Matching samples

GSE47908 · Transcriptional analysis of left-sided colitis, pancolitis and ulcerative colitis-associated dysplasia

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

45 case / 15 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (60)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM1162227

Uncertain

colonic mucosal biopsy from Control 1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • colonic mucosal biopsy from Control 1 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
        • colonic mucosal biopsy from Control 1 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • colonic mucosal biopsy from Control 1 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
          • colonic mucosal biopsy from Control 1 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
        Source metadata
        Source name
        Colonic mucosal biopsy from control individual
        Characteristics
        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM1162227
sample_title: colonic mucosal biopsy from Control 1
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

        GSM1162228

        Uncertain

        colonic mucosal biopsy from Control 2

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • colonic mucosal biopsy from Control 2 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
              • colonic mucosal biopsy from Control 2 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • colonic mucosal biopsy from Control 2 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                • colonic mucosal biopsy from Control 2 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
              Source metadata
              Source name
              Colonic mucosal biopsy from control individual
              Characteristics
              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM1162228
sample_title: colonic mucosal biopsy from Control 2
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

              GSM1162229

              Uncertain

              colonic mucosal biopsy from Control 3

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • colonic mucosal biopsy from Control 3 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                    • colonic mucosal biopsy from Control 3 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • colonic mucosal biopsy from Control 3 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                      • colonic mucosal biopsy from Control 3 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                    Source metadata
                    Source name
                    Colonic mucosal biopsy from control individual
                    Characteristics
                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM1162229
sample_title: colonic mucosal biopsy from Control 3
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                    GSM1162230

                    Uncertain

                    colonic mucosal biopsy from Control 4

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • colonic mucosal biopsy from Control 4 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                          • colonic mucosal biopsy from Control 4 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • colonic mucosal biopsy from Control 4 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                            • colonic mucosal biopsy from Control 4 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                          Source metadata
                          Source name
                          Colonic mucosal biopsy from control individual
                          Characteristics
                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM1162230
sample_title: colonic mucosal biopsy from Control 4
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                          GSM1162231

                          Uncertain

                          colonic mucosal biopsy from Control 5

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • colonic mucosal biopsy from Control 5 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                • colonic mucosal biopsy from Control 5 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • colonic mucosal biopsy from Control 5 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                  • colonic mucosal biopsy from Control 5 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                Source metadata
                                Source name
                                Colonic mucosal biopsy from control individual
                                Characteristics
                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM1162231
sample_title: colonic mucosal biopsy from Control 5
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                GSM1162232

                                Uncertain

                                colonic mucosal biopsy from Control 6

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • colonic mucosal biopsy from Control 6 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                      • colonic mucosal biopsy from Control 6 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • colonic mucosal biopsy from Control 6 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                        • colonic mucosal biopsy from Control 6 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                      Source metadata
                                      Source name
                                      Colonic mucosal biopsy from control individual
                                      Characteristics
                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM1162232
sample_title: colonic mucosal biopsy from Control 6
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                      GSM1162233

                                      Uncertain

                                      colonic mucosal biopsy from Control 7

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • colonic mucosal biopsy from Control 7 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                            • colonic mucosal biopsy from Control 7 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • colonic mucosal biopsy from Control 7 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                              • colonic mucosal biopsy from Control 7 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                            Source metadata
                                            Source name
                                            Colonic mucosal biopsy from control individual
                                            Characteristics
                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM1162233
sample_title: colonic mucosal biopsy from Control 7
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                            GSM1162234

                                            Uncertain

                                            colonic mucosal biopsy from Control 8

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • colonic mucosal biopsy from Control 8 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                  • colonic mucosal biopsy from Control 8 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • colonic mucosal biopsy from Control 8 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                    • colonic mucosal biopsy from Control 8 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                  Source metadata
                                                  Source name
                                                  Colonic mucosal biopsy from control individual
                                                  Characteristics
                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM1162234
sample_title: colonic mucosal biopsy from Control 8
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                  GSM1162235

                                                  Uncertain

                                                  colonic mucosal biopsy from Control 9

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • colonic mucosal biopsy from Control 9 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                        • colonic mucosal biopsy from Control 9 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • colonic mucosal biopsy from Control 9 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                          • colonic mucosal biopsy from Control 9 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                        Source metadata
                                                        Source name
                                                        Colonic mucosal biopsy from control individual
                                                        Characteristics
                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM1162235
sample_title: colonic mucosal biopsy from Control 9
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                        GSM1162236

                                                        Uncertain

                                                        colonic mucosal biopsy from Control 10

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • colonic mucosal biopsy from Control 10 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                              • colonic mucosal biopsy from Control 10 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • colonic mucosal biopsy from Control 10 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                • colonic mucosal biopsy from Control 10 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                              Source metadata
                                                              Source name
                                                              Colonic mucosal biopsy from control individual
                                                              Characteristics
                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM1162236
sample_title: colonic mucosal biopsy from Control 10
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                              GSM1162237

                                                              Uncertain

                                                              colonic mucosal biopsy from Control 11

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • colonic mucosal biopsy from Control 11 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                    • colonic mucosal biopsy from Control 11 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • colonic mucosal biopsy from Control 11 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                      • colonic mucosal biopsy from Control 11 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                    Source metadata
                                                                    Source name
                                                                    Colonic mucosal biopsy from control individual
                                                                    Characteristics
                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM1162237
sample_title: colonic mucosal biopsy from Control 11
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                                    GSM1162238

                                                                    Uncertain

                                                                    colonic mucosal biopsy from Control 12

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • colonic mucosal biopsy from Control 12 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                          • colonic mucosal biopsy from Control 12 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • colonic mucosal biopsy from Control 12 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                            • colonic mucosal biopsy from Control 12 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                          Source metadata
                                                                          Source name
                                                                          Colonic mucosal biopsy from control individual
                                                                          Characteristics
                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM1162238
sample_title: colonic mucosal biopsy from Control 12
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                                          GSM1162239

                                                                          Uncertain

                                                                          colonic mucosal biopsy from Control 13

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • colonic mucosal biopsy from Control 13 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                • colonic mucosal biopsy from Control 13 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • colonic mucosal biopsy from Control 13 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                  • colonic mucosal biopsy from Control 13 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                Source metadata
                                                                                Source name
                                                                                Colonic mucosal biopsy from control individual
                                                                                Characteristics
                                                                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM1162239
sample_title: colonic mucosal biopsy from Control 13
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                                                GSM1162240

                                                                                Uncertain

                                                                                colonic mucosal biopsy from Control 14

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • colonic mucosal biopsy from Control 14 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                      • colonic mucosal biopsy from Control 14 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • colonic mucosal biopsy from Control 14 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                        • colonic mucosal biopsy from Control 14 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                      Source metadata
                                                                                      Source name
                                                                                      Colonic mucosal biopsy from control individual
                                                                                      Characteristics
                                                                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM1162240
sample_title: colonic mucosal biopsy from Control 14
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                                                      GSM1162241

                                                                                      Uncertain

                                                                                      colonic mucosal biopsy from Control 15

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • colonic mucosal biopsy from Control 15 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                            • colonic mucosal biopsy from Control 15 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • colonic mucosal biopsy from Control 15 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                              • colonic mucosal biopsy from Control 15 Colonic mucosal biopsy from control individual tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Colonic mucosal biopsy from control individual
                                                                                            Characteristics
                                                                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM1162241
sample_title: colonic mucosal biopsy from Control 15
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: control

                                                                                            GSM1162242

                                                                                            Uncertain

                                                                                            colonics mucosal biopsy from dysplasia 1

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • colonics mucosal biopsy from dysplasia 1 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                  • colonics mucosal biopsy from dysplasia 1 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • colonics mucosal biopsy from dysplasia 1 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                    • colonics mucosal biopsy from dysplasia 1 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
                                                                                                  Characteristics
                                                                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM1162242
sample_title: colonics mucosal biopsy from dysplasia 1
source_name: Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia

                                                                                                  GSM1162243

                                                                                                  Uncertain

                                                                                                  colonics mucosal biopsy from dysplasia 2

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • colonics mucosal biopsy from dysplasia 2 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                        • colonics mucosal biopsy from dysplasia 2 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • colonics mucosal biopsy from dysplasia 2 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                          • colonics mucosal biopsy from dysplasia 2 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
                                                                                                        Characteristics
                                                                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM1162243
sample_title: colonics mucosal biopsy from dysplasia 2
source_name: Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia

                                                                                                        GSM1162244

                                                                                                        Uncertain

                                                                                                        colonics mucosal biopsy from dysplasia 3

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • colonics mucosal biopsy from dysplasia 3 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                              • colonics mucosal biopsy from dysplasia 3 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • colonics mucosal biopsy from dysplasia 3 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                • colonics mucosal biopsy from dysplasia 3 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
                                                                                                              Characteristics
                                                                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM1162244
sample_title: colonics mucosal biopsy from dysplasia 3
source_name: Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia

                                                                                                              GSM1162245

                                                                                                              Uncertain

                                                                                                              colonics mucosal biopsy from dysplasia 4

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • colonics mucosal biopsy from dysplasia 4 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                    • colonics mucosal biopsy from dysplasia 4 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • colonics mucosal biopsy from dysplasia 4 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                      • colonics mucosal biopsy from dysplasia 4 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
                                                                                                                    Characteristics
                                                                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM1162245
sample_title: colonics mucosal biopsy from dysplasia 4
source_name: Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia

                                                                                                                    GSM1162246

                                                                                                                    Uncertain

                                                                                                                    colonics mucosal biopsy from dysplasia 5

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • colonics mucosal biopsy from dysplasia 5 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                          • colonics mucosal biopsy from dysplasia 5 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • colonics mucosal biopsy from dysplasia 5 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                            • colonics mucosal biopsy from dysplasia 5 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
                                                                                                                          Characteristics
                                                                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM1162246
sample_title: colonics mucosal biopsy from dysplasia 5
source_name: Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia

                                                                                                                          GSM1162247

                                                                                                                          Uncertain

                                                                                                                          colonics mucosal biopsy from dysplasia 6

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • colonics mucosal biopsy from dysplasia 6 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                                • colonics mucosal biopsy from dysplasia 6 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • colonics mucosal biopsy from dysplasia 6 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                                  • colonics mucosal biopsy from dysplasia 6 Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia tissue: Colonic mucosal biopsy from the left side of th...
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
                                                                                                                                Characteristics
                                                                                                                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM1162247
sample_title: colonics mucosal biopsy from dysplasia 6
source_name: Colonic mucosal biopsy from patient with ulcerative colitis-associated dysplasia
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: ulcerative colitis-associated dysplasia

                                                                                                                                GSM1162248

                                                                                                                                Uncertain

                                                                                                                                colonic mucosal biopsy from left-sided colitis 1

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 1 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 1 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 1 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 1 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                      Characteristics
                                                                                                                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM1162248
sample_title: colonic mucosal biopsy from left-sided colitis 1
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                      GSM1162249

                                                                                                                                      Uncertain

                                                                                                                                      colonic mucosal biopsy from left-sided colitis 2

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 2 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 2 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 2 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 2 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                            Characteristics
                                                                                                                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM1162249
sample_title: colonic mucosal biopsy from left-sided colitis 2
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                            GSM1162250

                                                                                                                                            Uncertain

                                                                                                                                            colonic mucosal biopsy from left-sided colitis 3

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 3 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 3 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 3 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 3 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                  Characteristics
                                                                                                                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM1162250
sample_title: colonic mucosal biopsy from left-sided colitis 3
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                  GSM1162251

                                                                                                                                                  Uncertain

                                                                                                                                                  colonic mucosal biopsy from left-sided colitis 4

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 4 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 4 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 4 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 4 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                        Characteristics
                                                                                                                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM1162251
sample_title: colonic mucosal biopsy from left-sided colitis 4
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                        GSM1162252

                                                                                                                                                        Uncertain

                                                                                                                                                        colonic mucosal biopsy from left-sided colitis 5

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 5 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 5 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 5 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 5 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                              Characteristics
                                                                                                                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM1162252
sample_title: colonic mucosal biopsy from left-sided colitis 5
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                              GSM1162253

                                                                                                                                                              Uncertain

                                                                                                                                                              colonic mucosal biopsy from left-sided colitis 6

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 6 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 6 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 6 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 6 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                    Characteristics
                                                                                                                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM1162253
sample_title: colonic mucosal biopsy from left-sided colitis 6
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                    GSM1162254

                                                                                                                                                                    Uncertain

                                                                                                                                                                    colonic mucosal biopsy from left-sided colitis 7

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 7 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 7 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 7 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 7 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                          Characteristics
                                                                                                                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM1162254
sample_title: colonic mucosal biopsy from left-sided colitis 7
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                          GSM1162255

                                                                                                                                                                          Uncertain

                                                                                                                                                                          colonic mucosal biopsy from left-sided colitis 8

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 8 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 8 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 8 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 8 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                Characteristics
                                                                                                                                                                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM1162255
sample_title: colonic mucosal biopsy from left-sided colitis 8
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                GSM1162256

                                                                                                                                                                                Uncertain

                                                                                                                                                                                colonic mucosal biopsy from left-sided colitis 9

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 9 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 9 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 9 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 9 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; disea...
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM1162256
sample_title: colonic mucosal biopsy from left-sided colitis 9
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                      GSM1162257

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      colonic mucosal biopsy from left-sided colitis 10

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 10 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 10 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 10 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 10 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM1162257
sample_title: colonic mucosal biopsy from left-sided colitis 10
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                            GSM1162258

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            colonic mucosal biopsy from left-sided colitis 11

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 11 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 11 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 11 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 11 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM1162258
sample_title: colonic mucosal biopsy from left-sided colitis 11
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                  GSM1162259

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  colonic mucosal biopsy from left-sided colitis 12

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 12 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 12 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 12 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 12 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM1162259
sample_title: colonic mucosal biopsy from left-sided colitis 12
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                        GSM1162260

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        colonic mucosal biopsy from left-sided colitis 13

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 13 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 13 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 13 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 13 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM1162260
sample_title: colonic mucosal biopsy from left-sided colitis 13
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                              GSM1162261

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              colonic mucosal biopsy from left-sided colitis 14

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 14 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 14 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 14 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 14 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM1162261
sample_title: colonic mucosal biopsy from left-sided colitis 14
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                    GSM1162262

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    colonic mucosal biopsy from left-sided colitis 15

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 15 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 15 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 15 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 15 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM1162262
sample_title: colonic mucosal biopsy from left-sided colitis 15
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                          GSM1162263

                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                          colonic mucosal biopsy from left-sided colitis 16

                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 16 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                • colonic mucosal biopsy from left-sided colitis 16 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 16 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 16 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM1162263
sample_title: colonic mucosal biopsy from left-sided colitis 16
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                                GSM1162264

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                colonic mucosal biopsy from left-sided colitis 17

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 17 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                      • colonic mucosal biopsy from left-sided colitis 17 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 17 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 17 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM1162264
sample_title: colonic mucosal biopsy from left-sided colitis 17
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                                      GSM1162265

                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                      colonic mucosal biopsy from left-sided colitis 18

                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 18 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                            • colonic mucosal biopsy from left-sided colitis 18 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 18 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                              • colonic mucosal biopsy from left-sided colitis 18 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM1162265
sample_title: colonic mucosal biopsy from left-sided colitis 18
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                                            GSM1162266

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            colonic mucosal biopsy from left-sided colitis 19

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 19 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                  • colonic mucosal biopsy from left-sided colitis 19 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 19 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                    • colonic mucosal biopsy from left-sided colitis 19 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM1162266
sample_title: colonic mucosal biopsy from left-sided colitis 19
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                                                  GSM1162267

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  colonic mucosal biopsy from left-sided colitis 20

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 20 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                        • colonic mucosal biopsy from left-sided colitis 20 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 20 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                          • colonic mucosal biopsy from left-sided colitis 20 Colonic mucosal biopsy from patient with left-sided coltis tissue: Colonic mucosal biopsy from the left side of the colon; dise...
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        Colonic mucosal biopsy from patient with left-sided coltis
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM1162267
sample_title: colonic mucosal biopsy from left-sided colitis 20
source_name: Colonic mucosal biopsy from patient with left-sided coltis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: left-sided coltis

                                                                                                                                                                                                                                                        GSM1162268

                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                        colonic mucosal biopsy from pancolitis 1

                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 1 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 1 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 1 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 1 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM1162268
sample_title: colonic mucosal biopsy from pancolitis 1
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                              GSM1162269

                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                              colonic mucosal biopsy from pancolitis 2

                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 2 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 2 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 2 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 2 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM1162269
sample_title: colonic mucosal biopsy from pancolitis 2
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                    GSM1162270

                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                    colonic mucosal biopsy from pancolitis 3

                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 3 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 3 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 3 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 3 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM1162270
sample_title: colonic mucosal biopsy from pancolitis 3
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                          GSM1162271

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          colonic mucosal biopsy from pancolitis 4

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 4 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 4 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 4 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 4 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM1162271
sample_title: colonic mucosal biopsy from pancolitis 4
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                GSM1162272

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                colonic mucosal biopsy from pancolitis 5

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 5 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 5 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 5 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 5 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM1162272
sample_title: colonic mucosal biopsy from pancolitis 5
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                      GSM1162273

                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                      colonic mucosal biopsy from pancolitis 6

                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 6 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 6 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 6 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 6 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM1162273
sample_title: colonic mucosal biopsy from pancolitis 6
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                            GSM1162274

                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                            colonic mucosal biopsy from pancolitis 7

                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 7 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 7 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 7 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 7 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM1162274
sample_title: colonic mucosal biopsy from pancolitis 7
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                  GSM1162275

                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                  colonic mucosal biopsy from pancolitis 8

                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 8 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 8 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 8 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 8 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM1162275
sample_title: colonic mucosal biopsy from pancolitis 8
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                        GSM1162276

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        colonic mucosal biopsy from pancolitis 9

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 9 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 9 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 9 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 9 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panco...
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM1162276
sample_title: colonic mucosal biopsy from pancolitis 9
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                              GSM1162277

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              colonic mucosal biopsy from pancolitis 10

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 10 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 10 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 10 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 10 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                    Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                    sample_accession: GSM1162277
sample_title: colonic mucosal biopsy from pancolitis 10
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                    GSM1162278

                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                    colonic mucosal biopsy from pancolitis 11

                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 11 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 11 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 11 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 11 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM1162278
sample_title: colonic mucosal biopsy from pancolitis 11
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                          GSM1162279

                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                          colonic mucosal biopsy from pancolitis 12

                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 12 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 12 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 12 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 12 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                sample_accession: GSM1162279
sample_title: colonic mucosal biopsy from pancolitis 12
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                GSM1162280

                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                colonic mucosal biopsy from pancolitis 13

                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 13 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 13 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 13 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 13 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM1162280
sample_title: colonic mucosal biopsy from pancolitis 13
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                      GSM1162281

                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                      colonic mucosal biopsy from pancolitis 14

                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 14 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 14 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 14 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 14 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM1162281
sample_title: colonic mucosal biopsy from pancolitis 14
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                            GSM1162282

                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                            colonic mucosal biopsy from pancolitis 15

                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 15 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                  • colonic mucosal biopsy from pancolitis 15 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 15 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 15 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                  Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                  tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM1162282
sample_title: colonic mucosal biopsy from pancolitis 15
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                                  GSM1162283

                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                  colonic mucosal biopsy from pancolitis 16

                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 16 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                        • colonic mucosal biopsy from pancolitis 16 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 16 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 16 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                        Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                        tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM1162283
sample_title: colonic mucosal biopsy from pancolitis 16
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                                        GSM1162284

                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                        colonic mucosal biopsy from pancolitis 17

                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 17 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                              • colonic mucosal biopsy from pancolitis 17 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 17 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                • colonic mucosal biopsy from pancolitis 17 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                              Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                              tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM1162284
sample_title: colonic mucosal biopsy from pancolitis 17
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                                              GSM1162285

                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                              colonic mucosal biopsy from pancolitis 18

                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 18 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                    • colonic mucosal biopsy from pancolitis 18 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 18 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                      • colonic mucosal biopsy from pancolitis 18 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                    Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                    tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM1162285
sample_title: colonic mucosal biopsy from pancolitis 18
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                                                    GSM1162286

                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                    colonic mucosal biopsy from pancolitis 19

                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 19 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                          • colonic mucosal biopsy from pancolitis 19 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 19 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                            • colonic mucosal biopsy from pancolitis 19 Colonic mucosal biopsy from patient with pancolitis tissue: Colonic mucosal biopsy from the left side of the colon; disease state: panc...
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          Colonic mucosal biopsy from patient with pancolitis
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM1162286
sample_title: colonic mucosal biopsy from pancolitis 19
source_name: Colonic mucosal biopsy from patient with pancolitis
characteristics: tissue: Colonic mucosal biopsy from the left side of the colon; disease state: pancolitis

                                                                                                                                                                                                                                                                                                                                                                          Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                          No excluded samples.