Matching samples

GSE48958 · Mucosal gene expression profiling in (un)inflamed colon of patients with ulcerative colitis (UC)

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

13 case / 8 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (21)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM1187602

Uncertain

control_1 [mRNA]

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • control_1 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
        • control_1 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • control_1 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
          • control_1 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
        Source metadata
        Source name
        colonic mucosal biopsy from control individual
        Characteristics
        tissue: colon; disease: control; disease activity: not applicable
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM1187602
sample_title: control_1 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

        GSM1187603

        Uncertain

        control_2 [mRNA]

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • control_2 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
              • control_2 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • control_2 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                • control_2 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
              Source metadata
              Source name
              colonic mucosal biopsy from control individual
              Characteristics
              tissue: colon; disease: control; disease activity: not applicable
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM1187603
sample_title: control_2 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

              GSM1187604

              Uncertain

              control_3 [mRNA]

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • control_3 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                    • control_3 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • control_3 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                      • control_3 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                    Source metadata
                    Source name
                    colonic mucosal biopsy from control individual
                    Characteristics
                    tissue: colon; disease: control; disease activity: not applicable
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM1187604
sample_title: control_3 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

                    GSM1187605

                    Uncertain

                    control_4 [mRNA]

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • control_4 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                          • control_4 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • control_4 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                            • control_4 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                          Source metadata
                          Source name
                          colonic mucosal biopsy from control individual
                          Characteristics
                          tissue: colon; disease: control; disease activity: not applicable
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM1187605
sample_title: control_4 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

                          GSM1187606

                          Uncertain

                          control_5 [mRNA]

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • control_5 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                • control_5 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • control_5 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                  • control_5 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                Source metadata
                                Source name
                                colonic mucosal biopsy from control individual
                                Characteristics
                                tissue: colon; disease: control; disease activity: not applicable
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM1187606
sample_title: control_5 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

                                GSM1187607

                                Uncertain

                                control_7 [mRNA]

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • control_7 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                      • control_7 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • control_7 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                        • control_7 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                      Source metadata
                                      Source name
                                      colonic mucosal biopsy from control individual
                                      Characteristics
                                      tissue: colon; disease: control; disease activity: not applicable
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM1187607
sample_title: control_7 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

                                      GSM1187608

                                      Uncertain

                                      control_8 [mRNA]

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • control_8 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                            • control_8 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • control_8 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                              • control_8 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                            Source metadata
                                            Source name
                                            colonic mucosal biopsy from control individual
                                            Characteristics
                                            tissue: colon; disease: control; disease activity: not applicable
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM1187608
sample_title: control_8 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

                                            GSM1187609

                                            Uncertain

                                            control_10 [mRNA]

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • control_10 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                                  • control_10 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • control_10 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                                    • control_10 [mRNA] colonic mucosal biopsy from control individual tissue: colon; disease: control; disease activity: not applicable
                                                  Source metadata
                                                  Source name
                                                  colonic mucosal biopsy from control individual
                                                  Characteristics
                                                  tissue: colon; disease: control; disease activity: not applicable
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM1187609
sample_title: control_10 [mRNA]
source_name: colonic mucosal biopsy from control individual
characteristics: tissue: colon; disease: control; disease activity: not applicable

                                                  GSM1187610

                                                  Uncertain

                                                  UC_active_1 [mRNA]

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • UC_active_1 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                        • UC_active_1 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • UC_active_1 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                          • UC_active_1 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                        Source metadata
                                                        Source name
                                                        colonic mucosal biopsy from UC patient with active disease
                                                        Characteristics
                                                        tissue: colon; disease: UC; disease activity: active
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM1187610
sample_title: UC_active_1 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                        GSM1187611

                                                        Uncertain

                                                        UC_active_2 [mRNA]

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • UC_active_2 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                              • UC_active_2 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • UC_active_2 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                • UC_active_2 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                              Source metadata
                                                              Source name
                                                              colonic mucosal biopsy from UC patient with active disease
                                                              Characteristics
                                                              tissue: colon; disease: UC; disease activity: active
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM1187611
sample_title: UC_active_2 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                              GSM1187612

                                                              Uncertain

                                                              UC_active_3 [mRNA]

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • UC_active_3 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                    • UC_active_3 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • UC_active_3 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                      • UC_active_3 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                    Source metadata
                                                                    Source name
                                                                    colonic mucosal biopsy from UC patient with active disease
                                                                    Characteristics
                                                                    tissue: colon; disease: UC; disease activity: active
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM1187612
sample_title: UC_active_3 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                                    GSM1187613

                                                                    Uncertain

                                                                    UC_active_4 [mRNA]

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • UC_active_4 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                          • UC_active_4 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • UC_active_4 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                            • UC_active_4 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                          Source metadata
                                                                          Source name
                                                                          colonic mucosal biopsy from UC patient with active disease
                                                                          Characteristics
                                                                          tissue: colon; disease: UC; disease activity: active
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM1187613
sample_title: UC_active_4 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                                          GSM1187614

                                                                          Uncertain

                                                                          UC_active_6 [mRNA]

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • UC_active_6 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                • UC_active_6 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • UC_active_6 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                  • UC_active_6 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                Source metadata
                                                                                Source name
                                                                                colonic mucosal biopsy from UC patient with active disease
                                                                                Characteristics
                                                                                tissue: colon; disease: UC; disease activity: active
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM1187614
sample_title: UC_active_6 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                                                GSM1187615

                                                                                Uncertain

                                                                                UC_active_7 [mRNA]

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • UC_active_7 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                      • UC_active_7 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • UC_active_7 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                        • UC_active_7 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                      Source metadata
                                                                                      Source name
                                                                                      colonic mucosal biopsy from UC patient with active disease
                                                                                      Characteristics
                                                                                      tissue: colon; disease: UC; disease activity: active
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM1187615
sample_title: UC_active_7 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                                                      GSM1187616

                                                                                      Uncertain

                                                                                      UC_active_9 [mRNA]

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • UC_active_9 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                            • UC_active_9 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • UC_active_9 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                              • UC_active_9 [mRNA] colonic mucosal biopsy from UC patient with active disease tissue: colon; disease: UC; disease activity: active
                                                                                            Source metadata
                                                                                            Source name
                                                                                            colonic mucosal biopsy from UC patient with active disease
                                                                                            Characteristics
                                                                                            tissue: colon; disease: UC; disease activity: active
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM1187616
sample_title: UC_active_9 [mRNA]
source_name: colonic mucosal biopsy from UC patient with active disease
characteristics: tissue: colon; disease: UC; disease activity: active

                                                                                            GSM1187617

                                                                                            Uncertain

                                                                                            UC_inactive_1 [mRNA]

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • UC_inactive_1 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                  • UC_inactive_1 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • UC_inactive_1 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                    • UC_inactive_1 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  colonic mucosal biopsy from UC patient with inactive disease
                                                                                                  Characteristics
                                                                                                  tissue: colon; disease: UC; disease activity: inactive
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM1187617
sample_title: UC_inactive_1 [mRNA]
source_name: colonic mucosal biopsy from UC patient with inactive disease
characteristics: tissue: colon; disease: UC; disease activity: inactive

                                                                                                  GSM1187618

                                                                                                  Uncertain

                                                                                                  UC_inactive_2 [mRNA]

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • UC_inactive_2 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                        • UC_inactive_2 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • UC_inactive_2 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                          • UC_inactive_2 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        colonic mucosal biopsy from UC patient with inactive disease
                                                                                                        Characteristics
                                                                                                        tissue: colon; disease: UC; disease activity: inactive
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM1187618
sample_title: UC_inactive_2 [mRNA]
source_name: colonic mucosal biopsy from UC patient with inactive disease
characteristics: tissue: colon; disease: UC; disease activity: inactive

                                                                                                        GSM1187619

                                                                                                        Uncertain

                                                                                                        UC_inactive_3 [mRNA]

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • UC_inactive_3 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                              • UC_inactive_3 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • UC_inactive_3 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                • UC_inactive_3 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              colonic mucosal biopsy from UC patient with inactive disease
                                                                                                              Characteristics
                                                                                                              tissue: colon; disease: UC; disease activity: inactive
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM1187619
sample_title: UC_inactive_3 [mRNA]
source_name: colonic mucosal biopsy from UC patient with inactive disease
characteristics: tissue: colon; disease: UC; disease activity: inactive

                                                                                                              GSM1187620

                                                                                                              Uncertain

                                                                                                              UC_inactive_4 [mRNA]

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • UC_inactive_4 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                    • UC_inactive_4 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • UC_inactive_4 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                      • UC_inactive_4 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    colonic mucosal biopsy from UC patient with inactive disease
                                                                                                                    Characteristics
                                                                                                                    tissue: colon; disease: UC; disease activity: inactive
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM1187620
sample_title: UC_inactive_4 [mRNA]
source_name: colonic mucosal biopsy from UC patient with inactive disease
characteristics: tissue: colon; disease: UC; disease activity: inactive

                                                                                                                    GSM1187621

                                                                                                                    Uncertain

                                                                                                                    UC_inactive_5 [mRNA]

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • UC_inactive_5 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                          • UC_inactive_5 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • UC_inactive_5 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                            • UC_inactive_5 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          colonic mucosal biopsy from UC patient with inactive disease
                                                                                                                          Characteristics
                                                                                                                          tissue: colon; disease: UC; disease activity: inactive
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM1187621
sample_title: UC_inactive_5 [mRNA]
source_name: colonic mucosal biopsy from UC patient with inactive disease
characteristics: tissue: colon; disease: UC; disease activity: inactive

                                                                                                                          GSM1187622

                                                                                                                          Uncertain

                                                                                                                          UC_inactive_6 [mRNA]

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • UC_inactive_6 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                                • UC_inactive_6 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • UC_inactive_6 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                                  • UC_inactive_6 [mRNA] colonic mucosal biopsy from UC patient with inactive disease tissue: colon; disease: UC; disease activity: inactive
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                colonic mucosal biopsy from UC patient with inactive disease
                                                                                                                                Characteristics
                                                                                                                                tissue: colon; disease: UC; disease activity: inactive
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM1187622
sample_title: UC_inactive_6 [mRNA]
source_name: colonic mucosal biopsy from UC patient with inactive disease
characteristics: tissue: colon; disease: UC; disease activity: inactive

                                                                                                                                Excluded samples (0)

                                                                                                                                No excluded samples.