GSE42296 matching samples

GSM1037296

Excluded

Before treatment (week 0) IBDB14

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB14 PBMC cell type: PBMC; subject: Patient 1; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB14 PBMC cell type: PBMC; subject: Patient 1; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 1; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037296
sample_title: Before treatment (week 0) IBDB14
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 1; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037297

Excluded

Before treatment (week 0) IBDB17

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB17 PBMC cell type: PBMC; subject: Patient 2; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB17 PBMC cell type: PBMC; subject: Patient 2; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 2; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037297
sample_title: Before treatment (week 0) IBDB17
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 2; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037298

Excluded

Before treatment (week 0) IBDB18

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB18 PBMC cell type: PBMC; subject: Patient 3; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB18 PBMC cell type: PBMC; subject: Patient 3; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 3; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037298
sample_title: Before treatment (week 0) IBDB18
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 3; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037299

Excluded

Before treatment (week 0) IBDB22

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB22 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB22 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037299
sample_title: Before treatment (week 0) IBDB22
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037300

Excluded

Before treatment (week 0) IBDB27

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB27 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB27 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037300
sample_title: Before treatment (week 0) IBDB27
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037301

Excluded

Before treatment (week 0) IBDB28

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB28 PBMC cell type: PBMC; subject: Patient 6; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB28 PBMC cell type: PBMC; subject: Patient 6; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 6; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037301
sample_title: Before treatment (week 0) IBDB28
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 6; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037302

Excluded

Before treatment (week 0) IBDB33

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB33 PBMC cell type: PBMC; subject: Patient 7; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB33 PBMC cell type: PBMC; subject: Patient 7; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 7; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037302
sample_title: Before treatment (week 0) IBDB33
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 7; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037303

Excluded

Before treatment (week 0) IBDB34

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB34 PBMC cell type: PBMC; subject: Patient 8; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB34 PBMC cell type: PBMC; subject: Patient 8; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 8; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037303
sample_title: Before treatment (week 0) IBDB34
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 8; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037304

Excluded

Before treatment (week 0) IBDB37

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB37 PBMC cell type: PBMC; subject: Patient 9; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB37 PBMC cell type: PBMC; subject: Patient 9; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 9; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037304
sample_title: Before treatment (week 0) IBDB37
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 9; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037305

Excluded

Before treatment (week 0) IBDB40

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB40 PBMC cell type: PBMC; subject: Patient 10; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB40 PBMC cell type: PBMC; subject: Patient 10; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 10; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037305
sample_title: Before treatment (week 0) IBDB40
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 10; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037306

Excluded

Before treatment (week 0) IBDB39

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB39 PBMC cell type: PBMC; subject: Patient 11; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB39 PBMC cell type: PBMC; subject: Patient 11; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 11; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037306
sample_title: Before treatment (week 0) IBDB39
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 11; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037307

Excluded

Before treatment (week 0) IBDB44

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB44 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB44 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037307
sample_title: Before treatment (week 0) IBDB44
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037308

Excluded

Before treatment (week 0) IBDB42

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB42 PBMC cell type: PBMC; subject: Patient 13; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB42 PBMC cell type: PBMC; subject: Patient 13; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 13; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037308
sample_title: Before treatment (week 0) IBDB42
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 13; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037309

Excluded

Before treatment (week 0) IBDB41

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB41 PBMC cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB41 PBMC cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037309
sample_title: Before treatment (week 0) IBDB41
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037310

Excluded

Before treatment (week 0) IBDB26

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB26 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB26 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037310
sample_title: Before treatment (week 0) IBDB26
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037311

Excluded

Before treatment (week 0) IBDB23

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB23 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB23 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037311
sample_title: Before treatment (week 0) IBDB23
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037312

Excluded

Before treatment (week 0) IBDB13

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB13 PBMC cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB13 PBMC cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037312
sample_title: Before treatment (week 0) IBDB13
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037313

Excluded

Before treatment (week 0) IBDB08

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB08 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB08 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037313
sample_title: Before treatment (week 0) IBDB08
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037314

Excluded

Before treatment (week 0) IBDB03

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB03 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB03 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037314
sample_title: Before treatment (week 0) IBDB03
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037315

Excluded

Before treatment (week 0) IBDB01

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB01 PBMC cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) IBDB01 PBMC cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037315
sample_title: Before treatment (week 0) IBDB01
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Crohn's disease

GSM1037316

Excluded

After treatment (week 2) IBDB16

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB16 PBMC cell type: PBMC; subject: Patient 1; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB16 PBMC cell type: PBMC; subject: Patient 1; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 1; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037316
sample_title: After treatment (week 2) IBDB16
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 1; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037317

Excluded

After treatment (week 2) IBDB19

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB19 PBMC cell type: PBMC; subject: Patient 2; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB19 PBMC cell type: PBMC; subject: Patient 2; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 2; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037317
sample_title: After treatment (week 2) IBDB19
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 2; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037318

Excluded

After treatment (week 2) IBDB21

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB21 PBMC cell type: PBMC; subject: Patient 3; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB21 PBMC cell type: PBMC; subject: Patient 3; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 3; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037318
sample_title: After treatment (week 2) IBDB21
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 3; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037319

Excluded

After treatment (week 2) IBDB24

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB24 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB24 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037319
sample_title: After treatment (week 2) IBDB24
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037320

Excluded

After treatment (week 2) IBDB29

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB29 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB29 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037320
sample_title: After treatment (week 2) IBDB29
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037321

Excluded

After treatment (week 2) IBDB30

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB30 PBMC cell type: PBMC; subject: Patient 6; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB30 PBMC cell type: PBMC; subject: Patient 6; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 6; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037321
sample_title: After treatment (week 2) IBDB30
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 6; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037322

Excluded

After treatment (week 2) IBDB35

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB35 PBMC cell type: PBMC; subject: Patient 7; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB35 PBMC cell type: PBMC; subject: Patient 7; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 7; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037322
sample_title: After treatment (week 2) IBDB35
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 7; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037323

Excluded

After treatment (week 2) IBDB36

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB36 PBMC cell type: PBMC; subject: Patient 8; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB36 PBMC cell type: PBMC; subject: Patient 8; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 8; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037323
sample_title: After treatment (week 2) IBDB36
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 8; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037324

Excluded

After treatment (week 2) IBDB38

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB38 PBMC cell type: PBMC; subject: Patient 9; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB38 PBMC cell type: PBMC; subject: Patient 9; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 9; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037324
sample_title: After treatment (week 2) IBDB38
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 9; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037325

Excluded

After treatment (week 2) IBDB43

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB43 PBMC cell type: PBMC; subject: Patient 10; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB43 PBMC cell type: PBMC; subject: Patient 10; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 10; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037325
sample_title: After treatment (week 2) IBDB43
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 10; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037326

Excluded

After treatment (week 2) IBDB46

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB46 PBMC cell type: PBMC; subject: Patient 11; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB46 PBMC cell type: PBMC; subject: Patient 11; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 11; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037326
sample_title: After treatment (week 2) IBDB46
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 11; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037327

Excluded

After treatment (week 2) IBDB49

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB49 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB49 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037327
sample_title: After treatment (week 2) IBDB49
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037328

Excluded

After treatment (week 2) IBDB47

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB47 PBMC cell type: PBMC; subject: Patient 13; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB47 PBMC cell type: PBMC; subject: Patient 13; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 13; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037328
sample_title: After treatment (week 2) IBDB47
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 13; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037329

Excluded

After treatment (week 2) IBDB45

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB45 PBMC cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB45 PBMC cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037329
sample_title: After treatment (week 2) IBDB45
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 14; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037330

Excluded

After treatment (week 2) IBDB31

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB31 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB31 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037330
sample_title: After treatment (week 2) IBDB31
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037331

Excluded

After treatment (week 2) IBDB25

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB25 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB25 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037331
sample_title: After treatment (week 2) IBDB25
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037332

Excluded

After treatment (week 2) IBDB15

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB15 PBMC cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB15 PBMC cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037332
sample_title: After treatment (week 2) IBDB15
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 17; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037333

Excluded

After treatment (week 2) IBDB11

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB11 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB11 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037333
sample_title: After treatment (week 2) IBDB11
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037334

Excluded

After treatment (week 2) IBDB05

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB05 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB05 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037334
sample_title: After treatment (week 2) IBDB05
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037335

Excluded

After treatment (week 2) IBDB02

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB02 PBMC cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) IBDB02 PBMC cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037335
sample_title: After treatment (week 2) IBDB02
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 20; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Crohn's disease

GSM1037336

Excluded

Before treatment (week 0) RAB07

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB07 PBMC cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB07 PBMC cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037336
sample_title: Before treatment (week 0) RAB07
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037337

Excluded

Before treatment (week 0) RAB101

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB101 PBMC cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB101 PBMC cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037337
sample_title: Before treatment (week 0) RAB101
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037338

Excluded

Before treatment (week 0) RAB103

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB103 PBMC cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB103 PBMC cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037338
sample_title: Before treatment (week 0) RAB103
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037339

Excluded

Before treatment (week 0) RAB104

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB104 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB104 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037339
sample_title: Before treatment (week 0) RAB104
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037340

Excluded

Before treatment (week 0) RAB31

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB31 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB31 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037340
sample_title: Before treatment (week 0) RAB31
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037341

Excluded

Before treatment (week 0) RAB41

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB41 PBMC cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB41 PBMC cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037341
sample_title: Before treatment (week 0) RAB41
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037342

Excluded

Before treatment (week 0) RAB63

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB63 PBMC cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB63 PBMC cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037342
sample_title: Before treatment (week 0) RAB63
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037343

Excluded

Before treatment (week 0) RAB72

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB72 PBMC cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB72 PBMC cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037343
sample_title: Before treatment (week 0) RAB72
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037344

Excluded

Before treatment (week 0) RAB83

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB83 PBMC cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB83 PBMC cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arth...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037344
sample_title: Before treatment (week 0) RAB83
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037345

Excluded

Before treatment (week 0) RAB90

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB90 PBMC cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB90 PBMC cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037345
sample_title: Before treatment (week 0) RAB90
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037346

Excluded

Before treatment (week 0) RAB93

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB93 PBMC cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB93 PBMC cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037346
sample_title: Before treatment (week 0) RAB93
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037347

Excluded

Before treatment (week 0) RAB97

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB97 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB97 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037347
sample_title: Before treatment (week 0) RAB97
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037348

Excluded

Before treatment (week 0) RAB98

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB98 PBMC cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB98 PBMC cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid art...

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037348
sample_title: Before treatment (week 0) RAB98
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037349

Excluded

Before treatment (week 0) RAB28

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB28 PBMC cell type: PBMC; subject: Patient 14; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB28 PBMC cell type: PBMC; subject: Patient 14; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 14; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037349
sample_title: Before treatment (week 0) RAB28
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 14; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037350

Excluded

Before treatment (week 0) RAB35

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB35 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB35 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037350
sample_title: Before treatment (week 0) RAB35
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037351

Excluded

Before treatment (week 0) RAB42

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB42 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB42 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037351
sample_title: Before treatment (week 0) RAB42
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037352

Excluded

Before treatment (week 0) RAB53

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB53 PBMC cell type: PBMC; subject: Patient 17; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB53 PBMC cell type: PBMC; subject: Patient 17; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 17; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037352
sample_title: Before treatment (week 0) RAB53
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 17; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037353

Excluded

Before treatment (week 0) RAB56

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB56 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB56 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037353
sample_title: Before treatment (week 0) RAB56
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037354

Excluded

Before treatment (week 0) RAB60

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB60 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- Before treatment (week 0) RAB60 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037354
sample_title: Before treatment (week 0) RAB60
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: Before treatment; time: week 0; disease state: Rheumatoid arthritis

GSM1037355

Excluded

After treatment (week 2) RAB17

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB17 PBMC cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB17 PBMC cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037355
sample_title: After treatment (week 2) RAB17
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 1; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037356

Excluded

After treatment (week 2) RAB105

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB105 PBMC cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB105 PBMC cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037356
sample_title: After treatment (week 2) RAB105
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 2; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037357

Excluded

After treatment (week 2) RAB106

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB106 PBMC cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB106 PBMC cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037357
sample_title: After treatment (week 2) RAB106
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 3; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037358

Excluded

After treatment (week 2) RAB107

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB107 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB107 PBMC cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037358
sample_title: After treatment (week 2) RAB107
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 4; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037359

Excluded

After treatment (week 2) RAB43

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB43 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB43 PBMC cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037359
sample_title: After treatment (week 2) RAB43
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 5; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037360

Excluded

After treatment (week 2) RAB50

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB50 PBMC cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB50 PBMC cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037360
sample_title: After treatment (week 2) RAB50
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 6; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037361

Excluded

After treatment (week 2) RAB66

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB66 PBMC cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB66 PBMC cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037361
sample_title: After treatment (week 2) RAB66
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 7; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037362

Excluded

After treatment (week 2) RAB75

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB75 PBMC cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB75 PBMC cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037362
sample_title: After treatment (week 2) RAB75
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 8; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037363

Excluded

After treatment (week 2) RAB87

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB87 PBMC cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB87 PBMC cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037363
sample_title: After treatment (week 2) RAB87
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 9; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037364

Excluded

After treatment (week 2) RAB94

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB94 PBMC cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB94 PBMC cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037364
sample_title: After treatment (week 2) RAB94
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 10; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037365

Excluded

After treatment (week 2) RAB96

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB96 PBMC cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB96 PBMC cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037365
sample_title: After treatment (week 2) RAB96
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 11; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037366

Excluded

After treatment (week 2) RAB100

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB100 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB100 PBMC cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037366
sample_title: After treatment (week 2) RAB100
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 12; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037367

Excluded

After treatment (week 2) RAB102

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB102 PBMC cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB102 PBMC cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037367
sample_title: After treatment (week 2) RAB102
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 13; response: NR - non-responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037368

Excluded

After treatment (week 2) RAB38

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB38 PBMC cell type: PBMC; subject: Patient 14; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB38 PBMC cell type: PBMC; subject: Patient 14; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 14; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037368
sample_title: After treatment (week 2) RAB38
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 14; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037369

Excluded

After treatment (week 2) RAB44

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB44 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB44 PBMC cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037369
sample_title: After treatment (week 2) RAB44
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 15; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037370

Excluded

After treatment (week 2) RAB52

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB52 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB52 PBMC cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037370
sample_title: After treatment (week 2) RAB52
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 16; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037371

Excluded

After treatment (week 2) RAB59

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB59 PBMC cell type: PBMC; subject: Patient 17; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB59 PBMC cell type: PBMC; subject: Patient 17; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 17; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037371
sample_title: After treatment (week 2) RAB59
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 17; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037372

Excluded

After treatment (week 2) RAB62

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB62 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB62 PBMC cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037372
sample_title: After treatment (week 2) RAB62
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 18; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

GSM1037373

Excluded

After treatment (week 2) RAB68

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB68 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Does not meet requirement
- The reported value differs from the selected requirement.
- After treatment (week 2) RAB68 PBMC cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Source metadata

Source name: PBMC
Characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1037373
sample_title: After treatment (week 2) RAB68
source_name: PBMC
characteristics: cell type: PBMC; subject: Patient 19; response: R - responder; treatment: infliximab; time: week 2; disease state: Rheumatoid arthritis

Included samples (0)

Uncertain samples (0)

Excluded samples (78)