GSE36807

Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples.

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

28 case / 7 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 35 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Montero-Melendez T, Llor X, Perretti M, Suarez A, Montero T
Contact name: Trinidad Montero
Submission date: 2012-03-26
Last update: 2019-03-25
Organization: Whilliam Harvey Research Institute, Bart's and The London School of Medicine; Queen Mary University of London
Department: Biochemical Pharmacology
Public date: 2013-09-23
Experiment types: Expression profiling by array
Platforms: GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA156835

Summary

Gene expression patterns of Crohn's disease (CD) and ulcerative colitis (UC) colonic specimens were analyzed using whole-genome microarrays. Healthy control samples were included in order to detect gene expression changes associated with CD or UC. CD and UC samples were also compared in order to identify the molecular mechanisms that distinguish both fenotypes of inflammatory bowel disease.

Overall design

Total RNA obtained from intestinal biopsies were analyzed using whole-genome microarrays.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 35 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 21 linked publications 21 DOIs Primary publication Identification of novel predictor classifiers for inflammatory bowel disease by gene expression profiling. PloS one, 2013 PubMed DOI Related publications Combined Bulk and Single-Cell Transcriptomic Analysis to Reveal the Potential Influences of Intestinal Inflammatory Disease on Multiple Sclerosis. Inflammation, 2025 PubMed DOI Identification of useful genes from multiple microarrays for ulcerative colitis diagnosis based on machine learning methods. Scientific reports, 2022 PubMed DOI Analysis of the molecular mechanisms of ulcerative colitis and atherosclerosis by microarray data. Scientific reports, 2025 PubMed DOI Intercellular adhesion molecule 1 and selectin l play crucial roles in ulcerative colitis. Medicine, 2023 PubMed DOI Artemisinin Alleviates Intestinal Inflammation and Metabolic Disturbance in Ulcerative Colitis Rats Induced by DSS. Evidence-based complementary and alternative medicine : eCAM, 2022 PubMed DOI Bioinformatics Analysis of Immune Cell Infiltration and Diagnostic Biomarkers between Ankylosing Spondylitis and Inflammatory Bowel Disease. Computational and mathematical methods in medicine, 2023 PubMed DOI Integrated Multiomics Elucidates Molecular Mechanisms of Bisphenol A in Exacerbating Crohn's Disease. Mediators of inflammation, 2026 PubMed DOI Screening of characteristic genes in ulcerative colitis by integrating gene expression profiles. BMC gastroenterology, 2021 PubMed DOI Identification of key genes as diagnostic biomarkers for IBD using bioinformatics and machine learning. Journal of translational medicine, 2025 PubMed DOI Analysis of common differential gene expression between rheumatoid arthritis and ulcerative colitis. PloS one, 2026 PubMed DOI [Bioinformatic analysis of differentially expressed genes and Chinese medicine prediction for ulcerative colitis]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica, 2020 PubMed DOI Identification and Experimental Validation of Oxidative Stress-Related Biomarkers in Ulcerative Colitis Using Machine Learning. Journal of inflammation research, 2025 PubMed DOI Identification CCL2,CXCR2,S100A9 of the immune-related gene markers and immune infiltration characteristics of inflammatory bowel disease and heart failure via bioinformatics analysis and machine learning. Frontiers in cardiovascular medicine, 2023 PubMed DOI Construction of a neural network diagnostic model and investigation of immune infiltration characteristics for Crohn's disease. Frontiers in genetics, 2022 PubMed DOI Integrated analysis of multiple microarray studies to establish differential diagnostic models of Crohn's disease and ulcerative colitis based on a metalloproteinase-associated module. Frontiers in immunology, 2022 PubMed DOI Comprehensive analysis to identify the influences of SARS-CoV-2 infections to inflammatory bowel disease. Frontiers in immunology, 2023 PubMed DOI Machine learning-based solution reveals cuproptosis features in inflammatory bowel disease. Frontiers in immunology, 2023 PubMed DOI Multi-omics analysis identified macrophages as key contributors to sex-related differences in ulcerative colitis. Frontiers in immunology, 2025 PubMed DOI Advances in Inflammatory Bowel Disease Diagnostics: Machine Learning and Genomic Profiling Reveal Key Biomarkers for Early Detection. Diagnostics (Basel, Switzerland), 2024 PubMed DOI Comprehensive analysis of gene expression profiles provides insight into the pathogenesis of Crohn's disease. Molecular medicine reports, 2018 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Crohn's disease 28 samples
Likely control group Healthy control 7 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 21 publications; 21 DOIs available: PMID 24155895, PMID 30015893, PMID 32489050, PMID 34717557, PMID 35497913.
Publication context: Identification of novel predictor classifiers for inflammatory bowel disease by gene expression profiling.. PloS one, 2013. PMID 24155895. DOI 10.1371/journal.pone.0076235.
Publication context: Comprehensive analysis of gene expression profiles provides insight into the pathogenesis of Crohn's disease.. Molecular medicine reports, 2018. PMID 30015893. DOI 10.3892/mmr.2018.9267.
Publication context: [Bioinformatic analysis of differentially expressed genes and Chinese medicine prediction for ulcerative colitis].. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica, 2020. PMID 32489050. DOI 10.19540/j.cnki.cjcmm.20191030.401.
Publication context: 18 additional linked PubMed publications are available.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

161 fields

Field Value Source Derived by Confidence Evidence Reason

assay_type microarray GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... keyword match keyword match: microarray

collection_method biopsy GSM901319 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1903_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901320 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1904_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901321 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1905_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901322 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1906_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901323 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1907_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901324 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1910_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901325 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1911_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901326 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1892_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901327 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1893_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901328 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1894_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901329 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1895_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901330 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1896_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901331 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1897_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901332 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1898_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901333 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1899_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901334 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1900_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901335 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1901_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901336 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1912_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901337 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1914_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901338 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1915_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901339 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1878_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901340 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1879_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901341 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1880_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901342 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1881_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901343 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1882_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901344 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1883_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901345 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1884_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901346 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1885_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901347 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1886_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901348 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1887_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901349 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1888_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901350 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1889_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901351 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1890_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901352 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1891_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM901353 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1913_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary collection method match: biopsy

control_type healthy control GSM901319 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1903_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM901320 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1904_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM901321 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1905_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM901322 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1906_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM901323 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1907_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM901324 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1910_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM901325 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1911_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary control type match: healthy control

disease Crohn's disease GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease inflammatory bowel disease GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel disease dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary disease match: inflammatory bowel disease

disease ulcerative colitis GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM901326 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1892_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901327 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1893_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901328 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1894_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901329 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1895_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901330 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1896_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901331 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1897_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901332 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1898_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901333 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1899_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901334 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1900_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901335 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1901_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901336 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1912_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901337 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1914_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM901338 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 08SE1915_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM901339 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1878_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901340 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1879_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901341 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1880_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901342 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1881_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901343 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1882_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901344 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1883_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901345 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1884_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901346 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1885_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901347 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1886_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901348 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1887_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901349 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1888_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901350 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1889_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901351 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1890_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901352 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1891_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM901353 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 08SE1913_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary disease match: ulcerative colitis

normal_tissue_type healthy donor tissue GSM901319 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1903_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM901320 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1904_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM901321 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1905_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM901322 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1906_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM901323 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1907_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM901324 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1910_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM901325 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1911_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary normal tissue type match: healthy control

organism Homo sapiens GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM901319 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1903_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901320 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1904_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901321 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1905_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901322 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1906_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901323 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1907_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901324 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1910_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901325 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1911_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901326 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1892_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901327 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1893_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901328 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1894_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901329 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1895_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901330 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1896_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901331 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1897_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901332 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1898_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901333 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1899_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901334 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1900_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901335 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1901_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901336 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1912_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901337 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1914_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901338 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1915_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901339 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1878_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901340 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1879_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901341 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1880_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901342 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1881_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901343 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1882_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901344 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1883_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901345 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1884_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901346 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1885_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901347 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1886_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901348 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1887_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901349 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1888_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901350 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1889_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901351 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1890_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901352 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1891_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM901353 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 08SE1913_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type normal tissue GSM901319 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1903_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM901320 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1904_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM901321 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1905_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM901322 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1906_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM901323 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1907_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM901324 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1910_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM901325 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 08SE1911_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary sample type match: healthy control

tissue colon GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary tissue match: colonic

tissue intestine GSE36807 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal dataset_accession: GSE36807 dataset_title: Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901319 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1903_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901320 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1904_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901321 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1905_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901322 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1906_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901323 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1907_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901324 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1910_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901325 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1911_Healthy control Intestinal biopsy diagnosis: Healthy control; gender: Unknown; smoker: Unknown controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901326 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1892_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901327 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1893_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901328 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1894_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901329 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1895_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901330 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1896_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901331 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1897_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901332 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1898_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901333 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1899_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901334 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1900_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901335 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1901_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901336 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1912_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901337 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1914_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901338 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1915_Crohn's Disease Intestinal biopsy diagnosis: Crohn's Disease; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901339 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1878_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901340 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1879_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901341 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1880_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: Yes controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901342 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1881_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901343 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1882_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901344 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1883_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901345 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1884_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901346 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1885_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901347 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1886_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901348 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1887_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901349 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1888_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901350 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1889_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901351 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1890_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901352 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1891_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Female; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM901353 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 08SE1913_Ulcerative colitis Intestinal biopsy diagnosis: Ulcerative colitis; gender: Male; smoker: No controlled vocabulary controlled vocabulary tissue match: intestinal

Sample Group Preview

35 rows shown Show Hide

Study totals: Case 28 | Control 7 | Unassigned 0 | Excluded 0 | Ambiguous 0 35 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Crohn's disease	Case	GSM901326	08SE1892_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: Yes	Case marker detected.
Crohn's disease	Case	GSM901327	08SE1893_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Female; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901328	08SE1894_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901329	08SE1895_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901330	08SE1896_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Female; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901331	08SE1897_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: Yes	Case marker detected.
Crohn's disease	Case	GSM901332	08SE1898_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: Yes	Case marker detected.
Crohn's disease	Case	GSM901333	08SE1899_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: Yes	Case marker detected.
Crohn's disease	Case	GSM901334	08SE1900_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Female; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901335	08SE1901_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Female; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901336	08SE1912_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901337	08SE1914_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: No	Case marker detected.
Crohn's disease	Case	GSM901338	08SE1915_Crohn's Disease	Intestinal biopsy Diagnosis: Crohn's Disease; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901339	08SE1878_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901340	08SE1879_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901341	08SE1880_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: Yes	Case marker detected.
Ulcerative colitis	Case	GSM901342	08SE1881_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901343	08SE1882_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901344	08SE1883_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901345	08SE1884_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901346	08SE1885_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901347	08SE1886_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901348	08SE1887_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901349	08SE1888_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901350	08SE1889_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901351	08SE1890_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901352	08SE1891_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Female; Smoker: No	Case marker detected.
Ulcerative colitis	Case	GSM901353	08SE1913_Ulcerative colitis	Intestinal biopsy Diagnosis: Ulcerative colitis; Gender: Male; Smoker: No	Case marker detected.
Healthy control	Control	GSM901319	08SE1903_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.
Healthy control	Control	GSM901320	08SE1904_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.
Healthy control	Control	GSM901321	08SE1905_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.
Healthy control	Control	GSM901322	08SE1906_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.
Healthy control	Control	GSM901323	08SE1907_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.
Healthy control	Control	GSM901324	08SE1910_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.
Healthy control	Control	GSM901325	08SE1911_Healthy control	Intestinal biopsy Diagnosis: Healthy control; Gender: Unknown; Smoker: Unknown	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

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Use as Discovery Cohort