GSE47908

Transcriptional analysis of left-sided colitis, pancolitis and ulcerative colitis-associated dysplasia

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

45 case / 15 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
microarray
Organism
Homo sapiens
Whole-study samples
60 samples
Specimen
Biopsy
Reported/interpreted study design
Disease/model vs control Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
Bjerrum JT, Nielsen OH, Riis LB, Pittet V, Mueller C, Rogler G, Olsen J
Contact name
Jacob Tveiten Bjerrum
Submission date
2013-06-13
Last update
2019-03-25
Organization
Herlev Hospital
Department
Department of Gastroenterology, Medical Section
Public date
2014-12-31
Experiment types
Expression profiling by array
Platforms
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Series type
Series
SubSeries
Not available
BioProject
PRJNA208298

Summary

This study characterizes the inflammatory processes in left-sided colitis, pancolitis, and UC-associated dysplasia at the transcriptional level in colonics biopsies in order to identify potential biomarkers and transcripts of importance for the carcinogenic behaviour of chronic inflammation

Overall design

Colonic biopsies were obtained from forty-five patients with UC (20 left-sided colitis, 19 pancolitis, and 6 UC-associated dysplasia) and 15 controls. The Affymetrix GeneChip Human Genome U133 Plus 2.0 was used

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
60 GSM samples
 Primary source
recount3

Planned trusted source for processed count availability.

 No match found
Expression Atlas

Planned source for curated expression experiment links.

 No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

17 linked publications 17 DOIs

Primary publication

  1. Transcriptional analysis of left-sided colitis, pancolitis, and ulcerative colitis-associated dysplasia. Inflammatory bowel diseases, 2014

Related publications

  1. Exploring the potential causal relationship between gut microbiota and heart failure: A two-sample mendelian randomization study combined with the geo database. Current problems in cardiology, 2024
  2. Shared biomarkers and immune cell infiltration signatures in ulcerative colitis and nonalcoholic steatohepatitis. Scientific reports, 2023
  3. Machine learning-based identification of a metabolic cell death gene signature for assessing disease activity and immunological landscape in inflammatory bowel disease. Scientific reports, 2026
  4. Molecular Network Analyses Implicate Death-Associated Protein Kinase 3 (DAPK3) as a Key Factor in Colitis-Associated Dysplasia Progression. Inflammatory bowel diseases, 2022
  5. Identification of potential biomarkers for ulcerative colitis based on multidimensional data analysis and investigation of the mechanisms of therapeutic effects. BMC gastroenterology, 2026
  6. Identification of key genes as diagnostic biomarkers for IBD using bioinformatics and machine learning. Journal of translational medicine, 2025
  7. Identification and experimental validation of ulcerative colitis-associated hub genes through integrated WGCNA and lysosomal autophagy analysis. Human genomics, 2025
  8. Bifenthrin exacerbates ulcerative colitis via immunotoxicity: network toxicology and experimental validation reveal novel therapeutic targets. BMC pharmacology & toxicology, 2026
  9. Protective Effect of Qingchang Wenzhong Decoction on Colitis and Colitis-Related Carcinogenesis by Regulating Inflammation and Intestinal Fibrosis. Journal of inflammation research, 2023
  10. Exploring the common mechanism of vascular dementia and inflammatory bowel disease: a bioinformatics-based study. Frontiers in immunology, 2024
  11. Molecular mechanisms of ferroptosis in ulcerative colitis: insights from machine learning, WGCNA, and immune cell infiltration analysis. Frontiers in immunology, 2025
  12. A multi-machine learning framework identifies novel PANoptosis-related biomarkers and their immune landscape in ulcerative colitis: Insights from transcriptomics and experimental validation. Frontiers in immunology, 2026
  13. A preclinical investigation into the potential associations of geraniin with ulcerative colitis alleviation through integrated multi-omics and in vivo analysis. Frontiers in medicine, 2026
  14. Exploring Immune Cell Infiltration and Small Molecule Compounds for Ulcerative Colitis Treatment. Genes, 2024
  15. Shared Genes of PPARG and NOS2 in Alzheimer's Disease and Ulcerative Colitis Drive Macrophages and Microglia Polarization: Evidence from Bioinformatics Analysis and Following Validation. International journal of molecular sciences, 2023
  16. Identification of key genes and biological processes contributing to colitis associated dysplasia in ulcerative colitis. PeerJ, 2021
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Ulcerative colitis 45 samples
  • Likely control group Control 15 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
  • Interpreted disease metadata: Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 17 publications; 17 DOIs available: PMID 25358065, PMID 33987007, PMID 35604388, PMID 36982725, PMID 37056910.
  • Publication context: Transcriptional analysis of left-sided colitis, pancolitis, and ulcerative colitis-associated dysplasia.. Inflammatory bowel diseases, 2014. PMID 25358065. DOI 10.1097/MIB.0000000000000235.
  • Publication context: Identification of key genes and biological processes contributing to colitis associated dysplasia in ulcerative colitis.. PeerJ, 2021. PMID 33987007. DOI 10.7717/peerj.11321.
  • Publication context: Molecular Network Analyses Implicate Death-Associated Protein Kinase 3 (DAPK3) as a Key Factor in Colitis-Associated Dysplasia Progression.. Inflammatory bowel diseases, 2022. PMID 35604388. DOI 10.1093/ibd/izac098.
  • Publication context: 14 additional linked PubMed publications are available.

Cautions

  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

250 fields

Sample Group Preview

60 rows shown Show Hide
Study totals: Case 45 | Control 15 | Unassigned 0 | Excluded 0 | Ambiguous 0 60 rows shown
Group Role Accession Title Source / characteristics Reason
Ulcerative colitis Case GSM1162242 Colonics mucosal biopsy from dysplasia 1 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Ulcerative colitis-associated dysplasia Case marker detected.
Ulcerative colitis Case GSM1162243 Colonics mucosal biopsy from dysplasia 2 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Ulcerative colitis-associated dysplasia Case marker detected.
Ulcerative colitis Case GSM1162244 Colonics mucosal biopsy from dysplasia 3 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Ulcerative colitis-associated dysplasia Case marker detected.
Ulcerative colitis Case GSM1162245 Colonics mucosal biopsy from dysplasia 4 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Ulcerative colitis-associated dysplasia Case marker detected.
Ulcerative colitis Case GSM1162246 Colonics mucosal biopsy from dysplasia 5 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Ulcerative colitis-associated dysplasia Case marker detected.
Ulcerative colitis Case GSM1162247 Colonics mucosal biopsy from dysplasia 6 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Ulcerative colitis-associated dysplasia Case marker detected.
Left-sided coltis Case GSM1162248 Colonic mucosal biopsy from left-sided colitis 1 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162249 Colonic mucosal biopsy from left-sided colitis 2 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162250 Colonic mucosal biopsy from left-sided colitis 3 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162251 Colonic mucosal biopsy from left-sided colitis 4 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162252 Colonic mucosal biopsy from left-sided colitis 5 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162253 Colonic mucosal biopsy from left-sided colitis 6 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162254 Colonic mucosal biopsy from left-sided colitis 7 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162255 Colonic mucosal biopsy from left-sided colitis 8 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162256 Colonic mucosal biopsy from left-sided colitis 9 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162257 Colonic mucosal biopsy from left-sided colitis 10 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162258 Colonic mucosal biopsy from left-sided colitis 11 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162259 Colonic mucosal biopsy from left-sided colitis 12 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162260 Colonic mucosal biopsy from left-sided colitis 13 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162261 Colonic mucosal biopsy from left-sided colitis 14 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162262 Colonic mucosal biopsy from left-sided colitis 15 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162263 Colonic mucosal biopsy from left-sided colitis 16 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162264 Colonic mucosal biopsy from left-sided colitis 17 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162265 Colonic mucosal biopsy from left-sided colitis 18 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162266 Colonic mucosal biopsy from left-sided colitis 19 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Left-sided coltis Case GSM1162267 Colonic mucosal biopsy from left-sided colitis 20 Colonic mucosal biopsy from patient with left-sided coltis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Left-sided coltis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162268 Colonic mucosal biopsy from pancolitis 1 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162269 Colonic mucosal biopsy from pancolitis 2 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162270 Colonic mucosal biopsy from pancolitis 3 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162271 Colonic mucosal biopsy from pancolitis 4 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162272 Colonic mucosal biopsy from pancolitis 5 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162273 Colonic mucosal biopsy from pancolitis 6 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162274 Colonic mucosal biopsy from pancolitis 7 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162275 Colonic mucosal biopsy from pancolitis 8 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162276 Colonic mucosal biopsy from pancolitis 9 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162277 Colonic mucosal biopsy from pancolitis 10 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162278 Colonic mucosal biopsy from pancolitis 11 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162279 Colonic mucosal biopsy from pancolitis 12 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162280 Colonic mucosal biopsy from pancolitis 13 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162281 Colonic mucosal biopsy from pancolitis 14 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162282 Colonic mucosal biopsy from pancolitis 15 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162283 Colonic mucosal biopsy from pancolitis 16 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162284 Colonic mucosal biopsy from pancolitis 17 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162285 Colonic mucosal biopsy from pancolitis 18 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Pancolitis Case GSM1162286 Colonic mucosal biopsy from pancolitis 19 Colonic mucosal biopsy from patient with pancolitis Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Pancolitis Explicit characteristic comparison arm detected.
Control Control GSM1162227 Colonic mucosal biopsy from Control 1 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162228 Colonic mucosal biopsy from Control 2 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162229 Colonic mucosal biopsy from Control 3 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162230 Colonic mucosal biopsy from Control 4 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162231 Colonic mucosal biopsy from Control 5 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162232 Colonic mucosal biopsy from Control 6 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162233 Colonic mucosal biopsy from Control 7 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162234 Colonic mucosal biopsy from Control 8 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162235 Colonic mucosal biopsy from Control 9 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162236 Colonic mucosal biopsy from Control 10 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162237 Colonic mucosal biopsy from Control 11 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162238 Colonic mucosal biopsy from Control 12 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162239 Colonic mucosal biopsy from Control 13 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162240 Colonic mucosal biopsy from Control 14 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.
Control Control GSM1162241 Colonic mucosal biopsy from Control 15 Colonic mucosal biopsy from control individual Tissue: Colonic mucosal biopsy from the left side of the colon; Disease state: Control Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.