P3-CD4.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3-CD4.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; ce...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3-CD4.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; ce...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; cell line/clone: clone; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819181
sample_title: P3-CD4.1
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; cell line/clone: clone; tissue: duodenum; gender: M
P3-CD4.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3-CD4.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; ce...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3-CD4.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; ce...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; cell line/clone: clone; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819182
sample_title: P3-CD4.2
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control clone from RCDII patient 3; cell line/clone: clone; tissue: duodenum; gender: M
P1-CD4.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD4.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD4.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819183
sample_title: P1-CD4.1
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
P1-CD4.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD4.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD4.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819184
sample_title: P1-CD4.2
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3+CD4+ CD8-; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
P1-CD8.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD8.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD8.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819185
sample_title: P1-CD8.1
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
P1-CD8.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD8.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1-CD8.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cel...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819186
sample_title: P1-CD8.2
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3+CD4- CD8+; overall phenotype: T cell; patients: control line from RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
P1.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clon...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clon...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819187
sample_title: P1.1
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
P1.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clon...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P1.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clon...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819188
sample_title: P1.2
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 1; cell line/clone: line; tissue: duodenum; gender: F
P2.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P2.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clon...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P2.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clon...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819189
sample_title: P2.1
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clone: line; tissue: duodenum; gender: M
P2.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P2.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clon...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P2.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clon...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819190
sample_title: P2.2
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 2; cell line/clone: line; tissue: duodenum; gender: M
P3.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clon...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3.1 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clon...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819191
sample_title: P3.1
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clone: line; tissue: duodenum; gender: M
P3.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clon...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- P3.2 intestinal cells disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clon...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819192
sample_title: P3.2
source_name: intestinal cells
characteristics: disease status of patient: RCDII; surface marker expression: CD3-CD4-CD8-; overall phenotype: aberrant cell; patients: line RCDII patient 3; cell line/clone: line; tissue: duodenum; gender: M
IEL1.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL1.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL1.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819193
sample_title: IEL1.1
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
IEL1.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL1.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL1.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819194
sample_title: IEL1.2
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
IEL2.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL2.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL2.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819195
sample_title: IEL2.1
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
IEL2.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL2.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL2.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819196
sample_title: IEL2.2
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: M
IEL3.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL3.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL3.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819197
sample_title: IEL3.1
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
IEL3.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL3.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL3.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819198
sample_title: IEL3.2
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
IEL4.1
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL4.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL4.1 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819199
sample_title: IEL4.1
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
IEL4.2
Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL4.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL4.2 intestinal cells disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease...
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819200
sample_title: IEL4.2
source_name: intestinal cells
characteristics: disease status of patient: celiac disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from celiac disease patient; cell line/clone: line; tissue: duodenum; gender: F
IEL5.1
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL5.1 intestinal cells disease status of patient: crohn's disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from crohns diseas...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: crohn's disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from crohns disease patient; cell line/clone: line; tissue: colon; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819201
sample_title: IEL5.1
source_name: intestinal cells
characteristics: disease status of patient: crohn's disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from crohns disease patient; cell line/clone: line; tissue: colon; gender: F
IEL5.2
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- IEL5.2 intestinal cells disease status of patient: crohn's disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from crohns diseas...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal cells
- Characteristics
- disease status of patient: crohn's disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from crohns disease patient; cell line/clone: line; tissue: colon; gender: F
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM819202
sample_title: IEL5.2
source_name: intestinal cells
characteristics: disease status of patient: crohn's disease; surface marker expression: CD3+CD4+CD8+; overall phenotype: T cell; patients: control line from crohns disease patient; cell line/clone: line; tissue: colon; gender: F