Matching samples

GSE33258 · Gene expression profiling in HCV associated liver disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

36 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (36)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM822892

Uncertain

N1_Fibrosis stage 1_1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • N1_Fibrosis stage 1_1 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
        • N1_Fibrosis stage 1_1 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • N1_Fibrosis stage 1_1 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
          • N1_Fibrosis stage 1_1 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
        Source metadata
        Source name
        N1_Fibrosis stage 1
        Characteristics
        tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM822892
sample_title: N1_Fibrosis stage 1_1
source_name: N1_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

        GSM822893

        Uncertain

        N1_Fibrosis stage 1_2

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • N1_Fibrosis stage 1_2 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
              • N1_Fibrosis stage 1_2 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • N1_Fibrosis stage 1_2 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                • N1_Fibrosis stage 1_2 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
              Source metadata
              Source name
              N1_Fibrosis stage 1
              Characteristics
              tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM822893
sample_title: N1_Fibrosis stage 1_2
source_name: N1_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

              GSM822894

              Uncertain

              N1_Fibrosis stage 1_3

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • N1_Fibrosis stage 1_3 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                    • N1_Fibrosis stage 1_3 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • N1_Fibrosis stage 1_3 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                      • N1_Fibrosis stage 1_3 N1_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                    Source metadata
                    Source name
                    N1_Fibrosis stage 1
                    Characteristics
                    tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM822894
sample_title: N1_Fibrosis stage 1_3
source_name: N1_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                    GSM822895

                    Uncertain

                    N2_Fibrosis stage 1_1

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • N2_Fibrosis stage 1_1 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                          • N2_Fibrosis stage 1_1 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • N2_Fibrosis stage 1_1 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                            • N2_Fibrosis stage 1_1 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                          Source metadata
                          Source name
                          N2_Fibrosis stage 1
                          Characteristics
                          tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM822895
sample_title: N2_Fibrosis stage 1_1
source_name: N2_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                          GSM822896

                          Uncertain

                          N2_Fibrosis stage 1_2

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • N2_Fibrosis stage 1_2 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                • N2_Fibrosis stage 1_2 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • N2_Fibrosis stage 1_2 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                  • N2_Fibrosis stage 1_2 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                Source metadata
                                Source name
                                N2_Fibrosis stage 1
                                Characteristics
                                tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM822896
sample_title: N2_Fibrosis stage 1_2
source_name: N2_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                                GSM822897

                                Uncertain

                                N2_Fibrosis stage 1_3

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • N2_Fibrosis stage 1_3 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                      • N2_Fibrosis stage 1_3 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • N2_Fibrosis stage 1_3 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                        • N2_Fibrosis stage 1_3 N2_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                      Source metadata
                                      Source name
                                      N2_Fibrosis stage 1
                                      Characteristics
                                      tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM822897
sample_title: N2_Fibrosis stage 1_3
source_name: N2_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                                      GSM822898

                                      Uncertain

                                      N3_Fibrosis stage 1_1

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • N3_Fibrosis stage 1_1 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                            • N3_Fibrosis stage 1_1 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • N3_Fibrosis stage 1_1 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                              • N3_Fibrosis stage 1_1 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                            Source metadata
                                            Source name
                                            N3_Fibrosis stage 1
                                            Characteristics
                                            tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM822898
sample_title: N3_Fibrosis stage 1_1
source_name: N3_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                                            GSM822899

                                            Uncertain

                                            N3_Fibrosis stage 1_2

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • N3_Fibrosis stage 1_2 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                  • N3_Fibrosis stage 1_2 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • N3_Fibrosis stage 1_2 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                    • N3_Fibrosis stage 1_2 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                  Source metadata
                                                  Source name
                                                  N3_Fibrosis stage 1
                                                  Characteristics
                                                  tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM822899
sample_title: N3_Fibrosis stage 1_2
source_name: N3_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                                                  GSM822900

                                                  Uncertain

                                                  N3_Fibrosis stage 1_3

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • N3_Fibrosis stage 1_3 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                        • N3_Fibrosis stage 1_3 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • N3_Fibrosis stage 1_3 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                          • N3_Fibrosis stage 1_3 N3_Fibrosis stage 1 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                        Source metadata
                                                        Source name
                                                        N3_Fibrosis stage 1
                                                        Characteristics
                                                        tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM822900
sample_title: N3_Fibrosis stage 1_3
source_name: N3_Fibrosis stage 1
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F1

                                                        GSM822901

                                                        Uncertain

                                                        N1_Fibrosis stage 2_1

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • N1_Fibrosis stage 2_1 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                              • N1_Fibrosis stage 2_1 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • N1_Fibrosis stage 2_1 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                • N1_Fibrosis stage 2_1 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                              Source metadata
                                                              Source name
                                                              N1_Fibrosis stage 2
                                                              Characteristics
                                                              tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM822901
sample_title: N1_Fibrosis stage 2_1
source_name: N1_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                              GSM822902

                                                              Uncertain

                                                              N1_Fibrosis stage 2_2

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • N1_Fibrosis stage 2_2 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                    • N1_Fibrosis stage 2_2 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • N1_Fibrosis stage 2_2 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                      • N1_Fibrosis stage 2_2 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                    Source metadata
                                                                    Source name
                                                                    N1_Fibrosis stage 2
                                                                    Characteristics
                                                                    tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM822902
sample_title: N1_Fibrosis stage 2_2
source_name: N1_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                    GSM822903

                                                                    Uncertain

                                                                    N1_Fibrosis stage 2_3

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • N1_Fibrosis stage 2_3 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                          • N1_Fibrosis stage 2_3 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • N1_Fibrosis stage 2_3 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                            • N1_Fibrosis stage 2_3 N1_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                          Source metadata
                                                                          Source name
                                                                          N1_Fibrosis stage 2
                                                                          Characteristics
                                                                          tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM822903
sample_title: N1_Fibrosis stage 2_3
source_name: N1_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                          GSM822904

                                                                          Uncertain

                                                                          N2_Fibrosis stage 2_1

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • N2_Fibrosis stage 2_1 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                • N2_Fibrosis stage 2_1 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • N2_Fibrosis stage 2_1 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                  • N2_Fibrosis stage 2_1 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                Source metadata
                                                                                Source name
                                                                                N2_Fibrosis stage 2
                                                                                Characteristics
                                                                                tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM822904
sample_title: N2_Fibrosis stage 2_1
source_name: N2_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                                GSM822905

                                                                                Uncertain

                                                                                N2_Fibrosis stage 2_2

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • N2_Fibrosis stage 2_2 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                      • N2_Fibrosis stage 2_2 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • N2_Fibrosis stage 2_2 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                        • N2_Fibrosis stage 2_2 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                      Source metadata
                                                                                      Source name
                                                                                      N2_Fibrosis stage 2
                                                                                      Characteristics
                                                                                      tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM822905
sample_title: N2_Fibrosis stage 2_2
source_name: N2_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                                      GSM822906

                                                                                      Uncertain

                                                                                      N2_Fibrosis stage 2_3

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • N2_Fibrosis stage 2_3 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                            • N2_Fibrosis stage 2_3 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • N2_Fibrosis stage 2_3 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                              • N2_Fibrosis stage 2_3 N2_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                            Source metadata
                                                                                            Source name
                                                                                            N2_Fibrosis stage 2
                                                                                            Characteristics
                                                                                            tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM822906
sample_title: N2_Fibrosis stage 2_3
source_name: N2_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                                            GSM822907

                                                                                            Uncertain

                                                                                            N3_Fibrosis stage 2_1

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • N3_Fibrosis stage 2_1 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                  • N3_Fibrosis stage 2_1 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • N3_Fibrosis stage 2_1 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                    • N3_Fibrosis stage 2_1 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  N3_Fibrosis stage 2
                                                                                                  Characteristics
                                                                                                  tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM822907
sample_title: N3_Fibrosis stage 2_1
source_name: N3_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                                                  GSM822908

                                                                                                  Uncertain

                                                                                                  N3_Fibrosis stage 2_2

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • N3_Fibrosis stage 2_2 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                        • N3_Fibrosis stage 2_2 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • N3_Fibrosis stage 2_2 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                          • N3_Fibrosis stage 2_2 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        N3_Fibrosis stage 2
                                                                                                        Characteristics
                                                                                                        tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM822908
sample_title: N3_Fibrosis stage 2_2
source_name: N3_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                                                        GSM822909

                                                                                                        Uncertain

                                                                                                        N3_Fibrosis stage 2_3

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • N3_Fibrosis stage 2_3 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                              • N3_Fibrosis stage 2_3 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • N3_Fibrosis stage 2_3 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                                • N3_Fibrosis stage 2_3 N3_Fibrosis stage 2 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              N3_Fibrosis stage 2
                                                                                                              Characteristics
                                                                                                              tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM822909
sample_title: N3_Fibrosis stage 2_3
source_name: N3_Fibrosis stage 2
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F2

                                                                                                              GSM822910

                                                                                                              Uncertain

                                                                                                              N1_Fibrosis stage 3_1

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • N1_Fibrosis stage 3_1 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                    • N1_Fibrosis stage 3_1 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • N1_Fibrosis stage 3_1 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                      • N1_Fibrosis stage 3_1 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    N1_Fibrosis stage 3
                                                                                                                    Characteristics
                                                                                                                    tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM822910
sample_title: N1_Fibrosis stage 3_1
source_name: N1_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                    GSM822911

                                                                                                                    Uncertain

                                                                                                                    N1_Fibrosis stage 3_2

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • N1_Fibrosis stage 3_2 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                          • N1_Fibrosis stage 3_2 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • N1_Fibrosis stage 3_2 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                            • N1_Fibrosis stage 3_2 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          N1_Fibrosis stage 3
                                                                                                                          Characteristics
                                                                                                                          tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM822911
sample_title: N1_Fibrosis stage 3_2
source_name: N1_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                          GSM822912

                                                                                                                          Uncertain

                                                                                                                          N1_Fibrosis stage 3_3

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • N1_Fibrosis stage 3_3 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                • N1_Fibrosis stage 3_3 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • N1_Fibrosis stage 3_3 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                  • N1_Fibrosis stage 3_3 N1_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                N1_Fibrosis stage 3
                                                                                                                                Characteristics
                                                                                                                                tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM822912
sample_title: N1_Fibrosis stage 3_3
source_name: N1_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                GSM822913

                                                                                                                                Uncertain

                                                                                                                                N2_Fibrosis stage 3_1

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • N2_Fibrosis stage 3_1 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                      • N2_Fibrosis stage 3_1 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • N2_Fibrosis stage 3_1 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                        • N2_Fibrosis stage 3_1 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      N2_Fibrosis stage 3
                                                                                                                                      Characteristics
                                                                                                                                      tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM822913
sample_title: N2_Fibrosis stage 3_1
source_name: N2_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                      GSM822914

                                                                                                                                      Uncertain

                                                                                                                                      N2_Fibrosis stage 3_2

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • N2_Fibrosis stage 3_2 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                            • N2_Fibrosis stage 3_2 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • N2_Fibrosis stage 3_2 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                              • N2_Fibrosis stage 3_2 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            N2_Fibrosis stage 3
                                                                                                                                            Characteristics
                                                                                                                                            tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM822914
sample_title: N2_Fibrosis stage 3_2
source_name: N2_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                            GSM822915

                                                                                                                                            Uncertain

                                                                                                                                            N2_Fibrosis stage 3_3

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • N2_Fibrosis stage 3_3 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                  • N2_Fibrosis stage 3_3 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • N2_Fibrosis stage 3_3 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                    • N2_Fibrosis stage 3_3 N2_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  N2_Fibrosis stage 3
                                                                                                                                                  Characteristics
                                                                                                                                                  tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM822915
sample_title: N2_Fibrosis stage 3_3
source_name: N2_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                                  GSM822916

                                                                                                                                                  Uncertain

                                                                                                                                                  N3_Fibrosis stage 3_1

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • N3_Fibrosis stage 3_1 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                        • N3_Fibrosis stage 3_1 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • N3_Fibrosis stage 3_1 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                          • N3_Fibrosis stage 3_1 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        N3_Fibrosis stage 3
                                                                                                                                                        Characteristics
                                                                                                                                                        tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM822916
sample_title: N3_Fibrosis stage 3_1
source_name: N3_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                                        GSM822917

                                                                                                                                                        Uncertain

                                                                                                                                                        N3_Fibrosis stage 3_2

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • N3_Fibrosis stage 3_2 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                              • N3_Fibrosis stage 3_2 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • N3_Fibrosis stage 3_2 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                                • N3_Fibrosis stage 3_2 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              N3_Fibrosis stage 3
                                                                                                                                                              Characteristics
                                                                                                                                                              tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM822917
sample_title: N3_Fibrosis stage 3_2
source_name: N3_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                                              GSM822918

                                                                                                                                                              Uncertain

                                                                                                                                                              N3_Fibrosis stage 3_3

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • N3_Fibrosis stage 3_3 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                                    • N3_Fibrosis stage 3_3 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • N3_Fibrosis stage 3_3 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                                      • N3_Fibrosis stage 3_3 N3_Fibrosis stage 3 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    N3_Fibrosis stage 3
                                                                                                                                                                    Characteristics
                                                                                                                                                                    tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM822918
sample_title: N3_Fibrosis stage 3_3
source_name: N3_Fibrosis stage 3
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F3

                                                                                                                                                                    GSM822919

                                                                                                                                                                    Uncertain

                                                                                                                                                                    N1_Fibrosis stage 4_1

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • N1_Fibrosis stage 4_1 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                          • N1_Fibrosis stage 4_1 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • N1_Fibrosis stage 4_1 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                            • N1_Fibrosis stage 4_1 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          N1_Fibrosis stage 4
                                                                                                                                                                          Characteristics
                                                                                                                                                                          tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM822919
sample_title: N1_Fibrosis stage 4_1
source_name: N1_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                          GSM822920

                                                                                                                                                                          Uncertain

                                                                                                                                                                          N1_Fibrosis stage 4_2

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • N1_Fibrosis stage 4_2 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                • N1_Fibrosis stage 4_2 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • N1_Fibrosis stage 4_2 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                  • N1_Fibrosis stage 4_2 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                N1_Fibrosis stage 4
                                                                                                                                                                                Characteristics
                                                                                                                                                                                tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM822920
sample_title: N1_Fibrosis stage 4_2
source_name: N1_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                GSM822921

                                                                                                                                                                                Uncertain

                                                                                                                                                                                N1_Fibrosis stage 4_3

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • N1_Fibrosis stage 4_3 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                      • N1_Fibrosis stage 4_3 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • N1_Fibrosis stage 4_3 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                        • N1_Fibrosis stage 4_3 N1_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      N1_Fibrosis stage 4
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM822921
sample_title: N1_Fibrosis stage 4_3
source_name: N1_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                      GSM822922

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      N2_Fibrosis stage 4_1

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • N2_Fibrosis stage 4_1 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                            • N2_Fibrosis stage 4_1 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • N2_Fibrosis stage 4_1 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                              • N2_Fibrosis stage 4_1 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            N2_Fibrosis stage 4
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM822922
sample_title: N2_Fibrosis stage 4_1
source_name: N2_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                            GSM822923

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            N2_Fibrosis stage 4_2

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • N2_Fibrosis stage 4_2 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                  • N2_Fibrosis stage 4_2 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • N2_Fibrosis stage 4_2 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                    • N2_Fibrosis stage 4_2 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  N2_Fibrosis stage 4
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM822923
sample_title: N2_Fibrosis stage 4_2
source_name: N2_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                                  GSM822924

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  N2_Fibrosis stage 4_3

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • N2_Fibrosis stage 4_3 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                        • N2_Fibrosis stage 4_3 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • N2_Fibrosis stage 4_3 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                          • N2_Fibrosis stage 4_3 N2_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        N2_Fibrosis stage 4
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM822924
sample_title: N2_Fibrosis stage 4_3
source_name: N2_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                                        GSM822925

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        N3_Fibrosis stage 4_1

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • N3_Fibrosis stage 4_1 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                              • N3_Fibrosis stage 4_1 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • N3_Fibrosis stage 4_1 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                • N3_Fibrosis stage 4_1 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              N3_Fibrosis stage 4
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM822925
sample_title: N3_Fibrosis stage 4_1
source_name: N3_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                                              GSM822926

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              N3_Fibrosis stage 4_2

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • N3_Fibrosis stage 4_2 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                    • N3_Fibrosis stage 4_2 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • N3_Fibrosis stage 4_2 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                      • N3_Fibrosis stage 4_2 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    N3_Fibrosis stage 4
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM822926
sample_title: N3_Fibrosis stage 4_2
source_name: N3_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                                                    GSM822927

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    N3_Fibrosis stage 4_3

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • N3_Fibrosis stage 4_3 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                          • N3_Fibrosis stage 4_3 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • N3_Fibrosis stage 4_3 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                            • N3_Fibrosis stage 4_3 N3_Fibrosis stage 4 tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          N3_Fibrosis stage 4
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM822927
sample_title: N3_Fibrosis stage 4_3
source_name: N3_Fibrosis stage 4
characteristics: tissue: HCV infected human liver biopsy samples; liver fibrosis stage: F4

                                                                                                                                                                                                                          Excluded samples (0)

                                                                                                                                                                                                                          No excluded samples.