GSE4183

Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

30 case / 8 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 53 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Györffy B
Contact name: Balazs Györffy
Submission date: 2006-02-06
Last update: 2019-10-29
Organization: Hungarian Academy of Sciences
Department: Not available
Public date: 2007-10-31
Experiment types: Expression profiling by array
Platforms: GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA95145

Summary

Background and Aims: Gene expression analysis of colon biopsies using high-density oligonucleotide microarray can contribute to the understanding of local pathophysiological alterations and to functional classification of precancerous adenoma, different stage colorectal carcinomas (CRC) and inflammatory bowel diseases (IBD). Results: Significant overexpression of collagen IV, lipocalin-2, caveolin-1, calumenin genes, and significant dowregulation of aquaporin-8, amnionless homolog, prostaglandin D2 receptor genes were detected in CRC patients compared to normal. Adenoma samples were characterized by upregulated CD44 antigen, met proto-oncogene and downregulated chemokine ligand-12, ADAM-like decysin-1 and ATP-binding casette A8 discriminatory genes. In IBD samples significantly increased lipocalin-2, interferon induced transmembrane protein 1 and 3 mRNA levels, decreased zinc finger protein 91 and transient receptor potential cation channel M6 mRNA levels were found. Ulcerative colitis and Crohn’s disease can be distinguished according to the top five genes: cyclin-G2; tripartite motif-containing-31; TNFR shedding aminopeptidase regulator-1; C-type lectin superfamily member-14 and AMICA. 88.3-97.8% of the cases was correctly classified according to discriminatory genes. Conclusions: Our whole genomic microarray analysis of biopsy samples provides discriminative signatures, and an insight into pathophysiological background of colonic diseases. The results afford a data warehouse which can be further mined for in-depth pathway analyses. Keywords: Colon biopsy specimens in diseased and normal state

Overall design

Total RNA was extracted, amplified and biotinylated from frozen colonic biopsies of 15 patients with CRC, 15 with adenoma, 15 with IBD and 8 healthy normal controls. Genome-wide gene expression profile was evaluated by HGU133 Plus 2.0 microarrays. Gene expression was also measured by real-time PCR.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 53 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Curated expression experiment linkage and source URL. Expression Atlas accession E-GEOD-4183	Available
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 12 linked publications 12 DOIs Primary publication Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature. Disease markers, 2008 PubMed DOI Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples. PloS one, 2009 PubMed DOI Dysplasia-carcinoma transition specific transcripts in colonic biopsy samples. PloS one, 2012 PubMed DOI Related publications VIPR1 induces cuproptosis and inhibits the HIF-1α pathway in colon cancer. Journal of biochemical and molecular toxicology, 2025 PubMed DOI Identification of key genes associated with colorectal cancer based on the transcriptional network. Pathology oncology research : POR, 2015 PubMed DOI Downregulation of solute carrier family 4 members 4 as a biomarker for colorectal cancer. Discover oncology, 2025 PubMed DOI IKZF1 promotes pyroptosis and prevents M2 macrophage polarization by inhibiting JAK2/STAT5 pathway in colon cancer. Biochimica et biophysica acta. Molecular basis of disease, 2025 PubMed DOI Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability. PloS one, 2010 PubMed DOI Myofibroblast-derived SFRP1 as potential inhibitor of colorectal carcinoma field effect. PloS one, 2014 PubMed DOI Identification CCL2,CXCR2,S100A9 of the immune-related gene markers and immune infiltration characteristics of inflammatory bowel disease and heart failure via bioinformatics analysis and machine learning. Frontiers in cardiovascular medicine, 2023 PubMed DOI Identification of shared gene signatures and molecular mechanisms between chronic kidney disease and ulcerative colitis. Frontiers in immunology, 2023 PubMed DOI Aging related methylation influences the gene expression of key control genes in colorectal cancer and adenoma. World journal of gastroenterology, 2016 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

15 samples are still unassigned.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 15 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, colorectal cancer, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Colorectal cancer 30 samples
Likely control group Normal tissue 8 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Interpreted disease metadata: Colorectal cancer, Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: Expression Atlas curated experiment link is available.
External evidence: PubMed links 12 publications; 12 DOIs available: PMID 18776587, PMID 19461970, PMID 20957034, PMID 23155391, PMID 25405986.
Publication context: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature.. Disease markers, 2008. PMID 18776587. DOI 10.1155/2008/586721.
Publication context: Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples.. PloS one, 2009. PMID 19461970. DOI 10.1371/journal.pone.0005645.
Publication context: Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability.. PloS one, 2010. PMID 20957034. DOI 10.1371/journal.pone.0013091.
Publication context: 9 additional linked PubMed publications are available.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

257 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM95473 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95474 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95475 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95476 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95477 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95478 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95479 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95480 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95481 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95482 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95483 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95484 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95485 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95486 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95487 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95488 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95489 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95490 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95491 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95492 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95493 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95494 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95495 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95496 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95497 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95498 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95499 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95500 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95501 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95502 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95503 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95504 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95505 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95506 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95507 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95508 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95509 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95510 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95511 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95512 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95513 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95514 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95515 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95516 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95517 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95518 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95519 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95520 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95521 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95522 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95523 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95524 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM95525 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon biopsy sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... keyword match keyword match: microarray

collection_method biopsy GSM95473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1024 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1081 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1114 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1122 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1357 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1431 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1440 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1456 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1115 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1138 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1141 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1154 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1187 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1312 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1419 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1700 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1748 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1830 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1832 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_956 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_980 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_983 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_995 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1146 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1158 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1293 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95499 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1316 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95500 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1377 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95501 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1479 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95502 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1486 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95503 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1494 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95504 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1499 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95505 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1556 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95506 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1651 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95507 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1708 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95508 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1739 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95509 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1761 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95510 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1883 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95511 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1110 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95512 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1118 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95513 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1537 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95514 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1670 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95515 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1802 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95516 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_923 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95517 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1017 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95518 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1060 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95519 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1156 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95520 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1175 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95521 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1368 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95522 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1533 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95523 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1606 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95524 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1665 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM95525 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_939 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary collection method match: biopsy

disease Crohn's disease GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease colorectal cancer GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... controlled vocabulary controlled vocabulary disease match: crc

disease inflammatory bowel disease GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... controlled vocabulary controlled vocabulary disease match: inflammatory bowel

disease ulcerative colitis GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease colorectal cancer GSM95496 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1146 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95497 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1158 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95498 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1293 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95499 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1316 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95500 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1377 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95501 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1479 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95502 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1486 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95503 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1494 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95504 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1499 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95505 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1556 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95506 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1651 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95507 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1708 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95508 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1739 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95509 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1761 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease colorectal cancer GSM95510 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence crc colon_CRC_1883 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: crc

disease inflammatory bowel disease GSM95511 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1110 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95512 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1118 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95513 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1537 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95514 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1670 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95515 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1802 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95516 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_923 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95517 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1017 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95518 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1060 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95519 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1156 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95520 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1175 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95521 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1368 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95522 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1533 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95523 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1606 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95524 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_1665 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM95525 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd colon_IBD_939 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary disease match: ibd

organism Homo sapiens GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM95473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1024 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1081 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1114 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1122 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1357 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1431 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1440 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_normal_1456 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1115 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1138 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1141 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1154 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1187 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1312 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1419 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1700 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1748 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1830 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_1832 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_956 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_980 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_983 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_adenoma_995 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1146 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1158 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1293 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95499 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1316 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95500 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1377 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95501 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1479 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95502 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1486 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95503 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1494 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95504 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1499 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95505 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1556 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95506 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1651 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95507 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1708 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95508 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1739 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95509 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1761 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95510 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_CRC_1883 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95511 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1110 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95512 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1118 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95513 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1537 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95514 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1670 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95515 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1802 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95516 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_923 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95517 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1017 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95518 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1060 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95519 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1156 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95520 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1175 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95521 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1368 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95522 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1533 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95523 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1606 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95524 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_1665 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM95525 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colon_IBD_939 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type normal tissue GSM95473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1024 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1081 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1114 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1122 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1357 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1431 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1440 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM95480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal colon_normal_1456 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary sample type match: normal

tissue colon GSE4183 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE4183 dataset_title: Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature organism: Homo sapi... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1024 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1081 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1114 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1122 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1357 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1431 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1440 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_normal_1456 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1115 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1138 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1141 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1154 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1187 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1312 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1419 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1700 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1748 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1830 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_1832 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_956 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_980 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_983 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_adenoma_995 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1146 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1158 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1293 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95499 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1316 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95500 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1377 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95501 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1479 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95502 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1486 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95503 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1494 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95504 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1499 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95505 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1556 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95506 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1651 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95507 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1708 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95508 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1739 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95509 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1761 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95510 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_CRC_1883 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95511 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1110 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95512 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1118 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95513 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1537 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95514 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1670 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95515 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1802 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95516 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_923 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95517 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1017 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95518 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1060 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95519 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1156 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95520 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1175 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95521 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1368 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95522 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1533 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95523 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1606 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95524 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_1665 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM95525 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colon_IBD_939 colon biopsy biopsy specimen controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

53 rows shown Show Hide

Study totals: Case 30 | Control 8 | Unassigned 15 | Excluded 0 | Ambiguous 0 53 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Colorectal cancer	Case	GSM95496	Colon_CRC_1146	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95497	Colon_CRC_1158	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95498	Colon_CRC_1293	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95499	Colon_CRC_1316	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95500	Colon_CRC_1377	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95501	Colon_CRC_1479	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95502	Colon_CRC_1486	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95503	Colon_CRC_1494	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95504	Colon_CRC_1499	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95505	Colon_CRC_1556	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95506	Colon_CRC_1651	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95507	Colon_CRC_1708	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95508	Colon_CRC_1739	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95509	Colon_CRC_1761	Colon biopsy Biopsy specimen	Case marker detected.
Colorectal cancer	Case	GSM95510	Colon_CRC_1883	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95511	Colon_IBD_1110	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95512	Colon_IBD_1118	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95513	Colon_IBD_1537	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95514	Colon_IBD_1670	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95515	Colon_IBD_1802	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95516	Colon_IBD_923	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95517	Colon_IBD_1017	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95518	Colon_IBD_1060	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95519	Colon_IBD_1156	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95520	Colon_IBD_1175	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95521	Colon_IBD_1368	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95522	Colon_IBD_1533	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95523	Colon_IBD_1606	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95524	Colon_IBD_1665	Colon biopsy Biopsy specimen	Case marker detected.
Inflammatory bowel disease	Case	GSM95525	Colon_IBD_939	Colon biopsy Biopsy specimen	Case marker detected.
Normal tissue	Control	GSM95473	Colon_normal_1024	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95474	Colon_normal_1081	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95475	Colon_normal_1114	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95476	Colon_normal_1122	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95477	Colon_normal_1357	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95478	Colon_normal_1431	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95479	Colon_normal_1440	Colon biopsy Biopsy specimen	Control marker detected.
Normal tissue	Control	GSM95480	Colon_normal_1456	Colon biopsy Biopsy specimen	Control marker detected.
Unassigned	Unassigned	GSM95481	Colon_adenoma_1115	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95482	Colon_adenoma_1138	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95483	Colon_adenoma_1141	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95484	Colon_adenoma_1154	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95485	Colon_adenoma_1187	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95486	Colon_adenoma_1312	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95487	Colon_adenoma_1419	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95488	Colon_adenoma_1700	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95489	Colon_adenoma_1748	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95490	Colon_adenoma_1830	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95491	Colon_adenoma_1832	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95492	Colon_adenoma_956	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95493	Colon_adenoma_980	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95494	Colon_adenoma_983	Colon biopsy Biopsy specimen	No explicit case or control marker detected.
Unassigned	Unassigned	GSM95495	Colon_adenoma_995	Colon biopsy Biopsy specimen	No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Related publications

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort