These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
Polyp 00300BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 25/02/2004; patient id: 300; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012278
sample_title: Polyp 00300BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 25/02/2004; patient id: 300; included in analysis: Yes
Liver Metastasis 00450UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 450; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012279
sample_title: Liver Metastasis 00450UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 450; included in analysis: No
Liver Metastasis 00450UR1_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 450; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012280
sample_title: Liver Metastasis 00450UR1_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 450; included in analysis: No
Liver Metastasis 00450UR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 450; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012281
sample_title: Liver Metastasis 00450UR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 450; included in analysis: Yes
Liver Metastasis 00464UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37659; patient id: 464; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012282
sample_title: Liver Metastasis 00464UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37659; patient id: 464; included in analysis: Yes
Liver Metastasis 00485UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37659; patient id: 485; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012283
sample_title: Liver Metastasis 00485UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37659; patient id: 485; included in analysis: No
Liver Metastasis 00485UR1_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37664; patient id: 485; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012284
sample_title: Liver Metastasis 00485UR1_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37664; patient id: 485; included in analysis: No
Liver Metastasis 00485UR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 485; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012285
sample_title: Liver Metastasis 00485UR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 485; included in analysis: Yes
Primary Tumor 00620AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 620; included in analysis: Yes; sample date: 37687; age: 70; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 5; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012286
sample_title: Primary Tumor 00620AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 620; included in analysis: Yes; sample date: 37687; age: 70; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 5; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
Liver Metastasis 00823UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37659; patient id: 823; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012287
sample_title: Liver Metastasis 00823UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37659; patient id: 823; included in analysis: No
Liver Metastasis 00823UR1_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37664; patient id: 823; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012288
sample_title: Liver Metastasis 00823UR1_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37664; patient id: 823; included in analysis: No
Liver Metastasis 00823UR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 823; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012289
sample_title: Liver Metastasis 00823UR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 823; included in analysis: No
Liver Metastasis 00838UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37659; patient id: 838; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012290
sample_title: Liver Metastasis 00838UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37659; patient id: 838; included in analysis: No
Liver Metastasis 00838UR1_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37664; patient id: 838; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012291
sample_title: Liver Metastasis 00838UR1_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37664; patient id: 838; included in analysis: No
Liver Metastasis 00838UR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 838; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012292
sample_title: Liver Metastasis 00838UR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/02/2004; patient id: 838; included in analysis: Yes
Liver Metastasis 00852UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37659; patient id: 852; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012293
sample_title: Liver Metastasis 00852UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37659; patient id: 852; included in analysis: Yes
Normal Liver 00871KR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 38607; patient id: 871; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012294
sample_title: Normal Liver 00871KR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 38607; patient id: 871; included in analysis: No
Polyp 00888BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37659; patient id: 888; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012295
sample_title: Polyp 00888BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37659; patient id: 888; included in analysis: Yes
Liver Metastasis 00947UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37659; patient id: 947; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012296
sample_title: Liver Metastasis 00947UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37659; patient id: 947; included in analysis: Yes
Primary Tumor 00990AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 990; included in analysis: Yes; sample date: 37687; age: 78; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 82; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012297
sample_title: Primary Tumor 00990AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 990; included in analysis: Yes; sample date: 37687; age: 78; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 82; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Lung 01720MR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 22/07/2003; patient id: 1720; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012298
sample_title: Normal Lung 01720MR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 22/07/2003; patient id: 1720; included in analysis: No
Lung Metastasis 01720VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 1720; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012299
sample_title: Lung Metastasis 01720VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 1720; included in analysis: No
Polyp 01984BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37901; patient id: 1984; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012300
sample_title: Polyp 01984BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37901; patient id: 1984; included in analysis: Yes
Normal Lung 02050MR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 22/07/2003; patient id: 2050; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012301
sample_title: Normal Lung 02050MR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 22/07/2003; patient id: 2050; included in analysis: No
Lung Metastasis 02050VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 2050; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012302
sample_title: Lung Metastasis 02050VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 2050; included in analysis: No
Primary Tumor 02184AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 25/02/2004; patient id: 2184; included in analysis: Yes; sample date: 25/02/2004; age: 40; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 61; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012303
sample_title: Primary Tumor 02184AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 25/02/2004; patient id: 2184; included in analysis: Yes; sample date: 25/02/2004; age: 40; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 61; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Normal Colon 02184HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/11/2005; patient id: 2184; included in analysis: Yes; sample date: 25/02/2004; age: 40; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 61; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012304
sample_title: Normal Colon 02184HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/11/2005; patient id: 2184; included in analysis: Yes; sample date: 25/02/2004; age: 40; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 61; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor 02189AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 2189; included in analysis: Yes; sample date: 37687; age: 70; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 130; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012305
sample_title: Primary Tumor 02189AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 2189; included in analysis: Yes; sample date: 37687; age: 70; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 130; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Colon 02189HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/02/2006; patient id: 2189; included in analysis: Yes; sample date: 37687; age: 70; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 130; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012306
sample_title: Normal Colon 02189HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/02/2006; patient id: 2189; included in analysis: Yes; sample date: 37687; age: 70; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 130; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor 02308AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 2308; included in analysis: Yes; sample date: 37687; age: 63; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012307
sample_title: Primary Tumor 02308AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 2308; included in analysis: Yes; sample date: 37687; age: 63; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor 02500AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 2500; included in analysis: Yes; sample date: 37687; age: 81; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 52; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012308
sample_title: Primary Tumor 02500AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 2500; included in analysis: Yes; sample date: 37687; age: 81; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 52; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
Polyp 02663BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37659; patient id: 2663; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012309
sample_title: Polyp 02663BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37659; patient id: 2663; included in analysis: Yes
Primary Tumor 02679AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37901; patient id: 2679; included in analysis: Yes; sample date: 37901; age: 70; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 143; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012310
sample_title: Primary Tumor 02679AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37901; patient id: 2679; included in analysis: Yes; sample date: 37901; age: 70; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 143; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Polyp 02679BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37687; patient id: 2679; included in analysis: Yes; sample date: 37901; age: 70; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 143; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012311
sample_title: Polyp 02679BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37687; patient id: 2679; included in analysis: Yes; sample date: 37901; age: 70; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 143; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor 02779AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37901; patient id: 2779; included in analysis: Yes; sample date: 37901; age: 66; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 89; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012312
sample_title: Primary Tumor 02779AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37901; patient id: 2779; included in analysis: Yes; sample date: 37901; age: 66; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 89; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Polyp 02779BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37687; patient id: 2779; included in analysis: Yes; sample date: 37901; age: 66; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 89; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012313
sample_title: Polyp 02779BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37687; patient id: 2779; included in analysis: Yes; sample date: 37901; age: 66; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 89; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Primary Tumor 02815AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 25/02/2004; patient id: 2815; included in analysis: Yes; sample date: 25/02/2004; age: 55; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 72; recurrence: Yes; recurrence interval: 45; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012314
sample_title: Primary Tumor 02815AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 25/02/2004; patient id: 2815; included in analysis: Yes; sample date: 25/02/2004; age: 55; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 72; recurrence: Yes; recurrence interval: 45; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Normal Colon 02815HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 2815; included in analysis: Yes; sample date: 25/02/2004; age: 55; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 72; recurrence: Yes; recurrence interval: 45; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012315
sample_title: Normal Colon 02815HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 2815; included in analysis: Yes; sample date: 25/02/2004; age: 55; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 72; recurrence: Yes; recurrence interval: 45; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor 02832AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37901; patient id: 2832; included in analysis: Yes; sample date: 37901; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012316
sample_title: Primary Tumor 02832AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37901; patient id: 2832; included in analysis: Yes; sample date: 37901; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Primary Tumor 03023AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 3023; included in analysis: Yes; sample date: 37687; age: 49; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: Yes; recurrence interval: 14; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012317
sample_title: Primary Tumor 03023AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 3023; included in analysis: Yes; sample date: 37687; age: 49; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: Yes; recurrence interval: 14; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Normal Colon 03023HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38991; patient id: 3023; included in analysis: Yes; sample date: 37687; age: 49; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: Yes; recurrence interval: 14; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012318
sample_title: Normal Colon 03023HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38991; patient id: 3023; included in analysis: Yes; sample date: 37687; age: 49; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: Yes; recurrence interval: 14; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor 03156AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37901; patient id: 3156; included in analysis: Yes; sample date: 37901; age: 80; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 79; recurrence: Yes; recurrence interval: 68; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012319
sample_title: Primary Tumor 03156AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37901; patient id: 3156; included in analysis: Yes; sample date: 37901; age: 80; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 79; recurrence: Yes; recurrence interval: 68; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 03283AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 25/02/2004; patient id: 3283; included in analysis: Yes; sample date: 25/02/2004; age: 73; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 10; recurrence: Yes; recurrence interval: 0; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012320
sample_title: Primary Tumor 03283AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 25/02/2004; patient id: 3283; included in analysis: Yes; sample date: 25/02/2004; age: 73; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 10; recurrence: Yes; recurrence interval: 0; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Lung Metastasis 03358VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 3358; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012321
sample_title: Lung Metastasis 03358VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 3358; included in analysis: No
Primary Tumor 03393AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 3393; included in analysis: Yes; sample date: 37687; age: 68; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 153; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012322
sample_title: Primary Tumor 03393AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 3393; included in analysis: Yes; sample date: 37687; age: 68; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 153; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
Polyp 03393BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37687; patient id: 3393; included in analysis: Yes; sample date: 37687; age: 68; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 153; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012323
sample_title: Polyp 03393BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37687; patient id: 3393; included in analysis: Yes; sample date: 37687; age: 68; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 153; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
Primary Tumor 03401AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37901; patient id: 3401; included in analysis: Yes; sample date: 37901; age: 75; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012324
sample_title: Primary Tumor 03401AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37901; patient id: 3401; included in analysis: Yes; sample date: 37901; age: 75; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor 03465AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38607; patient id: 3465; included in analysis: Yes; sample date: 38607; age: 53; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 114; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012325
sample_title: Primary Tumor 03465AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38607; patient id: 3465; included in analysis: Yes; sample date: 38607; age: 53; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 114; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Descending colon
Primary Tumor 03519AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 25/02/2004; patient id: 3519; included in analysis: Yes; sample date: 25/02/2004; age: 71; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 13; recurrence: Yes; recurrence interval: 7; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012326
sample_title: Primary Tumor 03519AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 25/02/2004; patient id: 3519; included in analysis: Yes; sample date: 25/02/2004; age: 71; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 13; recurrence: Yes; recurrence interval: 7; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon 03519HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 3519; included in analysis: Yes; sample date: 25/02/2004; age: 71; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 13; recurrence: Yes; recurrence interval: 7; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012327
sample_title: Normal Colon 03519HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 3519; included in analysis: Yes; sample date: 25/02/2004; age: 71; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 13; recurrence: Yes; recurrence interval: 7; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor 03531AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 25/02/2004; patient id: 3531; included in analysis: Yes; sample date: 25/02/2004; age: 42; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 10; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012328
sample_title: Primary Tumor 03531AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 25/02/2004; patient id: 3531; included in analysis: Yes; sample date: 25/02/2004; age: 42; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 10; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Transverse colon
Polyp 03598BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38021; patient id: 3598; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012329
sample_title: Polyp 03598BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38021; patient id: 3598; included in analysis: Yes
Normal Colon 03598HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 3598; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012330
sample_title: Normal Colon 03598HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 3598; included in analysis: Yes
Primary Tumor 03637AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38021; patient id: 3637; included in analysis: Yes; sample date: 38021; age: 77; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 35; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012331
sample_title: Primary Tumor 03637AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38021; patient id: 3637; included in analysis: Yes; sample date: 38021; age: 77; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 35; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Polyp 03637BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38021; patient id: 3637; included in analysis: Yes; sample date: 38021; age: 77; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 35; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012332
sample_title: Polyp 03637BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38021; patient id: 3637; included in analysis: Yes; sample date: 38021; age: 77; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 35; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Colon 03637HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38021; patient id: 3637; included in analysis: Yes; sample date: 38021; age: 77; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 35; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012333
sample_title: Normal Colon 03637HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38021; patient id: 3637; included in analysis: Yes; sample date: 38021; age: 77; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 35; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor 03657AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38021; patient id: 3657; included in analysis: Yes; sample date: 38021; age: 41; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012334
sample_title: Primary Tumor 03657AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38021; patient id: 3657; included in analysis: Yes; sample date: 38021; age: 41; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Normal Colon 03657HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 3657; included in analysis: Yes; sample date: 38021; age: 41; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012335
sample_title: Normal Colon 03657HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 3657; included in analysis: Yes; sample date: 38021; age: 41; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Primary Tumor 03706AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38021; patient id: 3706; included in analysis: Yes; sample date: 38021; age: 61; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 37; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012336
sample_title: Primary Tumor 03706AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38021; patient id: 3706; included in analysis: Yes; sample date: 38021; age: 61; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 37; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Normal Colon 03706HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38991; patient id: 3706; included in analysis: Yes; sample date: 38021; age: 61; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 37; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012337
sample_title: Normal Colon 03706HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38991; patient id: 3706; included in analysis: Yes; sample date: 38021; age: 61; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 37; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor 03752AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37687; patient id: 3752; included in analysis: Yes; sample date: 37687; age: 54; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 136; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012338
sample_title: Primary Tumor 03752AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37687; patient id: 3752; included in analysis: Yes; sample date: 37687; age: 54; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 136; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor 03753AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37901; patient id: 3753; included in analysis: Yes; sample date: 37901; age: 75; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 12; recurrence: Yes; recurrence interval: 12; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012339
sample_title: Primary Tumor 03753AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37901; patient id: 3753; included in analysis: Yes; sample date: 37901; age: 75; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 12; recurrence: Yes; recurrence interval: 12; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
Normal Colon 03753HR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38607; patient id: 3753; included in analysis: Yes; sample date: 37901; age: 75; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 12; recurrence: Yes; recurrence interval: 12; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012340
sample_title: Normal Colon 03753HR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38607; patient id: 3753; included in analysis: Yes; sample date: 37901; age: 75; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 12; recurrence: Yes; recurrence interval: 12; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
Primary Tumor 03777AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38021; patient id: 3777; included in analysis: Yes; sample date: 38021; age: 69; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 28; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012341
sample_title: Primary Tumor 03777AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38021; patient id: 3777; included in analysis: Yes; sample date: 38021; age: 69; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 28; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Colon 03777hr3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/05/2006; patient id: 3777; included in analysis: Yes; sample date: 38021; age: 69; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 28; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012342
sample_title: Normal Colon 03777hr3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/05/2006; patient id: 3777; included in analysis: Yes; sample date: 38021; age: 69; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 28; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Lung Metastasis 03820VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 3820; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012343
sample_title: Lung Metastasis 03820VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 3820; included in analysis: Yes
Primary Tumor 03862AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38021; patient id: 3862; included in analysis: Yes; sample date: 38021; age: 74; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 76; recurrence: Yes; recurrence interval: 52; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012344
sample_title: Primary Tumor 03862AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38021; patient id: 3862; included in analysis: Yes; sample date: 38021; age: 74; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 76; recurrence: Yes; recurrence interval: 52; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Transverse colon
Normal Colon 03862HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 3862; included in analysis: Yes; sample date: 38021; age: 74; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 76; recurrence: Yes; recurrence interval: 52; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012345
sample_title: Normal Colon 03862HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 3862; included in analysis: Yes; sample date: 38021; age: 74; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 76; recurrence: Yes; recurrence interval: 52; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Transverse colon
Primary Tumor 04176AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4176; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: F; t: 4; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 0; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012346
sample_title: Primary Tumor 04176AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4176; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: F; t: 4; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 0; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
Normal Colon 04176HR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38607; patient id: 4176; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: F; t: 4; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 0; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012347
sample_title: Normal Colon 04176HR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38607; patient id: 4176; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: F; t: 4; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 0; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
Normal Lung 04222MR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 22/07/2003; patient id: 4222; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012348
sample_title: Normal Lung 04222MR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 22/07/2003; patient id: 4222; included in analysis: No
Lung Metastasis 04222VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 4222; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012349
sample_title: Lung Metastasis 04222VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 4222; included in analysis: Yes
Primary Tumor 04276AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4276; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 107; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012350
sample_title: Primary Tumor 04276AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4276; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 107; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon 04276HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 4276; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 107; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012351
sample_title: Normal Colon 04276HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 4276; included in analysis: Yes; sample date: 22/04/2004; age: 58; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 107; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor 04388AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4388; included in analysis: Yes; sample date: 22/04/2004; age: 68; gender: F; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 56; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012352
sample_title: Primary Tumor 04388AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4388; included in analysis: Yes; sample date: 22/04/2004; age: 68; gender: F; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 56; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Polyp 04449BR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38296; patient id: 4449; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012353
sample_title: Polyp 04449BR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38296; patient id: 4449; included in analysis: Yes
Primary Tumor 04494AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38296; patient id: 4494; included in analysis: Yes; sample date: 38296; age: 65; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 4; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012354
sample_title: Primary Tumor 04494AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38296; patient id: 4494; included in analysis: Yes; sample date: 38296; age: 65; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 4; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon 04494HR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 4494; included in analysis: Yes; sample date: 38296; age: 65; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 4; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012355
sample_title: Normal Colon 04494HR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 4494; included in analysis: Yes; sample date: 38296; age: 65; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 4; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 04549AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38296; patient id: 4549; included in analysis: Yes; sample date: 38296; age: 60; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 6; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012356
sample_title: Primary Tumor 04549AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38296; patient id: 4549; included in analysis: Yes; sample date: 38296; age: 60; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 6; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Normal Colon 04549HR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/03/2006; patient id: 4549; included in analysis: Yes; sample date: 38296; age: 60; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 6; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012357
sample_title: Normal Colon 04549HR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/03/2006; patient id: 4549; included in analysis: Yes; sample date: 38296; age: 60; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 6; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor 04800AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4800; included in analysis: Yes; sample date: 22/04/2004; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: Yes; recurrence interval: 8; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012358
sample_title: Primary Tumor 04800AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 4800; included in analysis: Yes; sample date: 22/04/2004; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: Yes; recurrence interval: 8; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon 04800hr4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/05/2006; patient id: 4800; included in analysis: Yes; sample date: 22/04/2004; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: Yes; recurrence interval: 8; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012359
sample_title: Normal Colon 04800hr4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/05/2006; patient id: 4800; included in analysis: Yes; sample date: 22/04/2004; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: Yes; recurrence interval: 8; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Polyp 04809BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37901; patient id: 4809; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012360
sample_title: Polyp 04809BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37901; patient id: 4809; included in analysis: Yes
Primary Tumor 05025AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38296; patient id: 5025; included in analysis: Yes; sample date: 38296; age: 67; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 38; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012361
sample_title: Primary Tumor 05025AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38296; patient id: 5025; included in analysis: Yes; sample date: 38296; age: 67; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 38; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Polyp 05192BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37659; patient id: 5192; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012362
sample_title: Polyp 05192BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37659; patient id: 5192; included in analysis: Yes
Primary Tumor 05334AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 5334; included in analysis: Yes; sample date: 22/04/2004; age: 73; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 145; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012363
sample_title: Primary Tumor 05334AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 5334; included in analysis: Yes; sample date: 22/04/2004; age: 73; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 145; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Cecum
Primary Tumor 05424AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 5424; included in analysis: Yes; sample date: 22/04/2004; age: 55; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 25; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012364
sample_title: Primary Tumor 05424AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 5424; included in analysis: Yes; sample date: 22/04/2004; age: 55; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 25; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Polyp 05479BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37659; patient id: 5479; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012365
sample_title: Polyp 05479BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37659; patient id: 5479; included in analysis: Yes
Primary Tumor 05629AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/04/2004; patient id: 5629; included in analysis: Yes; sample date: 22/04/2004; age: 69; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 100; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012366
sample_title: Primary Tumor 05629AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/04/2004; patient id: 5629; included in analysis: Yes; sample date: 22/04/2004; age: 69; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 100; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Primary Tumor 05708AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5708; included in analysis: Yes; sample date: 19/05/2004; age: 76; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 85; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012367
sample_title: Primary Tumor 05708AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5708; included in analysis: Yes; sample date: 19/05/2004; age: 76; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 85; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 05786AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5786; included in analysis: Yes; sample date: 19/05/2004; age: 32; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012368
sample_title: Primary Tumor 05786AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5786; included in analysis: Yes; sample date: 19/05/2004; age: 32; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
Normal Colon 05786hr3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/05/2006; patient id: 5786; included in analysis: Yes; sample date: 19/05/2004; age: 32; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012369
sample_title: Normal Colon 05786hr3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/05/2006; patient id: 5786; included in analysis: Yes; sample date: 19/05/2004; age: 32; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 16; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
Primary Tumor 05839AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5839; included in analysis: Yes; sample date: 19/05/2004; age: 70; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 25; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012370
sample_title: Primary Tumor 05839AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5839; included in analysis: Yes; sample date: 19/05/2004; age: 70; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 25; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Cecum
Primary Tumor 05885AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5885; included in analysis: Yes; sample date: 19/05/2004; age: 81; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 81; recurrence: Yes; recurrence interval: 45; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012371
sample_title: Primary Tumor 05885AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/05/2004; patient id: 5885; included in analysis: Yes; sample date: 19/05/2004; age: 81; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 81; recurrence: Yes; recurrence interval: 45; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Lung Metastasis 05969VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 5969; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012372
sample_title: Lung Metastasis 05969VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 5969; included in analysis: No
Primary Tumor 06051AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/05/2004; patient id: 6051; included in analysis: Yes; sample date: 19/05/2004; age: 70; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 60; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012373
sample_title: Primary Tumor 06051AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/05/2004; patient id: 6051; included in analysis: Yes; sample date: 19/05/2004; age: 70; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 60; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Cecum
Primary Tumor 06220AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/05/2004; patient id: 6220; included in analysis: Yes; sample date: 19/05/2004; age: 56; gender: M; t: 4; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 140; recurrence: Yes; recurrence interval: 15; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012374
sample_title: Primary Tumor 06220AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/05/2004; patient id: 6220; included in analysis: Yes; sample date: 19/05/2004; age: 56; gender: M; t: 4; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 140; recurrence: Yes; recurrence interval: 15; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
Primary Tumor 06265AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38023; patient id: 6265; included in analysis: Yes; sample date: 38023; age: 70; gender: F; t: 4; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 72; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012375
sample_title: Primary Tumor 06265AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38023; patient id: 6265; included in analysis: Yes; sample date: 38023; age: 70; gender: F; t: 4; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 72; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Sigmoid colon
Primary Tumor 06314AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38083; patient id: 6314; included in analysis: Yes; sample date: 38083; age: 68; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 125; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012376
sample_title: Primary Tumor 06314AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38083; patient id: 6314; included in analysis: Yes; sample date: 38083; age: 68; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 125; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
Lung Metastasis 06432VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 6432; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012377
sample_title: Lung Metastasis 06432VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 6432; included in analysis: No
Polyp 06572BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37901; patient id: 6572; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012378
sample_title: Polyp 06572BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37901; patient id: 6572; included in analysis: Yes
Primary Tumor 06657AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38266; patient id: 6657; included in analysis: Yes; sample date: 38266; age: 32; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: Yes; recurrence interval: 66; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012379
sample_title: Primary Tumor 06657AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38266; patient id: 6657; included in analysis: Yes; sample date: 38266; age: 32; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: Yes; recurrence interval: 66; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon 06657HR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38607; patient id: 6657; included in analysis: Yes; sample date: 38266; age: 32; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: Yes; recurrence interval: 66; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012380
sample_title: Normal Colon 06657HR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38607; patient id: 6657; included in analysis: Yes; sample date: 38266; age: 32; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 137; recurrence: Yes; recurrence interval: 66; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 06706AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38266; patient id: 6706; included in analysis: Yes; sample date: 38266; age: 63; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 139; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012381
sample_title: Primary Tumor 06706AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38266; patient id: 6706; included in analysis: Yes; sample date: 38266; age: 63; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 139; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Normal Lung 06764MR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 38607; patient id: 6764; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012382
sample_title: Normal Lung 06764MR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 38607; patient id: 6764; included in analysis: No
Lung Metastasis 06764VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 6764; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012383
sample_title: Lung Metastasis 06764VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 6764; included in analysis: Yes
Primary Tumor 06840AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38266; patient id: 6840; included in analysis: Yes; sample date: 38266; age: 64; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: Yes; recurrence interval: 2; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012384
sample_title: Primary Tumor 06840AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38266; patient id: 6840; included in analysis: Yes; sample date: 38266; age: 64; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: Yes; recurrence interval: 2; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
Primary Tumor 06997AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38607; patient id: 6997; included in analysis: Yes; sample date: 38607; age: 71; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 133; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012385
sample_title: Primary Tumor 06997AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38607; patient id: 6997; included in analysis: Yes; sample date: 38607; age: 71; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 133; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Descending colon
Primary Tumor 07061AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38266; patient id: 7061; included in analysis: Yes; sample date: 38266; age: 62; gender: F; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 123; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012386
sample_title: Primary Tumor 07061AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38266; patient id: 7061; included in analysis: Yes; sample date: 38266; age: 62; gender: F; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 123; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 07145AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38266; patient id: 7145; included in analysis: Yes; sample date: 38266; age: 76; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 95; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012387
sample_title: Primary Tumor 07145AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38266; patient id: 7145; included in analysis: Yes; sample date: 38266; age: 76; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 95; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Polyp 07392BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38266; patient id: 7392; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012388
sample_title: Polyp 07392BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38266; patient id: 7392; included in analysis: Yes
Primary Tumor 07427AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38266; patient id: 7427; included in analysis: Yes; sample date: 38266; age: 48; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 51; recurrence: Yes; recurrence interval: 19; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012389
sample_title: Primary Tumor 07427AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38266; patient id: 7427; included in analysis: Yes; sample date: 38266; age: 48; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 51; recurrence: Yes; recurrence interval: 19; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
Lung Metastasis 07445VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 7445; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012390
sample_title: Lung Metastasis 07445VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 7445; included in analysis: No
Primary Tumor 07576AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38083; patient id: 7576; included in analysis: Yes; sample date: 38083; age: 69; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 58; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012391
sample_title: Primary Tumor 07576AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38083; patient id: 7576; included in analysis: Yes; sample date: 38083; age: 69; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 58; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor 07632AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38083; patient id: 7632; included in analysis: Yes; sample date: 38083; age: 59; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 59; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012392
sample_title: Primary Tumor 07632AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38083; patient id: 7632; included in analysis: Yes; sample date: 38083; age: 59; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 59; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Primary Tumor 07662AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38083; patient id: 7662; included in analysis: Yes; sample date: 38083; age: 71; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 45; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012393
sample_title: Primary Tumor 07662AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38083; patient id: 7662; included in analysis: Yes; sample date: 38083; age: 71; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 45; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Polyp 07677BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37901; patient id: 7677; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012394
sample_title: Polyp 07677BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37901; patient id: 7677; included in analysis: Yes
Primary Tumor 07721AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38083; patient id: 7721; included in analysis: Yes; sample date: 38083; age: 77; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 99; recurrence: Yes; recurrence interval: 11; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012395
sample_title: Primary Tumor 07721AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38083; patient id: 7721; included in analysis: Yes; sample date: 38083; age: 77; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 99; recurrence: Yes; recurrence interval: 11; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor 07925AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 7925; included in analysis: Yes; sample date: 38329; age: 74; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 17; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012396
sample_title: Primary Tumor 07925AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 7925; included in analysis: Yes; sample date: 38329; age: 74; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 17; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Transverse colon
Primary Tumor 07930AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 7930; included in analysis: Yes; sample date: 38329; age: 48; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 13; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012397
sample_title: Primary Tumor 07930AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 7930; included in analysis: Yes; sample date: 38329; age: 48; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 13; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 07973AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 7973; included in analysis: Yes; sample date: 38329; age: 53; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 119; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012398
sample_title: Primary Tumor 07973AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 7973; included in analysis: Yes; sample date: 38329; age: 53; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 119; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor 08018AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 8018; included in analysis: Yes; sample date: 38329; age: 76; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 11; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012399
sample_title: Primary Tumor 08018AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 8018; included in analysis: Yes; sample date: 38329; age: 76; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 11; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor 08029AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 8029; included in analysis: Yes; sample date: 38329; age: 70; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 47; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012400
sample_title: Primary Tumor 08029AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 8029; included in analysis: Yes; sample date: 38329; age: 70; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 47; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor 08061AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 8061; included in analysis: Yes; sample date: 38329; age: 35; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 119; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012401
sample_title: Primary Tumor 08061AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 8061; included in analysis: Yes; sample date: 38329; age: 35; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 119; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Polyp 08070BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37901; patient id: 8070; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012402
sample_title: Polyp 08070BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37901; patient id: 8070; included in analysis: Yes
Normal Lung 08088MR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 38991; patient id: 8088; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012403
sample_title: Normal Lung 08088MR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 38991; patient id: 8088; included in analysis: No
Lung Metastasis 08088VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 8088; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012404
sample_title: Lung Metastasis 08088VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 8088; included in analysis: Yes
Primary Tumor 08168AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38329; patient id: 8168; included in analysis: Yes; sample date: 38329; age: 73; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 125; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012405
sample_title: Primary Tumor 08168AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38329; patient id: 8168; included in analysis: Yes; sample date: 38329; age: 73; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 125; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Sigmoid colon
Polyp 08568BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37901; patient id: 8568; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012406
sample_title: Polyp 08568BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37901; patient id: 8568; included in analysis: Yes
Primary Tumor 08792AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38118; patient id: 8792; included in analysis: Yes; sample date: 38118; age: 65; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 80; recurrence: Yes; recurrence interval: 27; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012407
sample_title: Primary Tumor 08792AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38118; patient id: 8792; included in analysis: Yes; sample date: 38118; age: 65; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 80; recurrence: Yes; recurrence interval: 27; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor 09054AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38118; patient id: 9054; included in analysis: Yes; sample date: 38118; age: 78; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 44; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012408
sample_title: Primary Tumor 09054AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38118; patient id: 9054; included in analysis: Yes; sample date: 38118; age: 78; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 44; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor 09077AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38058; patient id: 9077; included in analysis: Yes; sample date: 38058; age: 79; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 108; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012409
sample_title: Primary Tumor 09077AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38058; patient id: 9077; included in analysis: Yes; sample date: 38058; age: 79; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 108; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 09185AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38058; patient id: 9185; included in analysis: Yes; sample date: 38058; age: 74; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 119; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012410
sample_title: Primary Tumor 09185AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38058; patient id: 9185; included in analysis: Yes; sample date: 38058; age: 74; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 119; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Transverse colon
Primary Tumor 09297AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38118; patient id: 9297; included in analysis: Yes; sample date: 38118; age: 67; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 32; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012411
sample_title: Primary Tumor 09297AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38118; patient id: 9297; included in analysis: Yes; sample date: 38118; age: 67; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 32; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 09343AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38118; patient id: 9343; included in analysis: Yes; sample date: 38118; age: 61; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012412
sample_title: Primary Tumor 09343AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38118; patient id: 9343; included in analysis: Yes; sample date: 38118; age: 61; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor 09394AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38118; patient id: 9394; included in analysis: Yes; sample date: 38118; age: 51; gender: M; t: 1; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 111; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012413
sample_title: Primary Tumor 09394AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38118; patient id: 9394; included in analysis: Yes; sample date: 38118; age: 51; gender: M; t: 1; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 111; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 09420AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38118; patient id: 9420; included in analysis: Yes; sample date: 38118; age: 52; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 125; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012414
sample_title: Primary Tumor 09420AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38118; patient id: 9420; included in analysis: Yes; sample date: 38118; age: 52; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 125; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
Polyp 09446BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38058; patient id: 9446; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012415
sample_title: Polyp 09446BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38058; patient id: 9446; included in analysis: Yes
Primary Tumor 09468AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38058; patient id: 9468; included in analysis: Yes; sample date: 38058; age: 38; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 8; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012416
sample_title: Primary Tumor 09468AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38058; patient id: 9468; included in analysis: Yes; sample date: 38058; age: 38; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 8; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Ascending colon
Polyp 09518BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/12/2005; patient id: 9518; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012417
sample_title: Polyp 09518BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/12/2005; patient id: 9518; included in analysis: Yes
Liver Metastasis 09518UR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 22/03/2005; patient id: 9518; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012418
sample_title: Liver Metastasis 09518UR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 22/03/2005; patient id: 9518; included in analysis: Yes
Primary Tumor 09728AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 24/11/2004; patient id: 9728; included in analysis: Yes; sample date: 24/11/2004; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 110; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012419
sample_title: Primary Tumor 09728AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 24/11/2004; patient id: 9728; included in analysis: Yes; sample date: 24/11/2004; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 110; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Cecum
Polyp 09728BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 24/11/2004; patient id: 9728; included in analysis: Yes; sample date: 24/11/2004; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 110; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012420
sample_title: Polyp 09728BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 24/11/2004; patient id: 9728; included in analysis: Yes; sample date: 24/11/2004; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 110; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Cecum
Primary Tumor 09811AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 24/11/2004; patient id: 9811; included in analysis: Yes; sample date: 24/11/2004; age: 84; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 62; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012421
sample_title: Primary Tumor 09811AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 24/11/2004; patient id: 9811; included in analysis: Yes; sample date: 24/11/2004; age: 84; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 62; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Polyp 10078BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 37659; patient id: 10078; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012422
sample_title: Polyp 10078BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 37659; patient id: 10078; included in analysis: Yes
Primary Tumor 10194AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 24/11/2004; patient id: 10194; included in analysis: Yes; sample date: 24/11/2004; age: 60; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 36; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012423
sample_title: Primary Tumor 10194AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 24/11/2004; patient id: 10194; included in analysis: Yes; sample date: 24/11/2004; age: 60; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 36; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor 10216AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: 10216; included in analysis: Yes; sample date: 38598; age: 75; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 78; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012424
sample_title: Primary Tumor 10216AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: 10216; included in analysis: Yes; sample date: 38598; age: 75; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 78; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Lung Metastasis 10258VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 10258; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012425
sample_title: Lung Metastasis 10258VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 10258; included in analysis: Yes
Primary Tumor 10264AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: 10264; included in analysis: Yes; sample date: 38598; age: 78; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 54; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012426
sample_title: Primary Tumor 10264AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: 10264; included in analysis: Yes; sample date: 38598; age: 78; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 54; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Ascending colon
Primary Tumor 10368AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: 10368; included in analysis: Yes; sample date: 38598; age: 55; gender: M; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 19; recurrence: NA; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012427
sample_title: Primary Tumor 10368AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: 10368; included in analysis: Yes; sample date: 38598; age: 55; gender: M; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 19; recurrence: NA; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor 10512AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: 10512; included in analysis: Yes; sample date: 38598; age: 44; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 47; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012428
sample_title: Primary Tumor 10512AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: 10512; included in analysis: Yes; sample date: 38598; age: 44; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 47; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor 10630AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: 10630; included in analysis: Yes; sample date: 38598; age: 59; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 106; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012429
sample_title: Primary Tumor 10630AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: 10630; included in analysis: Yes; sample date: 38598; age: 59; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 106; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
Lung Metastasis 11185VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 11185; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012430
sample_title: Lung Metastasis 11185VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 11185; included in analysis: Yes
Lung Metastasis 11190VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 11190; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012431
sample_title: Lung Metastasis 11190VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 11190; included in analysis: No
Primary Tumor 11325AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 11325; included in analysis: Yes; sample date: 38445; age: 75; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 109; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012432
sample_title: Primary Tumor 11325AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 11325; included in analysis: Yes; sample date: 38445; age: 75; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 109; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Rectosigmoid
Lung Metastasis 11670VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 11670; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012433
sample_title: Lung Metastasis 11670VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 11670; included in analysis: Yes
Primary Tumor 11718AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 11718; included in analysis: Yes; sample date: 38445; age: 61; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012434
sample_title: Primary Tumor 11718AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 11718; included in analysis: Yes; sample date: 38445; age: 61; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Normal Lung 12051MR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 22/07/2003; patient id: 12051; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012435
sample_title: Normal Lung 12051MR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 22/07/2003; patient id: 12051; included in analysis: No
Lung Metastasis 12051VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 12051; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012436
sample_title: Lung Metastasis 12051VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 12051; included in analysis: No
Primary Tumor 12237AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 12237; included in analysis: Yes; sample date: 38445; age: 63; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 111; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012437
sample_title: Primary Tumor 12237AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 12237; included in analysis: Yes; sample date: 38445; age: 63; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 111; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Lung Metastasis 12285VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 12285; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012438
sample_title: Lung Metastasis 12285VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 12285; included in analysis: Yes
Primary Tumor 12292AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 12292; included in analysis: Yes; sample date: 38445; age: 62; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 11; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012439
sample_title: Primary Tumor 12292AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 12292; included in analysis: Yes; sample date: 38445; age: 62; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 11; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
Primary Tumor 12297AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 12297; included in analysis: Yes; sample date: 38445; age: 54; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 95; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Splenic Flexure
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012440
sample_title: Primary Tumor 12297AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 12297; included in analysis: Yes; sample date: 38445; age: 54; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 95; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Splenic Flexure
Primary Tumor 12355AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 12355; included in analysis: Yes; sample date: 38445; age: 72; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 63; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012441
sample_title: Primary Tumor 12355AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 12355; included in analysis: Yes; sample date: 38445; age: 72; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 63; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Rectosigmoid
Primary Tumor 12847AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 12847; included in analysis: Yes; sample date: 38445; age: 69; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012442
sample_title: Primary Tumor 12847AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 12847; included in analysis: Yes; sample date: 38445; age: 69; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
Normal Lung 13279MR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Lung; scan date: 22/07/2003; patient id: 13279; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012443
sample_title: Normal Lung 13279MR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Lung; scan date: 22/07/2003; patient id: 13279; included in analysis: No
Lung Metastasis 13279VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 13279; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012444
sample_title: Lung Metastasis 13279VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 13279; included in analysis: No
Primary Tumor 13321AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38445; patient id: 13321; included in analysis: Yes; sample date: 38445; age: 59; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 10; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012445
sample_title: Primary Tumor 13321AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38445; patient id: 13321; included in analysis: Yes; sample date: 38445; age: 59; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 10; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Descending colon
Primary Tumor 13357AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/03/2005; patient id: 13357; included in analysis: Yes; sample date: 22/03/2005; age: 63; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012446
sample_title: Primary Tumor 13357AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/03/2005; patient id: 13357; included in analysis: Yes; sample date: 22/03/2005; age: 63; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
Primary Tumor 14475AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/03/2005; patient id: 14475; included in analysis: Yes; sample date: 22/03/2005; age: 62; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 15; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012447
sample_title: Primary Tumor 14475AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/03/2005; patient id: 14475; included in analysis: Yes; sample date: 22/03/2005; age: 62; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 15; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Ascending colon
Lung Metastasis 14756VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 14756; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012448
sample_title: Lung Metastasis 14756VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 14756; included in analysis: No
Lung Metastasis 14756VR1_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 37664; patient id: 14756; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012449
sample_title: Lung Metastasis 14756VR1_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 37664; patient id: 14756; included in analysis: No
Lung Metastasis 14938VR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 14938; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012450
sample_title: Lung Metastasis 14938VR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Lung Metastasis; scan date: 22/07/2003; patient id: 14938; included in analysis: Yes
Primary Tumor 15329AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/12/2005; patient id: 15329; included in analysis: Yes; sample date: 14/12/2005; age: 79; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 39; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012451
sample_title: Primary Tumor 15329AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/12/2005; patient id: 15329; included in analysis: Yes; sample date: 14/12/2005; age: 79; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 39; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Cecum
Liver Metastasis 79744UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38630; patient id: 79744; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012452
sample_title: Liver Metastasis 79744UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38630; patient id: 79744; included in analysis: No
Liver Metastasis 80649UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38630; patient id: 80649; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012453
sample_title: Liver Metastasis 80649UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38630; patient id: 80649; included in analysis: Yes
Polyp A0022BR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 20/05/2005; patient id: A0022; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012454
sample_title: Polyp A0022BR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 20/05/2005; patient id: A0022; included in analysis: Yes
Primary Tumor A0319AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38630; patient id: A0319; included in analysis: Yes; sample date: 38630; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012455
sample_title: Primary Tumor A0319AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38630; patient id: A0319; included in analysis: Yes; sample date: 38630; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor A0702AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38630; patient id: A0702; included in analysis: Yes; sample date: 38630; age: 58; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 67; recurrence: NA; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012456
sample_title: Primary Tumor A0702AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38630; patient id: A0702; included in analysis: Yes; sample date: 38630; age: 58; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 67; recurrence: NA; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Descending colon
Liver Metastasis A1288UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38661; patient id: A1288; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012457
sample_title: Liver Metastasis A1288UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38661; patient id: A1288; included in analysis: Yes
Polyp A1327BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38513; patient id: A1327; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012458
sample_title: Polyp A1327BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38513; patient id: A1327; included in analysis: No
Normal Colon A1327HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/11/2005; patient id: A1327; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012459
sample_title: Normal Colon A1327HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/11/2005; patient id: A1327; included in analysis: Yes
Liver Metastasis A1423UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38661; patient id: A1423; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012460
sample_title: Liver Metastasis A1423UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38661; patient id: A1423; included in analysis: No
Primary Tumor A1516AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 20/05/2005; patient id: A1516; included in analysis: Yes; sample date: 20/05/2005; age: 78; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 40; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012461
sample_title: Primary Tumor A1516AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 20/05/2005; patient id: A1516; included in analysis: Yes; sample date: 20/05/2005; age: 78; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 40; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
Primary Tumor A1644AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38661; patient id: A1644; included in analysis: Yes; sample date: 38661; age: 37; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 26; recurrence: Yes; recurrence interval: 1; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012462
sample_title: Primary Tumor A1644AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38661; patient id: A1644; included in analysis: Yes; sample date: 38661; age: 37; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 26; recurrence: Yes; recurrence interval: 1; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Sigmoid colon
Primary Tumor A1716AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/06/2005; patient id: A1716; included in analysis: Yes; sample date: 14/06/2005; age: 68; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012463
sample_title: Primary Tumor A1716AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/06/2005; patient id: A1716; included in analysis: Yes; sample date: 14/06/2005; age: 68; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Polyp A1853BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38513; patient id: A1853; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012464
sample_title: Polyp A1853BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38513; patient id: A1853; included in analysis: Yes
Normal Colon A1853HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/11/2005; patient id: A1853; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012465
sample_title: Normal Colon A1853HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/11/2005; patient id: A1853; included in analysis: Yes
Normal Colon a2191hr
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/05/2006; patient id: A2191; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012466
sample_title: Normal Colon a2191hr
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/05/2006; patient id: A2191; included in analysis: Yes
Primary Tumor A2226AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/06/2005; patient id: A2226; included in analysis: Yes; sample date: 14/06/2005; age: 76; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 78; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012467
sample_title: Primary Tumor A2226AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/06/2005; patient id: A2226; included in analysis: Yes; sample date: 14/06/2005; age: 76; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 78; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Transverse colon
Primary Tumor A2367AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/06/2005; patient id: A2367; included in analysis: Yes; sample date: 14/06/2005; age: 70; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 86; recurrence: Yes; recurrence interval: 16; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012468
sample_title: Primary Tumor A2367AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/06/2005; patient id: A2367; included in analysis: Yes; sample date: 14/06/2005; age: 70; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 86; recurrence: Yes; recurrence interval: 16; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor A2434AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/12/2005; patient id: A2434; included in analysis: Yes; sample date: 14/12/2005; age: 69; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 37; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012469
sample_title: Primary Tumor A2434AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/12/2005; patient id: A2434; included in analysis: Yes; sample date: 14/12/2005; age: 69; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 37; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Liver Metastasis A2561UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 20/05/2005; patient id: A2561; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012470
sample_title: Liver Metastasis A2561UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 20/05/2005; patient id: A2561; included in analysis: Yes
Primary Tumor A2715AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38513; patient id: A2715; included in analysis: Yes; sample date: 38513; age: 31; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 41; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012471
sample_title: Primary Tumor A2715AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38513; patient id: A2715; included in analysis: Yes; sample date: 38513; age: 31; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 41; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Rectum
Liver Metastasis A3203UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 20/05/2005; patient id: A3203; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012472
sample_title: Liver Metastasis A3203UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 20/05/2005; patient id: A3203; included in analysis: Yes
Polyp A3443BR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/06/2005; patient id: A3443; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012473
sample_title: Polyp A3443BR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/06/2005; patient id: A3443; included in analysis: Yes
Primary Tumor A3536AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/06/2005; patient id: A3536; included in analysis: Yes; sample date: 14/06/2005; age: 43; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 66; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012474
sample_title: Primary Tumor A3536AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/06/2005; patient id: A3536; included in analysis: Yes; sample date: 14/06/2005; age: 43; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 66; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: NA; anatomic location: Descending colon
Liver Metastasis A3622UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 14/06/2005; patient id: A3622; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012475
sample_title: Liver Metastasis A3622UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 14/06/2005; patient id: A3622; included in analysis: Yes
Liver Metastasis A3684UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38630; patient id: A3684; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012476
sample_title: Liver Metastasis A3684UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38630; patient id: A3684; included in analysis: No
Polyp A4177BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38513; patient id: A4177; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012477
sample_title: Polyp A4177BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38513; patient id: A4177; included in analysis: Yes
Primary Tumor A4248AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38661; patient id: A4248; included in analysis: Yes; sample date: 38661; age: 25; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 32; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012478
sample_title: Primary Tumor A4248AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38661; patient id: A4248; included in analysis: Yes; sample date: 38661; age: 25; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 32; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Descending colon
Primary Tumor A4342AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38630; patient id: A4342; included in analysis: Yes; sample date: 38630; age: 40; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 60; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012479
sample_title: Primary Tumor A4342AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38630; patient id: A4342; included in analysis: Yes; sample date: 38630; age: 40; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 60; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Cecum
Liver Metastasis A4396UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38661; patient id: A4396; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012480
sample_title: Liver Metastasis A4396UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38661; patient id: A4396; included in analysis: Yes
Polyp A4410BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38513; patient id: A4410; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012481
sample_title: Polyp A4410BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38513; patient id: A4410; included in analysis: No
Polyp A4410BR3_ren
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38513; patient id: A4410; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012482
sample_title: Polyp A4410BR3_ren
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38513; patient id: A4410; included in analysis: Yes
Normal Colon A4410HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/11/2005; patient id: A4410; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012483
sample_title: Normal Colon A4410HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/11/2005; patient id: A4410; included in analysis: Yes
Liver Metastasis A4674UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38661; patient id: A4674; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012484
sample_title: Liver Metastasis A4674UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38661; patient id: A4674; included in analysis: Yes
Liver Metastasis A4756UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38661; patient id: A4756; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012485
sample_title: Liver Metastasis A4756UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38661; patient id: A4756; included in analysis: No
Primary Tumor A4779AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38513; patient id: A4779; included in analysis: Yes; sample date: 38513; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 40; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012486
sample_title: Primary Tumor A4779AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38513; patient id: A4779; included in analysis: Yes; sample date: 38513; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 40; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Normal Colon A4779HR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/11/2005; patient id: A4779; included in analysis: Yes; sample date: 38513; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 40; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012487
sample_title: Normal Colon A4779HR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/11/2005; patient id: A4779; included in analysis: Yes; sample date: 38513; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 40; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor A4792AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 20/05/2005; patient id: A4792; included in analysis: Yes; sample date: 20/05/2005; age: 23; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 69; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Hepatic Flexure
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012488
sample_title: Primary Tumor A4792AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 20/05/2005; patient id: A4792; included in analysis: Yes; sample date: 20/05/2005; age: 23; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 69; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Hepatic Flexure
Primary Tumor A4902AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/08/2003; patient id: A4902; included in analysis: No; sample date: 38513; age: 78; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 17; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012489
sample_title: Primary Tumor A4902AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/08/2003; patient id: A4902; included in analysis: No; sample date: 38513; age: 78; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 17; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Rectosigmoid
Primary Tumor A4902AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38513; patient id: A4902; included in analysis: Yes; sample date: 38513; age: 78; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 17; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012490
sample_title: Primary Tumor A4902AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38513; patient id: A4902; included in analysis: Yes; sample date: 38513; age: 78; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 17; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Rectosigmoid
Microadenoma A4902DR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Microadenoma; scan date: 14/08/2003; patient id: A4902; included in analysis: Yes; sample date: 38513; age: 78; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 17; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012491
sample_title: Microadenoma A4902DR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Microadenoma; scan date: 14/08/2003; patient id: A4902; included in analysis: Yes; sample date: 38513; age: 78; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 17; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Rectosigmoid
Primary Tumor A4947AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 20/05/2005; patient id: A4947; included in analysis: Yes; sample date: 20/05/2005; age: 63; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 79; recurrence: Yes; recurrence interval: 11; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012492
sample_title: Primary Tumor A4947AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 20/05/2005; patient id: A4947; included in analysis: Yes; sample date: 20/05/2005; age: 63; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 79; recurrence: Yes; recurrence interval: 11; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Polyp A5086BR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 20/05/2005; patient id: A5086; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012493
sample_title: Polyp A5086BR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 20/05/2005; patient id: A5086; included in analysis: Yes
Primary Tumor A5135AR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/08/2003; patient id: A5135; included in analysis: No; sample date: 30/11/2003; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 16; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012494
sample_title: Primary Tumor A5135AR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/08/2003; patient id: A5135; included in analysis: No; sample date: 30/11/2003; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 16; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
Primary Tumor A5135AR2_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 30/11/2003; patient id: A5135; included in analysis: Yes; sample date: 30/11/2003; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 16; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012495
sample_title: Primary Tumor A5135AR2_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 30/11/2003; patient id: A5135; included in analysis: Yes; sample date: 30/11/2003; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 16; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
Microadenoma A5135DR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Microadenoma; scan date: 14/08/2003; patient id: A5135; included in analysis: Yes; sample date: 30/11/2003; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 16; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012496
sample_title: Microadenoma A5135DR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Microadenoma; scan date: 14/08/2003; patient id: A5135; included in analysis: Yes; sample date: 30/11/2003; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 16; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Ascending colon
Polyp A5153BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/10/2005; patient id: A5153; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012497
sample_title: Polyp A5153BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/10/2005; patient id: A5153; included in analysis: Yes
Normal Colon A5153HR
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38453; patient id: A5153; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012498
sample_title: Normal Colon A5153HR
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38453; patient id: A5153; included in analysis: Yes
Primary Tumor A5320AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38696; patient id: A5320; included in analysis: Yes; sample date: 38696; age: 48; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 78; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012499
sample_title: Primary Tumor A5320AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38696; patient id: A5320; included in analysis: Yes; sample date: 38696; age: 48; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 78; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor A5465AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38696; patient id: A5465; included in analysis: Yes; sample date: 38696; age: 75; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 55; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Splenic Flexure
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012500
sample_title: Primary Tumor A5465AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38696; patient id: A5465; included in analysis: Yes; sample date: 38696; age: 75; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 55; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Splenic Flexure
Liver Metastasis A5607UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38661; patient id: A5607; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012501
sample_title: Liver Metastasis A5607UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38661; patient id: A5607; included in analysis: No
Primary Tumor A5627AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38696; patient id: A5627; included in analysis: Yes; sample date: 38696; age: 57; gender: M; t: 4; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 19; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012502
sample_title: Primary Tumor A5627AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38696; patient id: A5627; included in analysis: Yes; sample date: 38696; age: 57; gender: M; t: 4; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 19; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
Polyp A5627BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/10/2005; patient id: A5627; included in analysis: Yes; sample date: 38696; age: 57; gender: M; t: 4; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 19; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012503
sample_title: Polyp A5627BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/10/2005; patient id: A5627; included in analysis: Yes; sample date: 38696; age: 57; gender: M; t: 4; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 19; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Sigmoid colon
Polyp A5790BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/12/2005; patient id: A5790; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012504
sample_title: Polyp A5790BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/12/2005; patient id: A5790; included in analysis: Yes
Polyp A5790BR3_2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38696; patient id: A5790; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012505
sample_title: Polyp A5790BR3_2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38696; patient id: A5790; included in analysis: No
Liver Metastasis A5960UR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38630; patient id: A5960; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012506
sample_title: Liver Metastasis A5960UR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38630; patient id: A5960; included in analysis: No
Primary Tumor A6141AR
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38453; patient id: A6141; included in analysis: Yes; sample date: 38453; age: 73; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 12; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012507
sample_title: Primary Tumor A6141AR
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38453; patient id: A6141; included in analysis: Yes; sample date: 38453; age: 73; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 12; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Transverse colon
Polyp A6143BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38696; patient id: A6143; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012508
sample_title: Polyp A6143BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38696; patient id: A6143; included in analysis: Yes
Primary Tumor A6275AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38696; patient id: A6275; included in analysis: Yes; sample date: 38696; age: 87; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 55; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012509
sample_title: Primary Tumor A6275AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38696; patient id: A6275; included in analysis: Yes; sample date: 38696; age: 87; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 55; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor A7366AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/10/2005; patient id: A7366; included in analysis: Yes; sample date: 14/10/2005; age: 70; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 70; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012510
sample_title: Primary Tumor A7366AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/10/2005; patient id: A7366; included in analysis: Yes; sample date: 14/10/2005; age: 70; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 70; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor A8307AR4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 20/05/2005; patient id: A8307; included in analysis: Yes; sample date: 20/05/2005; age: 65; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 53; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012511
sample_title: Primary Tumor A8307AR4
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 20/05/2005; patient id: A8307; included in analysis: Yes; sample date: 20/05/2005; age: 65; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 53; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Polyp A8457BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/10/2005; patient id: A8457; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012512
sample_title: Polyp A8457BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/10/2005; patient id: A8457; included in analysis: Yes
Primary Tumor A8528AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 14/10/2005; patient id: A8528; included in analysis: Yes; sample date: 14/10/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 44; recurrence: Yes; recurrence interval: 19; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012513
sample_title: Primary Tumor A8528AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 14/10/2005; patient id: A8528; included in analysis: Yes; sample date: 14/10/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 44; recurrence: Yes; recurrence interval: 19; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Polyp A8528BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/10/2005; patient id: A8528; included in analysis: Yes; sample date: 14/10/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 44; recurrence: Yes; recurrence interval: 19; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012514
sample_title: Polyp A8528BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/10/2005; patient id: A8528; included in analysis: Yes; sample date: 14/10/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 44; recurrence: Yes; recurrence interval: 19; microsattelite instability: MSS; p53 mutation status: NA; anatomic location: Cecum
Polyp A9369BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 14/10/2005; patient id: A9369; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012515
sample_title: Polyp A9369BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 14/10/2005; patient id: A9369; included in analysis: Yes
Polyp C0020BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/05/2003; patient id: C0020; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012516
sample_title: Polyp C0020BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/05/2003; patient id: C0020; included in analysis: Yes
Polyp C0035BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/05/2003; patient id: C0035; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012517
sample_title: Polyp C0035BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/05/2003; patient id: C0035; included in analysis: Yes
Liver Metastasis C0045UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38443; patient id: C0045; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012518
sample_title: Liver Metastasis C0045UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38443; patient id: C0045; included in analysis: No
Polyp C0047BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/05/2003; patient id: C0047; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012519
sample_title: Polyp C0047BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/05/2003; patient id: C0047; included in analysis: Yes
Liver Metastasis C0056UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38443; patient id: C0056; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012520
sample_title: Liver Metastasis C0056UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38443; patient id: C0056; included in analysis: Yes
Liver Metastasis C0059UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38443; patient id: C0059; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012521
sample_title: Liver Metastasis C0059UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38443; patient id: C0059; included in analysis: Yes
Liver Metastasis C0068UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38443; patient id: C0068; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012522
sample_title: Liver Metastasis C0068UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38443; patient id: C0068; included in analysis: Yes
Liver Metastasis C0072UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38443; patient id: C0072; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012523
sample_title: Liver Metastasis C0072UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38443; patient id: C0072; included in analysis: Yes
Liver Metastasis C0075UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 38443; patient id: C0075; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012524
sample_title: Liver Metastasis C0075UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 38443; patient id: C0075; included in analysis: Yes
Primary Tumor C0081AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0081; included in analysis: Yes; sample date: 19/01/2005; age: 47; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 2; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012525
sample_title: Primary Tumor C0081AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0081; included in analysis: Yes; sample date: 19/01/2005; age: 47; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 2; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor C0101AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0101; included in analysis: Yes; sample date: 38473; age: 66; gender: F; t: 4; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 196; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012526
sample_title: Primary Tumor C0101AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0101; included in analysis: Yes; sample date: 38473; age: 66; gender: F; t: 4; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 196; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0104AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38443; patient id: C0104; included in analysis: Yes; sample date: 38443; age: 54; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 11; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012527
sample_title: Primary Tumor C0104AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38443; patient id: C0104; included in analysis: Yes; sample date: 38443; age: 54; gender: F; t: 4; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 11; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0105A
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0105; included in analysis: Yes; sample date: 28/12/2006; age: 78; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 89; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012528
sample_title: Primary Tumor C0105A
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0105; included in analysis: Yes; sample date: 28/12/2006; age: 78; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 89; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
Primary Tumor C0111AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0111; included in analysis: Yes; sample date: 13/06/2003; age: 58; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012529
sample_title: Primary Tumor C0111AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0111; included in analysis: Yes; sample date: 13/06/2003; age: 58; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Transverse colon
Normal Colon C0111HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/06/2003; patient id: C0111; included in analysis: Yes; sample date: 13/06/2003; age: 58; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012530
sample_title: Normal Colon C0111HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/06/2003; patient id: C0111; included in analysis: Yes; sample date: 13/06/2003; age: 58; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Transverse colon
Primary Tumor C0112AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0112; included in analysis: Yes; sample date: 13/06/2003; age: 84; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 0; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012531
sample_title: Primary Tumor C0112AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0112; included in analysis: Yes; sample date: 13/06/2003; age: 84; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 0; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0113AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38443; patient id: C0113; included in analysis: Yes; sample date: 38443; age: 61; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 79; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012532
sample_title: Primary Tumor C0113AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38443; patient id: C0113; included in analysis: Yes; sample date: 38443; age: 61; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 79; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
Primary Tumor C0114AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0114; included in analysis: Yes; sample date: 13/06/2003; age: 45; gender: F; t: 4; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 44; recurrence: Yes; recurrence interval: 24; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012533
sample_title: Primary Tumor C0114AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0114; included in analysis: Yes; sample date: 13/06/2003; age: 45; gender: F; t: 4; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 44; recurrence: Yes; recurrence interval: 24; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Normal Colon C0114HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/06/2003; patient id: C0114; included in analysis: Yes; sample date: 13/06/2003; age: 45; gender: F; t: 4; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 44; recurrence: Yes; recurrence interval: 24; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012534
sample_title: Normal Colon C0114HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/06/2003; patient id: C0114; included in analysis: Yes; sample date: 13/06/2003; age: 45; gender: F; t: 4; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 44; recurrence: Yes; recurrence interval: 24; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor C0115AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0115; included in analysis: Yes; sample date: 38473; age: 61; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012535
sample_title: Primary Tumor C0115AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0115; included in analysis: Yes; sample date: 38473; age: 61; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0117AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 18/06/2003; patient id: C0117; included in analysis: Yes; sample date: 18/06/2003; age: 71; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 38; recurrence: Yes; recurrence interval: 34; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012536
sample_title: Primary Tumor C0117AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 18/06/2003; patient id: C0117; included in analysis: Yes; sample date: 18/06/2003; age: 71; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 38; recurrence: Yes; recurrence interval: 34; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
Normal Colon C0117HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/06/2003; patient id: C0117; included in analysis: Yes; sample date: 18/06/2003; age: 71; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 38; recurrence: Yes; recurrence interval: 34; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012537
sample_title: Normal Colon C0117HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/06/2003; patient id: C0117; included in analysis: Yes; sample date: 18/06/2003; age: 71; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 38; recurrence: Yes; recurrence interval: 34; microsattelite instability: NA; p53 mutation status: NA; anatomic location: Cecum
Primary Tumor C0122AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0122; included in analysis: Yes; sample date: 38473; age: 85; gender: F; t: 2; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 26; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012538
sample_title: Primary Tumor C0122AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0122; included in analysis: Yes; sample date: 38473; age: 85; gender: F; t: 2; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 26; recurrence: Yes; recurrence interval: 18; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
Primary Tumor C0123AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0123; included in analysis: Yes; sample date: 38473; age: 56; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 112; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012539
sample_title: Primary Tumor C0123AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0123; included in analysis: Yes; sample date: 38473; age: 56; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 112; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon C0123HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/06/2003; patient id: C0123; included in analysis: Yes; sample date: 38473; age: 56; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 112; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012540
sample_title: Normal Colon C0123HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/06/2003; patient id: C0123; included in analysis: Yes; sample date: 38473; age: 56; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 112; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor C0124AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0124; included in analysis: Yes; sample date: 38473; age: 51; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 9; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012541
sample_title: Primary Tumor C0124AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0124; included in analysis: Yes; sample date: 38473; age: 51; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 9; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0125AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0125; included in analysis: Yes; sample date: 38473; age: 77; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 90; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012542
sample_title: Primary Tumor C0125AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0125; included in analysis: Yes; sample date: 38473; age: 77; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 90; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
Primary Tumor C0127AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38473; patient id: C0127; included in analysis: Yes; sample date: 38473; age: 61; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 201; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012543
sample_title: Primary Tumor C0127AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38473; patient id: C0127; included in analysis: Yes; sample date: 38473; age: 61; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 201; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor C0128AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0128; included in analysis: Yes; sample date: 19/01/2005; age: 77; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 175; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012544
sample_title: Primary Tumor C0128AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0128; included in analysis: Yes; sample date: 19/01/2005; age: 77; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 175; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Polyp C0128BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/05/2003; patient id: C0128; included in analysis: Yes; sample date: 19/01/2005; age: 77; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 175; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012545
sample_title: Polyp C0128BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/05/2003; patient id: C0128; included in analysis: Yes; sample date: 19/01/2005; age: 77; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 175; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor C0130AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0130; included in analysis: Yes; sample date: 19/01/2005; age: 71; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 196; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012546
sample_title: Primary Tumor C0130AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0130; included in analysis: Yes; sample date: 19/01/2005; age: 71; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 196; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectum
Primary Tumor C0134AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 18/06/2003; patient id: C0134; included in analysis: Yes; sample date: 18/06/2003; age: 65; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012547
sample_title: Primary Tumor C0134AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 18/06/2003; patient id: C0134; included in analysis: Yes; sample date: 18/06/2003; age: 65; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Normal Colon C0134HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/06/2003; patient id: C0134; included in analysis: Yes; sample date: 18/06/2003; age: 65; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012548
sample_title: Normal Colon C0134HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/06/2003; patient id: C0134; included in analysis: Yes; sample date: 18/06/2003; age: 65; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Primary Tumor C0136AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/05/2003; patient id: C0136; included in analysis: Yes; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012549
sample_title: Primary Tumor C0136AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/05/2003; patient id: C0136; included in analysis: Yes; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon C0136HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 19/06/2003; patient id: C0136; included in analysis: Yes; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012550
sample_title: Normal Colon C0136HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 19/06/2003; patient id: C0136; included in analysis: Yes; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Liver C0136KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 19/06/2003; patient id: C0136; included in analysis: No; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012551
sample_title: Normal Liver C0136KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 19/06/2003; patient id: C0136; included in analysis: No; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
Liver Metastasis C0136UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 28/05/2003; patient id: C0136; included in analysis: No; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012552
sample_title: Liver Metastasis C0136UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 28/05/2003; patient id: C0136; included in analysis: No; sample date: 28/05/2003; age: 80; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AWD; fup interval: 1; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-low; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor C0137AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 18/04/2003; patient id: C0137; included in analysis: Yes; sample date: 18/04/2003; age: 71; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 134; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012553
sample_title: Primary Tumor C0137AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 18/04/2003; patient id: C0137; included in analysis: Yes; sample date: 18/04/2003; age: 71; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 134; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon C0137HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/04/2003; patient id: C0137; included in analysis: Yes; sample date: 18/04/2003; age: 71; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 134; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012554
sample_title: Normal Colon C0137HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/04/2003; patient id: C0137; included in analysis: Yes; sample date: 18/04/2003; age: 71; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 134; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Liver C0139KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 24/04/2003; patient id: C0139; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012555
sample_title: Normal Liver C0139KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 24/04/2003; patient id: C0139; included in analysis: No
Normal Liver C0139KR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 13/02/2004; patient id: C0139; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012556
sample_title: Normal Liver C0139KR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 13/02/2004; patient id: C0139; included in analysis: No
Liver Metastasis C0139UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37625; patient id: C0139; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012557
sample_title: Liver Metastasis C0139UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37625; patient id: C0139; included in analysis: No
Primary Tumor C0140AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0140; included in analysis: Yes; sample date: 28/12/2006; age: 44; gender: F; t: 4; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 156; recurrence: Yes; recurrence interval: 131; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012558
sample_title: Primary Tumor C0140AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0140; included in analysis: Yes; sample date: 28/12/2006; age: 44; gender: F; t: 4; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 156; recurrence: Yes; recurrence interval: 131; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Cecum
Liver Metastasis C0141UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 19/01/2005; patient id: C0141; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012559
sample_title: Liver Metastasis C0141UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 19/01/2005; patient id: C0141; included in analysis: Yes
Liver Metastasis C0145UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 19/01/2005; patient id: C0145; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012560
sample_title: Liver Metastasis C0145UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 19/01/2005; patient id: C0145; included in analysis: No
Primary Tumor C0147AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37929; patient id: C0147; included in analysis: No; sample date: 19/01/2005; age: 73; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012561
sample_title: Primary Tumor C0147AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37929; patient id: C0147; included in analysis: No; sample date: 19/01/2005; age: 73; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0147AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0147; included in analysis: Yes; sample date: 19/01/2005; age: 73; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012562
sample_title: Primary Tumor C0147AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0147; included in analysis: Yes; sample date: 19/01/2005; age: 73; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon C0147HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 37929; patient id: C0147; included in analysis: Yes; sample date: 19/01/2005; age: 73; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012563
sample_title: Normal Colon C0147HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 37929; patient id: C0147; included in analysis: Yes; sample date: 19/01/2005; age: 73; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0149AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0149; included in analysis: Yes; sample date: 19/01/2005; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 85; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012564
sample_title: Primary Tumor C0149AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/01/2005; patient id: C0149; included in analysis: Yes; sample date: 19/01/2005; age: 67; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 85; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
Primary Tumor C0151AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/06/2003; patient id: C0151; included in analysis: Yes; sample date: 19/06/2003; age: 84; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 100; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012565
sample_title: Primary Tumor C0151AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/06/2003; patient id: C0151; included in analysis: Yes; sample date: 19/06/2003; age: 84; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 100; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Descending colon
Liver Metastasis C0152UR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 19/01/2005; patient id: C0152; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012566
sample_title: Liver Metastasis C0152UR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 19/01/2005; patient id: C0152; included in analysis: Yes
Primary Tumor C0153AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37929; patient id: C0153; included in analysis: Yes; sample date: 37929; age: 78; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: Yes; recurrence interval: 26; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012567
sample_title: Primary Tumor C0153AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37929; patient id: C0153; included in analysis: Yes; sample date: 37929; age: 78; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: Yes; recurrence interval: 26; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Colon C0153HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 37929; patient id: C0153; included in analysis: Yes; sample date: 37929; age: 78; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: Yes; recurrence interval: 26; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012568
sample_title: Normal Colon C0153HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 37929; patient id: C0153; included in analysis: Yes; sample date: 37929; age: 78; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 27; recurrence: Yes; recurrence interval: 26; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor C0154AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0154; included in analysis: Yes; sample date: 37838; age: 61; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012569
sample_title: Primary Tumor C0154AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0154; included in analysis: Yes; sample date: 37838; age: 61; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 76; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0155AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0155; included in analysis: Yes; sample date: 28/12/2006; age: 82; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 15; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Transverse colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012570
sample_title: Primary Tumor C0155AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0155; included in analysis: Yes; sample date: 28/12/2006; age: 82; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 15; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Transverse colon
Primary Tumor C0156AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 19/06/2003; patient id: C0156; included in analysis: Yes; sample date: 19/06/2003; age: 57; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 90; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012571
sample_title: Primary Tumor C0156AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 19/06/2003; patient id: C0156; included in analysis: Yes; sample date: 19/06/2003; age: 57; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 90; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor C0157AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/02/2006; patient id: C0157; included in analysis: Yes; sample date: 28/02/2006; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012572
sample_title: Primary Tumor C0157AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/02/2006; patient id: C0157; included in analysis: Yes; sample date: 28/02/2006; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon C0157H
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/12/2006; patient id: C0157; included in analysis: Yes; sample date: 28/02/2006; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012573
sample_title: Normal Colon C0157H
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/12/2006; patient id: C0157; included in analysis: Yes; sample date: 28/02/2006; age: 68; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor C0158AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0158; included in analysis: Yes; sample date: 37838; age: 58; gender: M; t: 2; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 117; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012574
sample_title: Primary Tumor C0158AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0158; included in analysis: Yes; sample date: 37838; age: 58; gender: M; t: 2; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 117; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Colon C0158H
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38453; patient id: C0158; included in analysis: Yes; sample date: 37838; age: 58; gender: M; t: 2; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 117; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012575
sample_title: Normal Colon C0158H
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38453; patient id: C0158; included in analysis: Yes; sample date: 37838; age: 58; gender: M; t: 2; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): AUN; fup interval: 117; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor C0159AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0159; included in analysis: Yes; sample date: 21/01/2005; age: 38; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 19; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012576
sample_title: Primary Tumor C0159AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0159; included in analysis: Yes; sample date: 21/01/2005; age: 38; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 19; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0168AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0168; included in analysis: Yes; sample date: 21/01/2005; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 5; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012577
sample_title: Primary Tumor C0168AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0168; included in analysis: Yes; sample date: 21/01/2005; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 5; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
Primary Tumor C0170AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0170; included in analysis: Yes; sample date: 37838; age: 65; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 169; recurrence: Yes; recurrence interval: 54; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012578
sample_title: Primary Tumor C0170AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0170; included in analysis: Yes; sample date: 37838; age: 65; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 169; recurrence: Yes; recurrence interval: 54; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0171AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0171; included in analysis: Yes; sample date: 37838; age: 64; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 203; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012579
sample_title: Primary Tumor C0171AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0171; included in analysis: Yes; sample date: 37838; age: 64; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 203; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0172AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 22/05/2003; patient id: C0172; included in analysis: Yes; sample date: 22/05/2003; age: 81; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 87; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012580
sample_title: Primary Tumor C0172AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 22/05/2003; patient id: C0172; included in analysis: Yes; sample date: 22/05/2003; age: 81; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 87; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Normal Colon C0172HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 22/05/2003; patient id: C0172; included in analysis: Yes; sample date: 22/05/2003; age: 81; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 87; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012581
sample_title: Normal Colon C0172HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 22/05/2003; patient id: C0172; included in analysis: Yes; sample date: 22/05/2003; age: 81; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 87; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Polyp C0177BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/01/2005; patient id: C0177; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012582
sample_title: Polyp C0177BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/01/2005; patient id: C0177; included in analysis: Yes
Primary Tumor C0178AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0178; included in analysis: Yes; sample date: 37838; age: 77; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 136; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012583
sample_title: Primary Tumor C0178AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0178; included in analysis: Yes; sample date: 37838; age: 77; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 136; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor C0180AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/05/2003; patient id: C0180; included in analysis: Yes; sample date: 28/05/2003; age: 79; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 98; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012584
sample_title: Primary Tumor C0180AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/05/2003; patient id: C0180; included in analysis: Yes; sample date: 28/05/2003; age: 79; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 98; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Normal Colon C0180HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/05/2003; patient id: C0180; included in analysis: Yes; sample date: 28/05/2003; age: 79; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 98; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012585
sample_title: Normal Colon C0180HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/05/2003; patient id: C0180; included in analysis: Yes; sample date: 28/05/2003; age: 79; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 98; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0181AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0181; included in analysis: Yes; sample date: 21/01/2005; age: 82; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 134; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012586
sample_title: Primary Tumor C0181AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0181; included in analysis: Yes; sample date: 21/01/2005; age: 82; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 134; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0186AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0186; included in analysis: Yes; sample date: 28/12/2006; age: 37; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 8; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012587
sample_title: Primary Tumor C0186AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0186; included in analysis: Yes; sample date: 28/12/2006; age: 37; gender: F; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 8; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0192A
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0192; included in analysis: Yes; sample date: 28/12/2006; age: 58; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 69; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012588
sample_title: Primary Tumor C0192A
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0192; included in analysis: Yes; sample date: 28/12/2006; age: 58; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 69; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0193AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 30/04/2003; patient id: C0193; included in analysis: Yes; sample date: 30/04/2003; age: 61; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012589
sample_title: Primary Tumor C0193AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 30/04/2003; patient id: C0193; included in analysis: Yes; sample date: 30/04/2003; age: 61; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Normal Colon C0193HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 30/04/2003; patient id: C0193; included in analysis: Yes; sample date: 30/04/2003; age: 61; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012590
sample_title: Normal Colon C0193HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 30/04/2003; patient id: C0193; included in analysis: Yes; sample date: 30/04/2003; age: 61; gender: M; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Primary Tumor C0194AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 18/04/2003; patient id: C0194; included in analysis: Yes; sample date: 18/04/2003; age: 75; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 27; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012591
sample_title: Primary Tumor C0194AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 18/04/2003; patient id: C0194; included in analysis: Yes; sample date: 18/04/2003; age: 75; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 27; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Normal Colon C0194HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/04/2003; patient id: C0194; included in analysis: Yes; sample date: 18/04/2003; age: 75; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 27; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012592
sample_title: Normal Colon C0194HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/04/2003; patient id: C0194; included in analysis: Yes; sample date: 18/04/2003; age: 75; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 27; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Ascending colon
Primary Tumor C0198AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 24/04/2003; patient id: C0198; included in analysis: Yes; sample date: 24/04/2003; age: 63; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012593
sample_title: Primary Tumor C0198AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 24/04/2003; patient id: C0198; included in analysis: Yes; sample date: 24/04/2003; age: 63; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon C0198HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 24/04/2003; patient id: C0198; included in analysis: Yes; sample date: 24/04/2003; age: 63; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012594
sample_title: Normal Colon C0198HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 24/04/2003; patient id: C0198; included in analysis: Yes; sample date: 24/04/2003; age: 63; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 91; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0200AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0200; included in analysis: Yes; sample date: 21/01/2005; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: NA; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012595
sample_title: Primary Tumor C0200AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0200; included in analysis: Yes; sample date: 21/01/2005; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 20; recurrence: NA; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor C0203AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0203; included in analysis: Yes; sample date: 21/01/2005; age: 55; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 124; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Wild-type; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012596
sample_title: Primary Tumor C0203AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0203; included in analysis: Yes; sample date: 21/01/2005; age: 55; gender: M; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 124; recurrence: No; recurrence interval: NA; microsattelite instability: NA; p53 mutation status: Wild-type; anatomic location: Rectum
Primary Tumor C0210AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/05/2003; patient id: C0210; included in analysis: Yes; sample date: 21/05/2003; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012597
sample_title: Primary Tumor C0210AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/05/2003; patient id: C0210; included in analysis: Yes; sample date: 21/05/2003; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
Polyp C0210BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/05/2003; patient id: C0210; included in analysis: Yes; sample date: 21/05/2003; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012598
sample_title: Polyp C0210BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/05/2003; patient id: C0210; included in analysis: Yes; sample date: 21/05/2003; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
Polyp, high grade C0210CR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp, high grade; scan date: 21/05/2003; patient id: C0210; included in analysis: Yes; sample date: 21/05/2003; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012599
sample_title: Polyp, high grade C0210CR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp, high grade; scan date: 21/05/2003; patient id: C0210; included in analysis: Yes; sample date: 21/05/2003; age: 80; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 120; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor C0221AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0221; included in analysis: Yes; sample date: 21/01/2005; age: 66; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012600
sample_title: Primary Tumor C0221AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 21/01/2005; patient id: C0221; included in analysis: Yes; sample date: 21/01/2005; age: 66; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 86; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectum
Polyp C0224BR2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/01/2005; patient id: C0224; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012601
sample_title: Polyp C0224BR2
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/01/2005; patient id: C0224; included in analysis: Yes
Primary Tumor C0225AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: C0225; included in analysis: Yes; sample date: 38598; age: 38; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 19; recurrence: Yes; recurrence interval: 12; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012602
sample_title: Primary Tumor C0225AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: C0225; included in analysis: Yes; sample date: 38598; age: 38; gender: M; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 19; recurrence: Yes; recurrence interval: 12; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectum
Normal Colon C02308H
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38453; patient id: 2308; included in analysis: Yes; sample date: 37687; age: 63; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012603
sample_title: Normal Colon C02308H
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38453; patient id: 2308; included in analysis: Yes; sample date: 37687; age: 63; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 12; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor C0234AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0234; included in analysis: Yes; sample date: 29/12/2006; age: 54; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012604
sample_title: Primary Tumor C0234AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0234; included in analysis: Yes; sample date: 29/12/2006; age: 54; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 21; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Rectum
Primary Tumor C0238AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0238; included in analysis: Yes; sample date: 17/02/2005; age: 45; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012605
sample_title: Primary Tumor C0238AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0238; included in analysis: Yes; sample date: 17/02/2005; age: 45; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 137; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectum
Normal Colon C0251HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 28/05/2003; patient id: C0251; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012606
sample_title: Normal Colon C0251HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 28/05/2003; patient id: C0251; included in analysis: Yes
Normal Liver C0251KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 28/05/2003; patient id: C0251; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012607
sample_title: Normal Liver C0251KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 28/05/2003; patient id: C0251; included in analysis: No
Polyp C0252BR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 21/05/2003; patient id: C0252; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012608
sample_title: Polyp C0252BR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 21/05/2003; patient id: C0252; included in analysis: Yes
Normal Liver C0253KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 28/05/2003; patient id: C0253; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012609
sample_title: Normal Liver C0253KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 28/05/2003; patient id: C0253; included in analysis: No
Liver Metastasis C0253UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 28/05/2003; patient id: C0253; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012610
sample_title: Liver Metastasis C0253UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 28/05/2003; patient id: C0253; included in analysis: No
Primary Tumor C0257AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0257; included in analysis: Yes; sample date: 17/02/2005; age: 78; gender: M; t: 4; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 80; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012611
sample_title: Primary Tumor C0257AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0257; included in analysis: Yes; sample date: 17/02/2005; age: 78; gender: M; t: 4; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 80; recurrence: No; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon C0265HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/04/2003; patient id: C0265; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012612
sample_title: Normal Colon C0265HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/04/2003; patient id: C0265; included in analysis: Yes
Normal Liver C0265KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 17/04/2003; patient id: C0265; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012613
sample_title: Normal Liver C0265KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 17/04/2003; patient id: C0265; included in analysis: No
Liver Metastasis C0265UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 17/04/2003; patient id: C0265; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012614
sample_title: Liver Metastasis C0265UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 17/04/2003; patient id: C0265; included in analysis: No
Primary Tumor C0273A
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0273; included in analysis: Yes; sample date: 28/12/2006; age: 59; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 159; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012615
sample_title: Primary Tumor C0273A
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0273; included in analysis: Yes; sample date: 28/12/2006; age: 59; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 159; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
Primary Tumor C0275AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0275; included in analysis: Yes; sample date: 17/02/2005; age: 74; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 29; recurrence: Yes; recurrence interval: 29; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012616
sample_title: Primary Tumor C0275AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0275; included in analysis: Yes; sample date: 17/02/2005; age: 74; gender: F; t: 3; n: 2; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 29; recurrence: Yes; recurrence interval: 29; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor C0283AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0283; included in analysis: Yes; sample date: 17/02/2005; age: 57; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 97; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012617
sample_title: Primary Tumor C0283AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0283; included in analysis: Yes; sample date: 17/02/2005; age: 57; gender: M; t: 2; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 97; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Descending colon
Primary Tumor C0285AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0285; included in analysis: Yes; sample date: 37838; age: 47; gender: M; t: 2; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 25; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012618
sample_title: Primary Tumor C0285AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0285; included in analysis: Yes; sample date: 37838; age: 47; gender: M; t: 2; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 25; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0295AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0295; included in analysis: Yes; sample date: 17/02/2005; age: 65; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 113; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012619
sample_title: Primary Tumor C0295AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0295; included in analysis: Yes; sample date: 17/02/2005; age: 65; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DUN; fup interval: 113; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Sigmoid colon
Primary Tumor C0297AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/04/2003; patient id: C0297; included in analysis: Yes; sample date: 17/04/2003; age: 85; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 66; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012620
sample_title: Primary Tumor C0297AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/04/2003; patient id: C0297; included in analysis: Yes; sample date: 17/04/2003; age: 85; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 66; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon C0297HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/04/2003; patient id: C0297; included in analysis: Yes; sample date: 17/04/2003; age: 85; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 66; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012621
sample_title: Normal Colon C0297HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/04/2003; patient id: C0297; included in analysis: Yes; sample date: 17/04/2003; age: 85; gender: F; t: 1; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 66; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Primary Tumor C0298AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0298; included in analysis: Yes; sample date: 17/02/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 75; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012622
sample_title: Primary Tumor C0298AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/02/2005; patient id: C0298; included in analysis: Yes; sample date: 17/02/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 75; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Polyp C0298BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 17/02/2005; patient id: C0298; included in analysis: Yes; sample date: 17/02/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 75; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012623
sample_title: Polyp C0298BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 17/02/2005; patient id: C0298; included in analysis: Yes; sample date: 17/02/2005; age: 62; gender: M; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 75; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor C0312AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 38598; patient id: C0312; included in analysis: Yes; sample date: 38598; age: 73; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 72; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012624
sample_title: Primary Tumor C0312AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 38598; patient id: C0312; included in analysis: Yes; sample date: 38598; age: 73; gender: F; t: 3; n: 1; m: 0; group stage: III; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOC; fup interval: 72; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Normal Colon C03156H
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38453; patient id: 3156; included in analysis: Yes; sample date: 37901; age: 80; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 79; recurrence: Yes; recurrence interval: 68; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012625
sample_title: Normal Colon C03156H
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38453; patient id: 3156; included in analysis: Yes; sample date: 37901; age: 80; gender: M; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 79; recurrence: Yes; recurrence interval: 68; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Sigmoid colon
Polyp C0319BR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Polyp; scan date: 38598; patient id: C0319; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012626
sample_title: Polyp C0319BR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Polyp; scan date: 38598; patient id: C0319; included in analysis: Yes
Primary Tumor C0323AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37838; patient id: C0323; included in analysis: Yes; sample date: 37838; age: 19; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 7; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012627
sample_title: Primary Tumor C0323AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37838; patient id: C0323; included in analysis: Yes; sample date: 37838; age: 19; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 7; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Normal Colon C0323H
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 38453; patient id: C0323; included in analysis: Yes; sample date: 37838; age: 19; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 7; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012628
sample_title: Normal Colon C0323H
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 38453; patient id: C0323; included in analysis: Yes; sample date: 37838; age: 19; gender: F; t: 3; n: 2; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 7; recurrence: NA; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: Wild-type; anatomic location: Ascending colon
Primary Tumor C0329AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 17/04/2003; patient id: C0329; included in analysis: Yes; sample date: 17/04/2003; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012629
sample_title: Primary Tumor C0329AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 17/04/2003; patient id: C0329; included in analysis: Yes; sample date: 17/04/2003; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Normal Colon C0329HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 17/04/2003; patient id: C0329; included in analysis: Yes; sample date: 17/04/2003; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012630
sample_title: Normal Colon C0329HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 17/04/2003; patient id: C0329; included in analysis: Yes; sample date: 17/04/2003; age: 70; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Descending colon
Primary Tumor C0330AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0330; included in analysis: Yes; sample date: 29/12/2006; age: 47; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 148; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012631
sample_title: Primary Tumor C0330AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0330; included in analysis: Yes; sample date: 29/12/2006; age: 47; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 148; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
Normal Liver C0331KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 17/04/2003; patient id: C0331; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012632
sample_title: Normal Liver C0331KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 17/04/2003; patient id: C0331; included in analysis: No
Liver Metastasis C0331UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 24/04/2003; patient id: C0331; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012633
sample_title: Liver Metastasis C0331UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 24/04/2003; patient id: C0331; included in analysis: No
Primary Tumor C0334AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0334; included in analysis: Yes; sample date: 29/12/2006; age: 57; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 125; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012634
sample_title: Primary Tumor C0334AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0334; included in analysis: Yes; sample date: 29/12/2006; age: 57; gender: F; t: 3; n: 0; m: 0; group stage: II; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 125; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
Primary Tumor C0353AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 25/04/2003; patient id: C0353; included in analysis: Yes; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012635
sample_title: Primary Tumor C0353AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 25/04/2003; patient id: C0353; included in analysis: Yes; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Colon C0353HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 25/04/2003; patient id: C0353; included in analysis: Yes; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012636
sample_title: Normal Colon C0353HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 25/04/2003; patient id: C0353; included in analysis: Yes; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Normal Liver C0353KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 25/04/2003; patient id: C0353; included in analysis: No; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012637
sample_title: Normal Liver C0353KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 25/04/2003; patient id: C0353; included in analysis: No; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Liver Metastasis C0353UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 25/04/2003; patient id: C0353; included in analysis: No; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012638
sample_title: Liver Metastasis C0353UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 25/04/2003; patient id: C0353; included in analysis: No; sample date: 25/04/2003; age: 65; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 47; recurrence: Yes; recurrence interval: 17; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Rectosigmoid
Primary Tumor C0415AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37900; patient id: C0415; included in analysis: Yes; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012639
sample_title: Primary Tumor C0415AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37900; patient id: C0415; included in analysis: Yes; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Normal Colon C0415HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 37900; patient id: C0415; included in analysis: Yes; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012640
sample_title: Normal Colon C0415HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 37900; patient id: C0415; included in analysis: Yes; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Normal Liver C0415KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 37900; patient id: C0415; included in analysis: No; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012641
sample_title: Normal Liver C0415KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 37900; patient id: C0415; included in analysis: No; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Liver Metastasis C0415UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 37900; patient id: C0415; included in analysis: No; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012642
sample_title: Liver Metastasis C0415UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 37900; patient id: C0415; included in analysis: No; sample date: 37900; age: 77; gender: F; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 30; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Primary Tumor C0472AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 37900; patient id: C0472; included in analysis: Yes; sample date: 37900; age: 44; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012643
sample_title: Primary Tumor C0472AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 37900; patient id: C0472; included in analysis: Yes; sample date: 37900; age: 44; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Normal Liver C0472KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 37900; patient id: C0472; included in analysis: No; sample date: 37900; age: 44; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012644
sample_title: Normal Liver C0472KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 37900; patient id: C0472; included in analysis: No; sample date: 37900; age: 44; gender: M; t: 3; n: 1; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 23; recurrence: Yes; recurrence interval: 6; microsattelite instability: MSS; p53 mutation status: Mutant; anatomic location: Cecum
Primary Tumor C0487AR3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0487; included in analysis: Yes; sample date: 29/12/2006; age: 23; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 35; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012645
sample_title: Primary Tumor C0487AR3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 29/12/2006; patient id: C0487; included in analysis: Yes; sample date: 29/12/2006; age: 23; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 35; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
Normal Colon c0487hr3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 18/05/2006; patient id: C0487; included in analysis: Yes; sample date: 29/12/2006; age: 23; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 35; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012646
sample_title: Normal Colon c0487hr3
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 18/05/2006; patient id: C0487; included in analysis: Yes; sample date: 29/12/2006; age: 23; gender: F; t: 2; n: 0; m: 0; group stage: I; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): NED; fup interval: 35; recurrence: No; recurrence interval: NA; microsattelite instability: MSI-high; p53 mutation status: NA; anatomic location: Ascending colon
Primary Tumor C0575A
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0575; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012647
sample_title: Primary Tumor C0575A
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 28/12/2006; patient id: C0575; included in analysis: No
Normal Colon C0575HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 37900; patient id: C0575; included in analysis: Yes
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012648
sample_title: Normal Colon C0575HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 37900; patient id: C0575; included in analysis: Yes
Normal Liver C0575KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 37900; patient id: C0575; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012649
sample_title: Normal Liver C0575KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 37900; patient id: C0575; included in analysis: No
Liver Metastasis C0575UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/06/2003; patient id: C0575; included in analysis: No
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012650
sample_title: Liver Metastasis C0575UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/06/2003; patient id: C0575; included in analysis: No
Primary Tumor C0667AR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0667; included in analysis: Yes; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012651
sample_title: Primary Tumor C0667AR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Primary Tumor; scan date: 13/06/2003; patient id: C0667; included in analysis: Yes; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Normal Colon C0667HR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 13/06/2003; patient id: C0667; included in analysis: No; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012652
sample_title: Normal Colon C0667HR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 13/06/2003; patient id: C0667; included in analysis: No; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Normal Colon C0667HR1_ez
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Colon; scan date: 30/11/2003; patient id: C0667; included in analysis: Yes; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012653
sample_title: Normal Colon C0667HR1_ez
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Colon; scan date: 30/11/2003; patient id: C0667; included in analysis: Yes; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Normal Liver C0667KR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Normal Liver; scan date: 13/06/2003; patient id: C0667; included in analysis: No; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012654
sample_title: Normal Liver C0667KR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Normal Liver; scan date: 13/06/2003; patient id: C0667; included in analysis: No; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
Liver Metastasis C0667UR1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Tissue samples taken from colorectal cancer patients
- Characteristics
- tissue: Liver Metastasis; scan date: 13/06/2003; patient id: C0667; included in analysis: No; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1012655
sample_title: Liver Metastasis C0667UR1
source_name: Tissue samples taken from colorectal cancer patients
characteristics: tissue: Liver Metastasis; scan date: 13/06/2003; patient id: C0667; included in analysis: No; sample date: 13/06/2003; age: 39; gender: M; t: 3; n: 0; m: 1; group stage: IV; fup status (ned, no evidence of disease, awd, alive with disease, aun, alive unknown, dod, dead of disease, doc, dead of other cause, dun, dead, cause unknown): DOD; fup interval: 18; recurrence: NA; recurrence interval: NA; microsattelite instability: MSS; p53 mutation status: Wild-type; anatomic location: Rectosigmoid