTO as a key m6A demethylase linking immune dysregulation to sepsis pathogenesis. Frontiers in immunology, 2026 PubMed DOI Machine learning-based transcriptmics analysis reveals BMX, GRB10, and GADD45A as crucial biomarkers and therapeutic targets in sepsis. Frontiers in pharmacology, 2025 PubMed DOI [Exploration of key ferroptosis-related genes as therapeutic targets for sepsis based on bioinformatics and the depiction of their immune profiles characterization]. Zhonghua wei zhong bing ji jiu yi xue, 2024 PubMed DOI Bioinformatics analysis identifies IL-23A and JAK2 as regulatory factors in sepsis immune response via the JAK/STAT3 pathway. Journal of infection in developing countries, 2026 PubMed DOI Identification of hub genes and prediction of the ceRNA network in adult sepsis. PeerJ, 2025 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

11 samples are still unassigned.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 11 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Sepsis, systemic inflammatory response syndrome Disease context came from Normalization rules.
Likely case group Sepsis or systemic inflammatory response 10 samples
Likely control group Control 20 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
Interpreted disease metadata: Infectious disease or host response, Sepsis, Systemic inflammatory response syndrome.
Processed data is available for downstream review.
External evidence: PubMed links 21 publications; 21 DOIs available: PMID 21682927, PMID 39586719, PMID 39654893, PMID 40129981, PMID 40201575.
Publication context: Development and validation of a novel molecular biomarker diagnostic test for the early detection of sepsis.. Critical care (London, England), 2011. PMID 21682927. DOI 10.1186/cc10274.
Publication context: [Exploration of key ferroptosis-related genes as therapeutic targets for sepsis based on bioinformatics and the depiction of their immune profiles characterization].. Zhonghua wei zhong bing ji jiu yi xue, 2024. PMID 39586719. DOI 10.3760/cma.j.cn121430-20240524-00457.
Publication context: IL7R, GZMA and CD8A serve as potential molecular biomarkers for sepsis based on bioinformatics analysis.. Frontiers in immunology, 2024. PMID 39654893. DOI 10.3389/fimmu.2024.1445858.
Publication context: 18 additional linked PubMed publications are available.

Cautions

Downgraded for tissue search because it is a biofluid cohort.
Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

138 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source blood GSM712478 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712479 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712480 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712481 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712482 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712483 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712484 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712485 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712486 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712487 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712488 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712489 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712490 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712491 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712492 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712493 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712494 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712495 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712496 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712497 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712498 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712499 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712500 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712501 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712502 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712503 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712504 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712505 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712506 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712507 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712508 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712509 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712510 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712511 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712512 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712513 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712514 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712515 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712516 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712517 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM712518 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood tissue: whole blood sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE28750 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE28750 dataset_title: Development and Validation of a Novel Molecular Biomarker Diagnostic Test for the Early Detection of Sepsis organism: Homo sapiens ass... keyword match keyword match: microarray

disease sepsis GSE28750 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis dataset_accession: GSE28750 dataset_title: Development and Validation of a Novel Molecular Biomarker Diagnostic Test for the Early Detection of Sepsis organism: Homo sapiens ass... controlled vocabulary controlled vocabulary disease match: sepsis

disease systemic inflammatory response syndrome GSE28750 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence sirs dataset_accession: GSE28750 dataset_title: Development and Validation of a Novel Molecular Biomarker Diagnostic Test for the Early Detection of Sepsis organism: Homo sapiens ass... controlled vocabulary controlled vocabulary disease match: sirs

disease sepsis GSM712478 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_1 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712479 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_2 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712480 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_3 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712481 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_4 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712482 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_5 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712483 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_6 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712484 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_7 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712485 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_8 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712486 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_9 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM712487 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis Experiment_Sepsis_10 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cu... controlled vocabulary controlled vocabulary disease match: sepsis

organism Homo sapiens GSE28750 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE28750 dataset_title: Development and Validation of a Novel Molecular Biomarker Diagnostic Test for the Early Detection of Sepsis organism: Homo sapiens ass... keyword match keyword match: homo sapiens

specimen_material whole blood GSM712478 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_1 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712479 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_2 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712480 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_3 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712481 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_4 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712482 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_5 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712483 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_6 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712484 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_7 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712485 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_8 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712486 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_9 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712487 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Sepsis_10 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cu... controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712488 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_1 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712489 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_2 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712490 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_3 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712491 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_4 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712492 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_5 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712493 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_6 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712494 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_7 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712495 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_8 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712496 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_9 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712497 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_10 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712498 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_11 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712499 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_12 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712500 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_13 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712501 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_14 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712502 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_15 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712503 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_16 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712504 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_17 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712505 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_18 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712506 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_19 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712507 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Control_Healthy_20 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712508 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_1 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712509 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_2 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712510 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_3 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712511 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_4 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712512 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_5 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712513 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_6 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712514 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_7 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712515 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_8 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712516 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_9 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712517 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_10 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM712518 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood Experiment_Post_Surgical_11 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary specimen material match: whole blood

tissue blood GSE28750 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood dataset_accession: GSE28750 dataset_title: Development and Validation of a Novel Molecular Biomarker Diagnostic Test for the Early Detection of Sepsis organism: Homo sapiens ass... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_1 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_2 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_3 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_4 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_5 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_6 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_7 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_8 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_9 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cul... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Sepsis_10 Whole blood tissue: whole blood; health status: SEPSIS Enrolled within 24 hours of admission, Met ACCP/SCCM Consensus Statement, Positive Microbiological Cu... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_1 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_2 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_3 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_4 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_5 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_6 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_7 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_8 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_9 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_10 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_11 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712499 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_12 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712500 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_13 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712501 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_14 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712502 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_15 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712503 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_16 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712504 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_17 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712505 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_18 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712506 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_19 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712507 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Control_Healthy_20 Whole blood tissue: whole blood; health status: HEALTHY No concurrent illnesses, No past history of immunological dysfunction controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712508 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_1 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712509 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_2 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712510 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_3 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712511 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_4 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712512 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_5 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712513 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_6 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712514 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_7 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712515 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_8 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712516 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_9 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712517 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_10 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM712518 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Experiment_Post_Surgical_11 Whole blood tissue: whole blood; health status: POST_SURGICAL Collected within 24 hours post surgery, major open chest surgery controlled vocabulary controlled vocabulary tissue match: blood

Sample Group Preview

41 rows shown Show Hide

Study totals: Case 10 | Control 20 | Unassigned 11 | Excluded 0 | Ambiguous 0 41 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Sepsis or systemic inflammatory response	Case	GSM712478	Experiment_Sepsis_1	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712479	Experiment_Sepsis_2	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712480	Experiment_Sepsis_3	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712481	Experiment_Sepsis_4	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712482	Experiment_Sepsis_5	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712483	Experiment_Sepsis_6	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712484	Experiment_Sepsis_7	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712485	Experiment_Sepsis_8	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712486	Experiment_Sepsis_9	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM712487	Experiment_Sepsis_10	Whole blood Tissue: Whole blood; Health status: SEPSIS	Explicit sample label case marker detected.
Control	Control	GSM712488	Control_Healthy_1	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712489	Control_Healthy_2	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712490	Control_Healthy_3	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712491	Control_Healthy_4	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712492	Control_Healthy_5	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712493	Control_Healthy_6	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712494	Control_Healthy_7	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712495	Control_Healthy_8	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712496	Control_Healthy_9	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712497	Control_Healthy_10	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712498	Control_Healthy_11	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712499	Control_Healthy_12	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712500	Control_Healthy_13	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712501	Control_Healthy_14	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712502	Control_Healthy_15	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712503	Control_Healthy_16	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712504	Control_Healthy_17	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712505	Control_Healthy_18	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712506	Control_Healthy_19	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Control	Control	GSM712507	Control_Healthy_20	Whole blood Tissue: Whole blood; Health status: HEALTHY	Sample-local control marker detected.
Unassigned	Unassigned	GSM712508	Experiment_Post_Surgical_1	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712509	Experiment_Post_Surgical_2	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712510	Experiment_Post_Surgical_3	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712511	Experiment_Post_Surgical_4	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712512	Experiment_Post_Surgical_5	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712513	Experiment_Post_Surgical_6	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712514	Experiment_Post_Surgical_7	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712515	Experiment_Post_Surgical_8	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712516	Experiment_Post_Surgical_9	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712517	Experiment_Post_Surgical_10	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.
Unassigned	Unassigned	GSM712518	Experiment_Post_Surgical_11	Whole blood Tissue: Whole blood; Health status: POST_SURGICAL	No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

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Sample Group Preview

Use as Discovery Cohort