GSE41258

Expression data from colorectal cancer patients

Whole-study status Needs manual review

Scores are usable, but sample metadata contains review-only concerns.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

299 case / 79 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
microarray
Organism
Homo sapiens
Whole-study samples
390 samples
Specimen
Tissue
Reported/interpreted study design
Tumor vs normal; consult patient linkage Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
Sheffer M, Bacolod MD, Zuk O, Giardina SF, Pincas H, Barany F, Paty PB, Gerald WL, Notterman DA, Domany E
Contact name
Michal Sheffer
Submission date
2012-10-01
Last update
2019-05-23
Organization
Weizmann Institute of Science
Department
Not available
Public date
2012-10-02
Experiment types
Expression profiling by array
Platforms
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Series type
Series
SubSeries
Not available
BioProject
PRJNA176361

Summary

The study consist of patients who presented at Memorial Sloan-Kettering Cancer Center with a colonic neoplasm between 1992 and 2004. Biological specimens used in this study include primary colon adenocarcinomas, adenomas, metastasis and corresponding normal mucosae.

Overall design

390 expression arrays

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
390 GSM samples
 Primary source
recount3

Planned trusted source for processed count availability.

 No match found
Expression Atlas

Planned source for curated expression experiment links.

 No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

22 linked publications 22 DOIs

Primary publication

  1. Logarithmic expansion of LGR5(+) cells in human colorectal cancer. Cellular signalling, 2018
  2. Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer. Proceedings of the National Academy of Sciences of the United States of America, 2009

Related publications

  1. SERPINC1, a new prognostic predictor of colon cancer, promote colon cancer progression through EMT. Cancer reports (Hoboken, N.J.), 2024
  2. KAT2A alleviates the glucose starvation-induced mitochondrial oxidative stress and ferroptosis to promote colon cancer progression. Apoptosis : an international journal on programmed cell death, 2025
  3. Identification of novel diagnostic biomarkers associated with liver metastasis in colon adenocarcinoma by machine learning. Discover oncology, 2024
  4. Downregulation of solute carrier family 4 members 4 as a biomarker for colorectal cancer. Discover oncology, 2025
  5. SLC38A4 as a prognostic biomarker and correlated with immune infiltration in colorectal liver metastasis. Discover oncology, 2025
  6. DNA hypomethylation patterns and their impact on the tumor microenvironment in colorectal cancer. Cellular oncology (Dordrecht, Netherlands), 2024
  7. Machine learning-based screening and validation of liver metastasis-specific genes in colorectal cancer. Scientific reports, 2024
  8. Identification of biomarkers for the diagnosis in colorectal polyps and metabolic dysfunction-associated steatohepatitis (MASH) by bioinformatics analysis and machine learning. Scientific reports, 2024
  9. Comprehensive bioinformatic analysis reveals prognostic significance and functional insights of candidate gene expression in colorectal cancer. Scientific reports, 2025
  10. Identification and prognostic analysis of candidate biomarkers for lung metastasis in colorectal cancer. Medicine, 2024
  11. Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer. BMC gastroenterology, 2023
  12. Dietary restriction-responsive genes define prognostic subtypes and predict metastasis in colorectal cancer. Translational cancer research, 2025
  13. Characterization and validation of a prognostic model for the N6-methyladenosine-associated ferroptosis gene in colon adenocarcinoma. Translational cancer research, 2024
  14. Identification of the six-hormone secretion-related gene signature as a prognostic biomarker for colon adenocarcinoma. Cancer biomarkers : section A of Disease markers, 2023
  15. Bioinformatics combined with machine learning for the identification of malignant transformation markers in colorectal polyps. Frontiers in molecular biosciences, 2026
  16. MDK Activates the PI3K/AKT Axis to Induce AP2A1 Expression and Epithelial-Mesenchymal Transition in Colorectal Cancer. Cancers, 2026
  17. Network Pharmacology and Bioinformatics Study of Six Medicinal Food Homologous Plants Against Colorectal Cancer. International journal of molecular sciences, 2025
  18. Combined Analysis of Bulk and Single-Cell Transcriptomic Data Reveals Dormancy-Associated Genes in Colorectal Cancer. International journal of molecular sciences, 2026
  19. Construction of a Prognostic Model based on CSC-related Genes in Patients with Colorectal Cancer. Journal of Cancer, 2025
  20. Identification and validation of butyrate metabolism-related biomarkers for colorectal cancer diagnosis. PeerJ, 2026
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review
94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

12/15 pts

All non-excluded samples are assigned; excluded samples should still be confirmed.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Needs review

12 samples have hard exclusion flags in the proposed grouping.

Confirm excluded samples and preserve the reason in the analysis handoff.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Needs manual review Scores are usable, but sample metadata contains review-only concerns.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Colorectal cancer, colorectal neoplasm, lung metastasis Disease context came from Normalization rules.
  • Likely case group Colorectal cancer 299 samples
  • Likely control group Normal tissue 79 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Tumor vs unmatched normal. Specimen: Tissue. Comparison suitability: 60%.
  • Interpreted disease metadata: Colorectal cancer, Colorectal neoplasm, Lung metastasis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 22 publications; 22 DOIs available: PMID 19359472, PMID 28958617, PMID 37563546, PMID 38143338, PMID 38489730.
  • Publication context: Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer.. Proceedings of the National Academy of Sciences of the United States of America, 2009. PMID 19359472. DOI 10.1073/pnas.0902232106.
  • Publication context: Logarithmic expansion of LGR5(+) cells in human colorectal cancer.. Cellular signalling, 2018. PMID 28958617. DOI 10.1016/j.cellsig.2017.09.018.
  • Publication context: Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer.. BMC gastroenterology, 2023. PMID 37563546. DOI 10.1186/s12876-023-02896-z.
  • Publication context: 19 additional linked PubMed publications are available.

Cautions

  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Excluded sample type flags reduce suitability.
  • Excluded model-system sample markers reduce suitability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 1877 fields

Sample Group Preview

showing 112 of 390 preview rows Show Hide
Study totals: Case 299 | Control 79 | Unassigned 0 | Excluded 12 | Ambiguous 0 showing 112 of 390 preview rows
Group Role Accession Title Source / characteristics Reason
Colorectal cancer Case GSM1012278 Polyp 00300BR2 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 25/02/2004; Patient id: 300; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012279 Liver Metastasis 00450UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 13/02/2004; Patient id: 450; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012280 Liver Metastasis 00450UR1_ez Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 13/02/2004; Patient id: 450; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012281 Liver Metastasis 00450UR2 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 13/02/2004; Patient id: 450; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012282 Liver Metastasis 00464UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37659; Patient id: 464; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012283 Liver Metastasis 00485UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37659; Patient id: 485; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012284 Liver Metastasis 00485UR1_ez Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37664; Patient id: 485; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012285 Liver Metastasis 00485UR2 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 13/02/2004; Patient id: 485; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012286 Primary Tumor 00620AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 620; Included in analysis: Yes; Sample date: 37687; Age: 70; Gender: F; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 5; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSI-high; p53 mutation status: NA; Anatomic location: Ascending colon Explicit sample label case marker detected.
Tumor sample Case GSM1012287 Liver Metastasis 00823UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37659; Patient id: 823; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012288 Liver Metastasis 00823UR1_ez Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37664; Patient id: 823; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012289 Liver Metastasis 00823UR2 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 13/02/2004; Patient id: 823; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012290 Liver Metastasis 00838UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37659; Patient id: 838; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012291 Liver Metastasis 00838UR1_ez Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37664; Patient id: 838; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012292 Liver Metastasis 00838UR2 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 13/02/2004; Patient id: 838; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012293 Liver Metastasis 00852UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37659; Patient id: 852; Included in analysis: Yes Case marker detected.
Colorectal cancer Case GSM1012295 Polyp 00888BR1 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 37659; Patient id: 888; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012296 Liver Metastasis 00947UR1 Tissue samples taken from colorectal cancer patients Tissue: Liver Metastasis; Scan date: 37659; Patient id: 947; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012297 Primary Tumor 00990AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 990; Included in analysis: Yes; Sample date: 37687; Age: 78; Gender: M; T: 3; N: 1; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 82; Recurrence: No; Recurrence interval: NA; Microsattelite instability: NA; p53 mutation status: Mutant; Anatomic location: Sigmoid colon Explicit sample label case marker detected.
Tumor sample Case GSM1012299 Lung Metastasis 01720VR1 Tissue samples taken from colorectal cancer patients Tissue: Lung Metastasis; Scan date: 22/07/2003; Patient id: 1720; Included in analysis: No Case marker detected.
Colorectal cancer Case GSM1012300 Polyp 01984BR1 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 37901; Patient id: 1984; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012302 Lung Metastasis 02050VR1 Tissue samples taken from colorectal cancer patients Tissue: Lung Metastasis; Scan date: 22/07/2003; Patient id: 2050; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012303 Primary Tumor 02184AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 25/02/2004; Patient id: 2184; Included in analysis: Yes; Sample date: 25/02/2004; Age: 40; Gender: F; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 61; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Explicit sample label case marker detected.
Tumor sample Case GSM1012305 Primary Tumor 02189AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 2189; Included in analysis: Yes; Sample date: 37687; Age: 70; Gender: M; T: 3; N: 1; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 130; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Explicit sample label case marker detected.
Tumor sample Case GSM1012307 Primary Tumor 02308AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 2308; Included in analysis: Yes; Sample date: 37687; Age: 63; Gender: F; T: 3; N: 0; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 12; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Descending colon Explicit sample label case marker detected.
Tumor sample Case GSM1012308 Primary Tumor 02500AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 2500; Included in analysis: Yes; Sample date: 37687; Age: 81; Gender: M; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 52; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Ascending colon Explicit sample label case marker detected.
Colorectal cancer Case GSM1012309 Polyp 02663BR1 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 37659; Patient id: 2663; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012310 Primary Tumor 02679AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37901; Patient id: 2679; Included in analysis: Yes; Sample date: 37901; Age: 70; Gender: F; T: 3; N: 1; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 143; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Explicit sample label case marker detected.
Tumor sample Case GSM1012312 Primary Tumor 02779AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37901; Patient id: 2779; Included in analysis: Yes; Sample date: 37901; Age: 66; Gender: F; T: 1; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 89; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Rectosigmoid Explicit sample label case marker detected.
Tumor sample Case GSM1012314 Primary Tumor 02815AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 25/02/2004; Patient id: 2815; Included in analysis: Yes; Sample date: 25/02/2004; Age: 55; Gender: M; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 72; Recurrence: Yes; Recurrence interval: 45; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Explicit sample label case marker detected.
Tumor sample Case GSM1012316 Primary Tumor 02832AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37901; Patient id: 2832; Included in analysis: Yes; Sample date: 37901; Age: 70; Gender: M; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 20; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Transverse colon Explicit sample label case marker detected.
Tumor sample Case GSM1012317 Primary Tumor 03023AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 3023; Included in analysis: Yes; Sample date: 37687; Age: 49; Gender: F; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 16; Recurrence: Yes; Recurrence interval: 14; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Explicit sample label case marker detected.
Tumor sample Case GSM1012319 Primary Tumor 03156AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37901; Patient id: 3156; Included in analysis: Yes; Sample date: 37901; Age: 80; Gender: M; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 79; Recurrence: Yes; Recurrence interval: 68; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Sigmoid colon Explicit sample label case marker detected.
Tumor sample Case GSM1012320 Primary Tumor 03283AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 25/02/2004; Patient id: 3283; Included in analysis: Yes; Sample date: 25/02/2004; Age: 73; Gender: F; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 10; Recurrence: Yes; Recurrence interval: 0; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Ascending colon Explicit sample label case marker detected.
Tumor sample Case GSM1012321 Lung Metastasis 03358VR1 Tissue samples taken from colorectal cancer patients Tissue: Lung Metastasis; Scan date: 22/07/2003; Patient id: 3358; Included in analysis: No Case marker detected.
Tumor sample Case GSM1012322 Primary Tumor 03393AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 3393; Included in analysis: Yes; Sample date: 37687; Age: 68; Gender: F; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 153; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectum Explicit sample label case marker detected.
Colorectal cancer Case GSM1012323 Polyp 03393BR1 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 37687; Patient id: 3393; Included in analysis: Yes; Sample date: 37687; Age: 68; Gender: F; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 153; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectum Case marker detected.
Tumor sample Case GSM1012324 Primary Tumor 03401AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37901; Patient id: 3401; Included in analysis: Yes; Sample date: 37901; Age: 75; Gender: M; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 12; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSI-low; p53 mutation status: Mutant; Anatomic location: Cecum Explicit sample label case marker detected.
Tumor sample Case GSM1012325 Primary Tumor 03465AR3 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 38607; Patient id: 3465; Included in analysis: Yes; Sample date: 38607; Age: 53; Gender: M; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 114; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSI-high; p53 mutation status: NA; Anatomic location: Descending colon Explicit sample label case marker detected.
Tumor sample Case GSM1012326 Primary Tumor 03519AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 25/02/2004; Patient id: 3519; Included in analysis: Yes; Sample date: 25/02/2004; Age: 71; Gender: M; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 13; Recurrence: Yes; Recurrence interval: 7; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Ascending colon Explicit sample label case marker detected.
Tumor sample Case GSM1012328 Primary Tumor 03531AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 25/02/2004; Patient id: 3531; Included in analysis: Yes; Sample date: 25/02/2004; Age: 42; Gender: M; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 10; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSI-high; p53 mutation status: Wild-type; Anatomic location: Transverse colon Explicit sample label case marker detected.
Colorectal cancer Case GSM1012329 Polyp 03598BR2 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 38021; Patient id: 3598; Included in analysis: Yes Case marker detected.
Tumor sample Case GSM1012331 Primary Tumor 03637AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 38021; Patient id: 3637; Included in analysis: Yes; Sample date: 38021; Age: 77; Gender: F; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 35; Recurrence: Yes; Recurrence interval: 18; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Explicit sample label case marker detected.
Colorectal cancer Case GSM1012332 Polyp 03637BR2 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 38021; Patient id: 3637; Included in analysis: Yes; Sample date: 38021; Age: 77; Gender: F; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 35; Recurrence: Yes; Recurrence interval: 18; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Case marker detected.
Tumor sample Case GSM1012334 Primary Tumor 03657AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 38021; Patient id: 3657; Included in analysis: Yes; Sample date: 38021; Age: 41; Gender: F; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 137; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Transverse colon Explicit sample label case marker detected.
Tumor sample Case GSM1012336 Primary Tumor 03706AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 38021; Patient id: 3706; Included in analysis: Yes; Sample date: 38021; Age: 61; Gender: M; T: 3; N: 0; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 37; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Descending colon Explicit sample label case marker detected.
Tumor sample Case GSM1012338 Primary Tumor 03752AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37687; Patient id: 3752; Included in analysis: Yes; Sample date: 37687; Age: 54; Gender: M; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 136; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Explicit sample label case marker detected.
Tumor sample Case GSM1012339 Primary Tumor 03753AR1 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 37901; Patient id: 3753; Included in analysis: Yes; Sample date: 37901; Age: 75; Gender: M; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 12; Recurrence: Yes; Recurrence interval: 12; Microsattelite instability: MSI-high; p53 mutation status: Wild-type; Anatomic location: Cecum Explicit sample label case marker detected.
Tumor sample Case GSM1012341 Primary Tumor 03777AR2 Tissue samples taken from colorectal cancer patients Tissue: Primary Tumor; Scan date: 38021; Patient id: 3777; Included in analysis: Yes; Sample date: 38021; Age: 69; Gender: F; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 28; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Explicit sample label case marker detected.
Tumor sample Case GSM1012343 Lung Metastasis 03820VR1 Tissue samples taken from colorectal cancer patients Tissue: Lung Metastasis; Scan date: 22/07/2003; Patient id: 3820; Included in analysis: Yes Case marker detected.
249 additional case samples are hidden from this preview.
Normal tissue Control GSM1012294 Normal Liver 00871KR3 Tissue samples taken from colorectal cancer patients Tissue: Normal Liver; Scan date: 38607; Patient id: 871; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012298 Normal Lung 01720MR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 22/07/2003; Patient id: 1720; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012301 Normal Lung 02050MR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 22/07/2003; Patient id: 2050; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012304 Normal Colon 02184HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 17/11/2005; Patient id: 2184; Included in analysis: Yes; Sample date: 25/02/2004; Age: 40; Gender: F; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 61; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012306 Normal Colon 02189HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/02/2006; Patient id: 2189; Included in analysis: Yes; Sample date: 37687; Age: 70; Gender: M; T: 3; N: 1; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 130; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Sample-local control marker detected.
Control Control GSM1012311 Polyp 02679BR1 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 37687; Patient id: 2679; Included in analysis: Yes; Sample date: 37901; Age: 70; Gender: F; T: 3; N: 1; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 143; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Control marker detected.
Control Control GSM1012313 Polyp 02779BR1 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 37687; Patient id: 2779; Included in analysis: Yes; Sample date: 37901; Age: 66; Gender: F; T: 1; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 89; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Rectosigmoid Control marker detected.
Normal tissue Control GSM1012315 Normal Colon 02815HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 2815; Included in analysis: Yes; Sample date: 25/02/2004; Age: 55; Gender: M; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 72; Recurrence: Yes; Recurrence interval: 45; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012318 Normal Colon 03023HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38991; Patient id: 3023; Included in analysis: Yes; Sample date: 37687; Age: 49; Gender: F; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 16; Recurrence: Yes; Recurrence interval: 14; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012327 Normal Colon 03519HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 3519; Included in analysis: Yes; Sample date: 25/02/2004; Age: 71; Gender: M; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 13; Recurrence: Yes; Recurrence interval: 7; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012330 Normal Colon 03598HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 3598; Included in analysis: Yes Sample-local control marker detected.
Normal tissue Control GSM1012333 Normal Colon 03637HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38021; Patient id: 3637; Included in analysis: Yes; Sample date: 38021; Age: 77; Gender: F; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 35; Recurrence: Yes; Recurrence interval: 18; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Sample-local control marker detected.
Normal tissue Control GSM1012335 Normal Colon 03657HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 3657; Included in analysis: Yes; Sample date: 38021; Age: 41; Gender: F; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 137; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Transverse colon Sample-local control marker detected.
Normal tissue Control GSM1012337 Normal Colon 03706HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38991; Patient id: 3706; Included in analysis: Yes; Sample date: 38021; Age: 61; Gender: M; T: 3; N: 0; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 37; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Descending colon Sample-local control marker detected.
Normal tissue Control GSM1012340 Normal Colon 03753HR3 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38607; Patient id: 3753; Included in analysis: Yes; Sample date: 37901; Age: 75; Gender: M; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 12; Recurrence: Yes; Recurrence interval: 12; Microsattelite instability: MSI-high; p53 mutation status: Wild-type; Anatomic location: Cecum Sample-local control marker detected.
Normal tissue Control GSM1012342 Normal Colon 03777hr3 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/05/2006; Patient id: 3777; Included in analysis: Yes; Sample date: 38021; Age: 69; Gender: F; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 28; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Sample-local control marker detected.
Normal tissue Control GSM1012345 Normal Colon 03862HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 3862; Included in analysis: Yes; Sample date: 38021; Age: 74; Gender: M; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 76; Recurrence: Yes; Recurrence interval: 52; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Transverse colon Sample-local control marker detected.
Normal tissue Control GSM1012347 Normal Colon 04176HR3 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38607; Patient id: 4176; Included in analysis: Yes; Sample date: 22/04/2004; Age: 58; Gender: F; T: 4; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 21; Recurrence: Yes; Recurrence interval: 0; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Descending colon Sample-local control marker detected.
Normal tissue Control GSM1012348 Normal Lung 04222MR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 22/07/2003; Patient id: 4222; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012351 Normal Colon 04276HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 4276; Included in analysis: Yes; Sample date: 22/04/2004; Age: 58; Gender: M; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 107; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012355 Normal Colon 04494HR4 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 4494; Included in analysis: Yes; Sample date: 38296; Age: 65; Gender: M; T: 3; N: 0; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 4; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012357 Normal Colon 04549HR4 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/03/2006; Patient id: 4549; Included in analysis: Yes; Sample date: 38296; Age: 60; Gender: M; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 6; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Cecum Sample-local control marker detected.
Normal tissue Control GSM1012359 Normal Colon 04800hr4 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/05/2006; Patient id: 4800; Included in analysis: Yes; Sample date: 22/04/2004; Age: 80; Gender: F; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 20; Recurrence: Yes; Recurrence interval: 8; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012369 Normal Colon 05786hr3 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/05/2006; Patient id: 5786; Included in analysis: Yes; Sample date: 19/05/2004; Age: 32; Gender: M; T: 3; N: 1; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 16; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012380 Normal Colon 06657HR3 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38607; Patient id: 6657; Included in analysis: Yes; Sample date: 38266; Age: 32; Gender: F; T: 3; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 137; Recurrence: Yes; Recurrence interval: 66; Microsattelite instability: MSI-low; p53 mutation status: Mutant; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012382 Normal Lung 06764MR3 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 38607; Patient id: 6764; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012403 Normal Lung 08088MR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 38991; Patient id: 8088; Included in analysis: No Control marker detected.
Control Control GSM1012420 Polyp 09728BR2 Tissue samples taken from colorectal cancer patients Tissue: Polyp; Scan date: 24/11/2004; Patient id: 9728; Included in analysis: Yes; Sample date: 24/11/2004; Age: 67; Gender: M; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 110; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Wild-type; Anatomic location: Cecum Control marker detected.
Normal tissue Control GSM1012435 Normal Lung 12051MR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 22/07/2003; Patient id: 12051; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012443 Normal Lung 13279MR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Lung; Scan date: 22/07/2003; Patient id: 13279; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012459 Normal Colon A1327HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 17/11/2005; Patient id: A1327; Included in analysis: Yes Sample-local control marker detected.
Normal tissue Control GSM1012465 Normal Colon A1853HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 17/11/2005; Patient id: A1853; Included in analysis: Yes Sample-local control marker detected.
Normal tissue Control GSM1012466 Normal Colon a2191hr Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/05/2006; Patient id: A2191; Included in analysis: Yes Sample-local control marker detected.
Normal tissue Control GSM1012483 Normal Colon A4410HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 17/11/2005; Patient id: A4410; Included in analysis: Yes Sample-local control marker detected.
Normal tissue Control GSM1012487 Normal Colon A4779HR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 17/11/2005; Patient id: A4779; Included in analysis: Yes; Sample date: 38513; Age: 68; Gender: M; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 40; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: NA; Anatomic location: Cecum Sample-local control marker detected.
Normal tissue Control GSM1012498 Normal Colon A5153HR Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38453; Patient id: A5153; Included in analysis: Yes Sample-local control marker detected.
Normal tissue Control GSM1012530 Normal Colon C0111HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/06/2003; Patient id: C0111; Included in analysis: Yes; Sample date: 13/06/2003; Age: 58; Gender: M; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 91; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSI-low; p53 mutation status: Mutant; Anatomic location: Transverse colon Sample-local control marker detected.
Normal tissue Control GSM1012534 Normal Colon C0114HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/06/2003; Patient id: C0114; Included in analysis: Yes; Sample date: 13/06/2003; Age: 45; Gender: F; T: 4; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 44; Recurrence: Yes; Recurrence interval: 24; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Cecum Sample-local control marker detected.
Normal tissue Control GSM1012537 Normal Colon C0117HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/06/2003; Patient id: C0117; Included in analysis: Yes; Sample date: 18/06/2003; Age: 71; Gender: M; T: 3; N: 0; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 38; Recurrence: Yes; Recurrence interval: 34; Microsattelite instability: NA; p53 mutation status: NA; Anatomic location: Cecum Sample-local control marker detected.
Normal tissue Control GSM1012540 Normal Colon C0123HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/06/2003; Patient id: C0123; Included in analysis: Yes; Sample date: 38473; Age: 56; Gender: F; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 112; Recurrence: No; Recurrence interval: NA; Microsattelite instability: NA; p53 mutation status: Mutant; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012548 Normal Colon C0134HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/06/2003; Patient id: C0134; Included in analysis: Yes; Sample date: 18/06/2003; Age: 65; Gender: F; T: 2; N: 0; M: 0; Group stage: I; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; Fup interval: 86; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSI-high; p53 mutation status: Wild-type; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012550 Normal Colon C0136HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 19/06/2003; Patient id: C0136; Included in analysis: Yes; Sample date: 28/05/2003; Age: 80; Gender: F; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; Fup interval: 1; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSI-low; p53 mutation status: Mutant; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012551 Normal Liver C0136KR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Liver; Scan date: 19/06/2003; Patient id: C0136; Included in analysis: No; Sample date: 28/05/2003; Age: 80; Gender: F; T: 3; N: 2; M: 1; Group stage: IV; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; Fup interval: 1; Recurrence: NA; Recurrence interval: NA; Microsattelite instability: MSI-low; p53 mutation status: Mutant; Anatomic location: Ascending colon Control marker detected.
Normal tissue Control GSM1012554 Normal Colon C0137HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 18/04/2003; Patient id: C0137; Included in analysis: Yes; Sample date: 18/04/2003; Age: 71; Gender: F; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; Fup interval: 134; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012555 Normal Liver C0139KR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Liver; Scan date: 24/04/2003; Patient id: C0139; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012556 Normal Liver C0139KR2 Tissue samples taken from colorectal cancer patients Tissue: Normal Liver; Scan date: 13/02/2004; Patient id: C0139; Included in analysis: No Control marker detected.
Normal tissue Control GSM1012563 Normal Colon C0147HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 37929; Patient id: C0147; Included in analysis: Yes; Sample date: 19/01/2005; Age: 73; Gender: F; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; Fup interval: 76; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Sigmoid colon Sample-local control marker detected.
Normal tissue Control GSM1012568 Normal Colon C0153HR1 Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 37929; Patient id: C0153; Included in analysis: Yes; Sample date: 37929; Age: 78; Gender: F; T: 3; N: 1; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; Fup interval: 27; Recurrence: Yes; Recurrence interval: 26; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Sample-local control marker detected.
Normal tissue Control GSM1012573 Normal Colon C0157H Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 28/12/2006; Patient id: C0157; Included in analysis: Yes; Sample date: 28/02/2006; Age: 68; Gender: M; T: 3; N: 0; M: 0; Group stage: II; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; Fup interval: 137; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Ascending colon Sample-local control marker detected.
Normal tissue Control GSM1012575 Normal Colon C0158H Tissue samples taken from colorectal cancer patients Tissue: Normal Colon; Scan date: 38453; Patient id: C0158; Included in analysis: Yes; Sample date: 37838; Age: 58; Gender: M; T: 2; N: 2; M: 0; Group stage: III; Fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; Fup interval: 117; Recurrence: No; Recurrence interval: NA; Microsattelite instability: MSS; p53 mutation status: Mutant; Anatomic location: Rectosigmoid Sample-local control marker detected.
29 additional control samples are hidden from this preview.
Excluded: Cell line Excluded GSM1012656 Cell line DLD1 Tissue samples taken from colorectal cancer patients Cell line: DLD1; Scan date: 27/02/2004; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012657 Cell line HCT15 Tissue samples taken from colorectal cancer patients Cell line: HCT15; Scan date: 27/02/2004; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012658 Cell line HCT15rehyb Tissue samples taken from colorectal cancer patients Cell line: HCT15rehyb; Scan date: 38080; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012659 Cell line HT29 Tissue samples taken from colorectal cancer patients Cell line: HT29; Scan date: 27/02/2004; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012660 Cell line HTB39 Tissue samples taken from colorectal cancer patients Cell line: HTB39; Scan date: 38080; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012661 Cell line LNCap Tissue samples taken from colorectal cancer patients Cell line: LNCap; Scan date: 27/02/2004; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012662 Cell line LOVO Tissue samples taken from colorectal cancer patients Cell line: LOVO; Scan date: 27/02/2004; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012663 Cell line MCF7 Tissue samples taken from colorectal cancer patients Cell line: MCF7; Scan date: 38080; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012664 Cell line NCM460 Tissue samples taken from colorectal cancer patients Cell line: NCM460; Scan date: 38080; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012665 Cell line SW1116 Tissue samples taken from colorectal cancer patients Cell line: SW1116; Scan date: 38263; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012666 Cell line SW620 Tissue samples taken from colorectal cancer patients Cell line: SW620; Scan date: 38080; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.
Excluded: Cell line Excluded GSM1012667 Cell line WiDr Tissue samples taken from colorectal cancer patients Cell line: WiDr; Scan date: 38263; Patient id: Cell line; Included in analysis: No cell line: Normalized exclusion flag detected: cell line.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.