Matching samples

GSE296485 · The RNA-seq of Ulcerative colitis patients and health

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

6 case / 3 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (9)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM8971235

Uncertain

Active ulcerative colitis patient-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Active ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
        • Active ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Active ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
          • Active ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
        Source metadata
        Source name
        left-sided colonic mucosal biopsy specimens
        Characteristics
        tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM8971235
sample_title: Active ulcerative colitis patient-1
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: UC

        GSM8971236

        Uncertain

        Active ulcerative colitis patient-2

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • Active ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
              • Active ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • Active ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                • Active ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
              Source metadata
              Source name
              left-sided colonic mucosal biopsy specimens
              Characteristics
              tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM8971236
sample_title: Active ulcerative colitis patient-2
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: UC

              GSM8971237

              Uncertain

              Active ulcerative colitis patient-3

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • Active ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                    • Active ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • Active ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                      • Active ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                    Source metadata
                    Source name
                    left-sided colonic mucosal biopsy specimens
                    Characteristics
                    tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM8971237
sample_title: Active ulcerative colitis patient-3
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: UC

                    GSM8971238

                    Uncertain

                    Remission ulcerative colitis patient-1

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • Remission ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                          • Remission ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • Remission ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                            • Remission ulcerative colitis patient-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                          Source metadata
                          Source name
                          left-sided colonic mucosal biopsy specimens
                          Characteristics
                          tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM8971238
sample_title: Remission ulcerative colitis patient-1
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: UC

                          GSM8971239

                          Uncertain

                          Remission ulcerative colitis patient-2

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • Remission ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                • Remission ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • Remission ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                  • Remission ulcerative colitis patient-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                Source metadata
                                Source name
                                left-sided colonic mucosal biopsy specimens
                                Characteristics
                                tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM8971239
sample_title: Remission ulcerative colitis patient-2
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: UC

                                GSM8971240

                                Uncertain

                                Remission ulcerative colitis patient-3

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • Remission ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                      • Remission ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • Remission ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                        • Remission ulcerative colitis patient-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                      Source metadata
                                      Source name
                                      left-sided colonic mucosal biopsy specimens
                                      Characteristics
                                      tissue: left-sided colonic mucosal biopsy specimens; genotype: UC
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM8971240
sample_title: Remission ulcerative colitis patient-3
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: UC

                                      GSM8971241

                                      Uncertain

                                      Healthy control-1

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • Healthy control-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                            • Healthy control-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • Healthy control-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                              • Healthy control-1 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                            Source metadata
                                            Source name
                                            left-sided colonic mucosal biopsy specimens
                                            Characteristics
                                            tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM8971241
sample_title: Healthy control-1
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: HC

                                            GSM8971242

                                            Uncertain

                                            Healthy control-2

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • Healthy control-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                  • Healthy control-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • Healthy control-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                    • Healthy control-2 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                  Source metadata
                                                  Source name
                                                  left-sided colonic mucosal biopsy specimens
                                                  Characteristics
                                                  tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM8971242
sample_title: Healthy control-2
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: HC

                                                  GSM8971243

                                                  Uncertain

                                                  Healthy control-3

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • Healthy control-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                        • Healthy control-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • Healthy control-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                          • Healthy control-3 left-sided colonic mucosal biopsy specimens tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                        Source metadata
                                                        Source name
                                                        left-sided colonic mucosal biopsy specimens
                                                        Characteristics
                                                        tissue: left-sided colonic mucosal biopsy specimens; genotype: HC
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM8971243
sample_title: Healthy control-3
source_name: left-sided colonic mucosal biopsy specimens
characteristics: tissue: left-sided colonic mucosal biopsy specimens; genotype: HC

                                                        Excluded samples (0)

                                                        No excluded samples.