Gene expression profiles of pediatric IBD remission patients

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

45 case / 13 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 58 samples
Specimen: Biofluid
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Swagemakers SM, van Lierop PP, van Lierop P
Contact name: Pieter van Lierop
Submission date: 2011-11-24
Last update: 2019-03-25
Organization: UMC Utrecht
Department: Pediatrics
Public date: 2013-10-04
Experiment types: Expression profiling by array
Platforms: GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA150557

Summary

Clinical remission is apparent when laboratory markers of inflammation are normal and clinical symptoms are absent. However, sub-clinical inflammation can still be present. A detailed analysis of the immune status during this inactive state of disease may provide a useful tool to subcategorize patients with subclinical immune activation We performed (un)supervised clustering analysis of IBD-associated genes and applied Ingenuity® pathway software to identify specific molecular profiles between patients.

Overall design

We analyzed RNA gene expression profiles of peripheral blood leucocytes (PBL) from pediatric IBD patients in clinical remission and age-matched controls.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 58 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 3 linked publications 3 DOIs Primary publication Gene expression analysis of peripheral cells for subclassification of pediatric inflammatory bowel disease in remission. PloS one, 2013 PubMed DOI Related publications Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease. Computers in biology and medicine, 2025 PubMed DOI Identification of crucial genes of pediatric inflammatory bowel disease in remission by protein-protein interaction network and module analyses. Minerva pediatrics, 2023 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Inflammatory bowel disease Disease context came from Normalization rules.
Likely case group Inflammatory bowel disease 45 samples
Likely control group Control 13 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
Interpreted disease metadata: Inflammatory bowel disease.
Processed data is available for downstream review.
External evidence: PubMed links 3 publications; 3 DOIs available: PMID 24260248, PMID 29381010, PMID 39894009.
Publication context: Gene expression analysis of peripheral cells for subclassification of pediatric inflammatory bowel disease in remission.. PloS one, 2013. PMID 24260248. DOI 10.1371/journal.pone.0079549.
Publication context: Identification of crucial genes of pediatric inflammatory bowel disease in remission by protein-protein interaction network and module analyses.. Minerva pediatrics, 2023. PMID 29381010. DOI 10.23736/S2724-5276.18.04997-6.
Publication context: Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease.. Computers in biology and medicine, 2025. PMID 39894009. DOI 10.1016/j.compbiomed.2025.109742.

Cautions

Downgraded for tissue search because it is a biofluid cohort.
Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

107 fields

Field Value Source Derived by Confidence Evidence Reason

assay_type microarray GSE33943 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE33943 dataset_title: Gene expression profiles of pediatric IBD remission patients organism: Homo sapiens assay_type: microarray processed_data_available: t... keyword match keyword match: microarray

disease inflammatory bowel disease GSE33943 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE33943 dataset_title: Gene expression profiles of pediatric IBD remission patients organism: Homo sapiens assay_type: microarray processed_data_available: t... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839186 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_01 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839187 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_02 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839188 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_03 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839189 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_4-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839190 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_05 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839191 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_06 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839192 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_08 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839193 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_10-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839194 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_11 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839195 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_13-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839196 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_14-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839197 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_17-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839198 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_18-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839199 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_19-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839200 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_20 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839201 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_21 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839202 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_22 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839203 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_24 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839204 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_25 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839205 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_26 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839206 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_27 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839207 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_28 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839208 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_29 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839209 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_30 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839210 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_31 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839211 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_32 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839212 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_33 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839213 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_34 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839214 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_35 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839215 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_36 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839216 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_37 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839217 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_38 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839218 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_39 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839219 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_40 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839220 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_41 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839221 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_42 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839222 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_43 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839223 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_44-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839224 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_47-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839225 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_48-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839226 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_50 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839227 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_51 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839228 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_52 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839229 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_53 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM839230 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd Pieter_54 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary disease match: ibd

organism Homo sapiens GSE33943 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE33943 dataset_title: Gene expression profiles of pediatric IBD remission patients organism: Homo sapiens assay_type: microarray processed_data_available: t... keyword match keyword match: homo sapiens

tissue blood GSE33943 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood dataset_accession: GSE33943 dataset_title: Gene expression profiles of pediatric IBD remission patients organism: Homo sapiens assay_type: microarray processed_data_available: t... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839186 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_01 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839187 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_02 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839188 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_03 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839189 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_4-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839190 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_05 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839191 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_06 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839192 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_08 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839193 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_10-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839194 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_11 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839195 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_13-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_14-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_17-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_18-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_19-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_20 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_21 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_22 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_24 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_25 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_26 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839206 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_27 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839207 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_28 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839208 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_29 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839209 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_30 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839210 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_31 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839211 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_32 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839212 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_33 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839213 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_34 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839214 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_35 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839215 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_36 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839216 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_37 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839217 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_38 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839218 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_39 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839219 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_40 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839220 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_41 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839221 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_42 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839222 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_43 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839223 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_44-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839224 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_47-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839225 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_48-2 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839226 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_50 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839227 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_51 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839228 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_52 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839229 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_53 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839230 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_54 pediatric IBD patients in clinical remission tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839231 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_101 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839232 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_102 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839233 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_104 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839234 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_105 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839235 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_106 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839236 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_107 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839237 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_108 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839238 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_110 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839239 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_111 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839240 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_112 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839241 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_113 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839242 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_114 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM839243 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood Pieter_45 age-matched control tissue/cell type: peripheral blood leucocytes (PBL) controlled vocabulary controlled vocabulary tissue match: blood

Sample Group Preview

58 rows shown Show Hide

Study totals: Case 45 | Control 13 | Unassigned 0 | Excluded 0 | Ambiguous 0 58 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Inflammatory bowel disease	Case	GSM839186	Pieter_01	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839187	Pieter_02	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839188	Pieter_03	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839189	Pieter_4-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839190	Pieter_05	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839191	Pieter_06	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839192	Pieter_08	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839193	Pieter_10-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839194	Pieter_11	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839195	Pieter_13-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839196	Pieter_14-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839197	Pieter_17-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839198	Pieter_18-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839199	Pieter_19-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839200	Pieter_20	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839201	Pieter_21	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839202	Pieter_22	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839203	Pieter_24	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839204	Pieter_25	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839205	Pieter_26	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839206	Pieter_27	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839207	Pieter_28	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839208	Pieter_29	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839209	Pieter_30	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839210	Pieter_31	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839211	Pieter_32	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839212	Pieter_33	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839213	Pieter_34	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839214	Pieter_35	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839215	Pieter_36	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839216	Pieter_37	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839217	Pieter_38	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839218	Pieter_39	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839219	Pieter_40	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839220	Pieter_41	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839221	Pieter_42	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839222	Pieter_43	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839223	Pieter_44-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839224	Pieter_47-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839225	Pieter_48-2	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839226	Pieter_50	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839227	Pieter_51	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839228	Pieter_52	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839229	Pieter_53	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Inflammatory bowel disease	Case	GSM839230	Pieter_54	Pediatric IBD patients in clinical remission Tissue/cell type: Peripheral blood leucocytes (PBL)	Case marker detected.
Control	Control	GSM839231	Pieter_101	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839232	Pieter_102	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839233	Pieter_104	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839234	Pieter_105	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839235	Pieter_106	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839236	Pieter_107	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839237	Pieter_108	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839238	Pieter_110	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839239	Pieter_111	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839240	Pieter_112	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839241	Pieter_113	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839242	Pieter_114	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.
Control	Control	GSM839243	Pieter_45	Age-matched control Tissue/cell type: Peripheral blood leucocytes (PBL)	Sample-local control marker detected.

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Use as Discovery Cohort