GSE294225

Transcriptional profiles are dramatically altered in circulating CD14+ monocytes in Rheumatoid Arthritis [RNA-seq]

Whole-study status Exploratory only

Dataset can inform exploration but is not strong enough for primary analysis.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

9 case / 15 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 24 samples
Specimen: Biofluid
Reported/interpreted study design: Patient biofluid vs healthy control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Woolcock K, Servaas N, van der Kroef M, Cole JJ, Pandit A, Goodyear CS
Contact name: Kieran Woolcock
Submission date: 2025-04-10
Last update: 2026-03-30
Organization: University of Glasgow
Department: School of Infection & Immunity
Public date: 2025-04-10
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA1248767

Summary

Peripheral blood samples were collected from healthy controls and rheumatoid arthritis patients (active disease: DAS28 > 2.7), subsequently CD14+ monocytes were isolated using a positive selection kit, RNA was extracted and RNA-Seq was completed.

Overall design

RNA-Seq using the illumina NovaSeq6000 was performed on circulating CD14+ monocytes isolated from 15 healthy controls and 9 rheumatoid arthritis patients.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 24 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication Investigating endogenous immune-mediated monocyte memory in rheumatoid arthritis. Annals of the rheumatic diseases, 2025 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

By Siftome standards, no expert review was triggered.

Why This Is Ranked Here

Tumor vs normal

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Rheumatoid arthritis Disease context came from Normalization rules.
Likely case group Rheumatoid arthritis 9 samples
Likely control group Healthy control 15 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Patient biofluid vs healthy control. Specimen: Biofluid. Comparison suitability: 20%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Rheumatoid arthritis.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 40350372.
Publication context: Investigating endogenous immune-mediated monocyte memory in rheumatoid arthritis.. Annals of the rheumatic diseases, 2025. PMID 40350372. DOI 10.1016/j.ard.2025.03.016.

Cautions

Downgraded for tissue search because it is a biofluid cohort.
Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

No dataset warnings

Normalized Fields

130 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source blood GSM8900572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900575 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900576 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900577 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900578 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900579 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900580 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900581 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900582 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900583 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900584 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900585 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900586 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900587 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900588 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900589 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900590 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900591 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900592 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900593 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900594 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM8900595 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood tissue: Peripheral Blood sample-anatomical-source-v1 sample-local anatomical source

assay_type bulk RNA-seq GSE294225 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE294225 dataset_title: Transcriptional profiles are dramatically altered in circulating CD14+ monocytes in Rheumatoid Arthritis [RNA-seq] organism: Homo sap... keyword match keyword match: bulk rna-seq

cell_population monocytes GSM8900572 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900573 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900574 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900575 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900576 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900577 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900578 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900579 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900580 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900581 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep10 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900582 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep11 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900583 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep12 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900584 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep13 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900585 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep14 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900586 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Healthy Control, Rep15 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900587 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900588 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900589 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900590 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900591 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900592 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900593 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900594 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

cell_population monocytes GSM8900595 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence monocyte Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary cell population match: monocyte

control_type healthy control GSM8900572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900575 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900576 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900577 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900578 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900579 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900580 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900581 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep10 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900582 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep11 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900583 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep12 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900584 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep13 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900585 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep14 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM8900586 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep15 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary control type match: healthy control

disease rheumatoid arthritis GSE294225 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis dataset_accession: GSE294225 dataset_title: Transcriptional profiles are dramatically altered in circulating CD14+ monocytes in Rheumatoid Arthritis [RNA-seq] organism: Homo sap... controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900587 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900588 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900589 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900590 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900591 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900592 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900593 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900594 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM8900595 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

normal_tissue_type healthy donor tissue GSM8900572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900575 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900576 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900577 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900578 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900579 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900580 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900581 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep10 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900582 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep11 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900583 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep12 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900584 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep13 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900585 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep14 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM8900586 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep15 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary normal tissue type match: healthy control

organism Homo sapiens GSE294225 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE294225 dataset_title: Transcriptional profiles are dramatically altered in circulating CD14+ monocytes in Rheumatoid Arthritis [RNA-seq] organism: Homo sap... keyword match keyword match: homo sapiens

sample_type normal tissue GSM8900572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900575 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900576 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900577 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900578 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900579 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900580 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900581 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep10 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900582 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep11 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900583 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep12 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900584 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep13 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900585 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep14 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM8900586 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Peripheral blood CD14+ monocyte, Healthy Control, Rep15 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary sample type match: healthy control

tissue blood GSE294225 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood dataset_accession: GSE294225 dataset_title: Transcriptional profiles are dramatically altered in circulating CD14+ monocytes in Rheumatoid Arthritis [RNA-seq] organism: Homo sap... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900572 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900573 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900574 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900575 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900576 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900577 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900578 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900579 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900580 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900581 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep10 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900582 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep11 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900583 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep12 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900584 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep13 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900585 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep14 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900586 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Healthy Control, Rep15 Peripheral Blood tissue: Peripheral Blood; subject status: Healthy Control; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900587 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep1 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900588 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep2 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900589 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep3 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900590 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep4 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900591 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep5 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900592 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep6 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900593 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep7 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900594 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep8 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM8900595 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep9 Peripheral Blood tissue: Peripheral Blood; subject status: Rheumatoid Arthritis; cell type: Monocyte controlled vocabulary controlled vocabulary tissue match: blood

Sample Group Preview

24 rows shown Show Hide

Study totals: Case 9 | Control 15 | Unassigned 0 | Excluded 0 | Ambiguous 0 24 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Rheumatoid arthritis	Case	GSM8900587	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep1	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900588	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep2	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900589	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep3	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900590	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep4	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900591	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep5	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900592	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep6	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900593	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep7	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900594	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep8	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Rheumatoid arthritis	Case	GSM8900595	Peripheral blood CD14+ monocyte, Rheumatoid Arthritis, Rep9	Peripheral Blood Tissue: Peripheral Blood; Subject status: Rheumatoid Arthritis; Cell type: Monocyte	Case marker detected.
Healthy control	Control	GSM8900572	Peripheral blood CD14+ monocyte, Healthy Control, Rep1	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900573	Peripheral blood CD14+ monocyte, Healthy Control, Rep2	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900574	Peripheral blood CD14+ monocyte, Healthy Control, Rep3	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900575	Peripheral blood CD14+ monocyte, Healthy Control, Rep4	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900576	Peripheral blood CD14+ monocyte, Healthy Control, Rep5	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900577	Peripheral blood CD14+ monocyte, Healthy Control, Rep6	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900578	Peripheral blood CD14+ monocyte, Healthy Control, Rep7	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900579	Peripheral blood CD14+ monocyte, Healthy Control, Rep8	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900580	Peripheral blood CD14+ monocyte, Healthy Control, Rep9	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900581	Peripheral blood CD14+ monocyte, Healthy Control, Rep10	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900582	Peripheral blood CD14+ monocyte, Healthy Control, Rep11	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900583	Peripheral blood CD14+ monocyte, Healthy Control, Rep12	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900584	Peripheral blood CD14+ monocyte, Healthy Control, Rep13	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900585	Peripheral blood CD14+ monocyte, Healthy Control, Rep14	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.
Healthy control	Control	GSM8900586	Peripheral blood CD14+ monocyte, Healthy Control, Rep15	Peripheral Blood Tissue: Peripheral Blood; Subject status: Healthy Control; Cell type: Monocyte	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort