Matching samples

GSE50788 · Pouch transcriptional differences between UC and FAP indicate altered immune response.

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

16 case / 20 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (36)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM1229209

Uncertain

3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
          • Supported by the indexed evidence.
          • specimen category excludes: Biofluid — Meets requirement
            • Supported by the indexed evidence.
            Source metadata
            Source name
            UC_pouch mucosa
            Characteristics
            condition: ulcerative colitis (UC); inflammation status: uninflamed
            Description
            Not reported
            Indexed organism evidence
            INFERRED · PARENT_INHERITED: Not reported
            Indexed assay evidence
            INFERRED · PARENT_INHERITED: Not reported
            Source
            GEO
            Original indexed metadata
            sample_accession: GSM1229209
            sample_title: 3
            source_name: UC_pouch mucosa
            characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

            GSM1229210

            Uncertain

            8

            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

            Requirements and decision evidence
            • organism: Homo sapiens — Insufficient evidence
              • The required value is not reported.
              • assay type: bulk RNA-seq — Insufficient evidence
                • The required value is not reported.
                • specimen category: Tissue or biopsy — Insufficient evidence
                  • The required value is not reported.
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Meets requirement
                      • Supported by the indexed evidence.
                      Source metadata
                      Source name
                      UC_pouch mucosa
                      Characteristics
                      condition: ulcerative colitis (UC); inflammation status: uninflamed
                      Description
                      Not reported
                      Indexed organism evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Indexed assay evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Source
                      GEO
                      Original indexed metadata
                      sample_accession: GSM1229210
                      sample_title: 8
                      source_name: UC_pouch mucosa
                      characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                      GSM1229211

                      Uncertain

                      12

                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                      Requirements and decision evidence
                      • organism: Homo sapiens — Insufficient evidence
                        • The required value is not reported.
                        • assay type: bulk RNA-seq — Insufficient evidence
                          • The required value is not reported.
                          • specimen category: Tissue or biopsy — Insufficient evidence
                            • The required value is not reported.
                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                              • Supported by the indexed evidence.
                              • specimen category excludes: Biofluid — Meets requirement
                                • Supported by the indexed evidence.
                                Source metadata
                                Source name
                                UC_pouch mucosa
                                Characteristics
                                condition: ulcerative colitis (UC); inflammation status: uninflamed
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM1229211
                                sample_title: 12
                                source_name: UC_pouch mucosa
                                characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                GSM1229212

                                Uncertain

                                15

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                        • Supported by the indexed evidence.
                                        • specimen category excludes: Biofluid — Meets requirement
                                          • Supported by the indexed evidence.
                                          Source metadata
                                          Source name
                                          UC_pouch mucosa
                                          Characteristics
                                          condition: ulcerative colitis (UC); inflammation status: uninflamed
                                          Description
                                          Not reported
                                          Indexed organism evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Indexed assay evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Source
                                          GEO
                                          Original indexed metadata
                                          sample_accession: GSM1229212
                                          sample_title: 15
                                          source_name: UC_pouch mucosa
                                          characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                          GSM1229213

                                          Uncertain

                                          16

                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                          Requirements and decision evidence
                                          • organism: Homo sapiens — Insufficient evidence
                                            • The required value is not reported.
                                            • assay type: bulk RNA-seq — Insufficient evidence
                                              • The required value is not reported.
                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                • The required value is not reported.
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Meets requirement
                                                    • Supported by the indexed evidence.
                                                    Source metadata
                                                    Source name
                                                    UC_pouch mucosa
                                                    Characteristics
                                                    condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                    Description
                                                    Not reported
                                                    Indexed organism evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Indexed assay evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Source
                                                    GEO
                                                    Original indexed metadata
                                                    sample_accession: GSM1229213
                                                    sample_title: 16
                                                    source_name: UC_pouch mucosa
                                                    characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                    GSM1229214

                                                    Uncertain

                                                    18

                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                    Requirements and decision evidence
                                                    • organism: Homo sapiens — Insufficient evidence
                                                      • The required value is not reported.
                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                        • The required value is not reported.
                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                          • The required value is not reported.
                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                            • Supported by the indexed evidence.
                                                            • specimen category excludes: Biofluid — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              Source metadata
                                                              Source name
                                                              UC_pouch mucosa
                                                              Characteristics
                                                              condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM1229214
                                                              sample_title: 18
                                                              source_name: UC_pouch mucosa
                                                              characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                              GSM1229215

                                                              Uncertain

                                                              25

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                      • Supported by the indexed evidence.
                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                        • Supported by the indexed evidence.
                                                                        Source metadata
                                                                        Source name
                                                                        UC_pouch mucosa
                                                                        Characteristics
                                                                        condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                        Description
                                                                        Not reported
                                                                        Indexed organism evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Indexed assay evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Source
                                                                        GEO
                                                                        Original indexed metadata
                                                                        sample_accession: GSM1229215
                                                                        sample_title: 25
                                                                        source_name: UC_pouch mucosa
                                                                        characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                        GSM1229216

                                                                        Uncertain

                                                                        21

                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                        Requirements and decision evidence
                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                  • Supported by the indexed evidence.
                                                                                  Source metadata
                                                                                  Source name
                                                                                  UC_pouch mucosa
                                                                                  Characteristics
                                                                                  condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                  Description
                                                                                  Not reported
                                                                                  Indexed organism evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Indexed assay evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Source
                                                                                  GEO
                                                                                  Original indexed metadata
                                                                                  sample_accession: GSM1229216
                                                                                  sample_title: 21
                                                                                  source_name: UC_pouch mucosa
                                                                                  characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                  GSM1229217

                                                                                  Uncertain

                                                                                  31

                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                  Requirements and decision evidence
                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                          • Supported by the indexed evidence.
                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            Source metadata
                                                                                            Source name
                                                                                            UC_pouch mucosa
                                                                                            Characteristics
                                                                                            condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM1229217
                                                                                            sample_title: 31
                                                                                            source_name: UC_pouch mucosa
                                                                                            characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                            GSM1229218

                                                                                            Uncertain

                                                                                            36

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                    • Supported by the indexed evidence.
                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                      • Supported by the indexed evidence.
                                                                                                      Source metadata
                                                                                                      Source name
                                                                                                      UC_pouch mucosa
                                                                                                      Characteristics
                                                                                                      condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                                      Description
                                                                                                      Not reported
                                                                                                      Indexed organism evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Indexed assay evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Source
                                                                                                      GEO
                                                                                                      Original indexed metadata
                                                                                                      sample_accession: GSM1229218
                                                                                                      sample_title: 36
                                                                                                      source_name: UC_pouch mucosa
                                                                                                      characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                                      GSM1229219

                                                                                                      Uncertain

                                                                                                      23

                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                      Requirements and decision evidence
                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                • Supported by the indexed evidence.
                                                                                                                Source metadata
                                                                                                                Source name
                                                                                                                UC_pouch mucosa
                                                                                                                Characteristics
                                                                                                                condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                                                Description
                                                                                                                Not reported
                                                                                                                Indexed organism evidence
                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                Indexed assay evidence
                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                Source
                                                                                                                GEO
                                                                                                                Original indexed metadata
                                                                                                                sample_accession: GSM1229219
                                                                                                                sample_title: 23
                                                                                                                source_name: UC_pouch mucosa
                                                                                                                characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                                                GSM1229220

                                                                                                                Uncertain

                                                                                                                40

                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                Requirements and decision evidence
                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                        • Supported by the indexed evidence.
                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          UC_pouch mucosa
                                                                                                                          Characteristics
                                                                                                                          condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM1229220
                                                                                                                          sample_title: 40
                                                                                                                          source_name: UC_pouch mucosa
                                                                                                                          characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                          GSM1229221

                                                                                                                          Uncertain

                                                                                                                          4

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                    Source metadata
                                                                                                                                    Source name
                                                                                                                                    UC_pouch mucosa
                                                                                                                                    Characteristics
                                                                                                                                    condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                    Description
                                                                                                                                    Not reported
                                                                                                                                    Indexed organism evidence
                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                    Indexed assay evidence
                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                    Source
                                                                                                                                    GEO
                                                                                                                                    Original indexed metadata
                                                                                                                                    sample_accession: GSM1229221
                                                                                                                                    sample_title: 4
                                                                                                                                    source_name: UC_pouch mucosa
                                                                                                                                    characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                    GSM1229222

                                                                                                                                    Uncertain

                                                                                                                                    5

                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                    Requirements and decision evidence
                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                              Source metadata
                                                                                                                                              Source name
                                                                                                                                              UC_pouch mucosa
                                                                                                                                              Characteristics
                                                                                                                                              condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                              Description
                                                                                                                                              Not reported
                                                                                                                                              Indexed organism evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Indexed assay evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Source
                                                                                                                                              GEO
                                                                                                                                              Original indexed metadata
                                                                                                                                              sample_accession: GSM1229222
                                                                                                                                              sample_title: 5
                                                                                                                                              source_name: UC_pouch mucosa
                                                                                                                                              characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                              GSM1229223

                                                                                                                                              Uncertain

                                                                                                                                              10

                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                              Requirements and decision evidence
                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        UC_pouch mucosa
                                                                                                                                                        Characteristics
                                                                                                                                                        condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM1229223
                                                                                                                                                        sample_title: 10
                                                                                                                                                        source_name: UC_pouch mucosa
                                                                                                                                                        characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                        GSM1229224

                                                                                                                                                        Uncertain

                                                                                                                                                        11

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                  Source metadata
                                                                                                                                                                  Source name
                                                                                                                                                                  UC_pouch mucosa
                                                                                                                                                                  Characteristics
                                                                                                                                                                  condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                  Description
                                                                                                                                                                  Not reported
                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Source
                                                                                                                                                                  GEO
                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                  sample_accession: GSM1229224
                                                                                                                                                                  sample_title: 11
                                                                                                                                                                  source_name: UC_pouch mucosa
                                                                                                                                                                  characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                  GSM1229225

                                                                                                                                                                  Uncertain

                                                                                                                                                                  17

                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                            Source metadata
                                                                                                                                                                            Source name
                                                                                                                                                                            UC_pouch mucosa
                                                                                                                                                                            Characteristics
                                                                                                                                                                            condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                            Description
                                                                                                                                                                            Not reported
                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                            Source
                                                                                                                                                                            GEO
                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                            sample_accession: GSM1229225
                                                                                                                                                                            sample_title: 17
                                                                                                                                                                            source_name: UC_pouch mucosa
                                                                                                                                                                            characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                            GSM1229226

                                                                                                                                                                            Uncertain

                                                                                                                                                                            38

                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      UC_pouch mucosa
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM1229226
                                                                                                                                                                                      sample_title: 38
                                                                                                                                                                                      source_name: UC_pouch mucosa
                                                                                                                                                                                      characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                                                                                                                      GSM1229227

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      32

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                Source name
                                                                                                                                                                                                UC_pouch mucosa
                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                                                                                                                                Description
                                                                                                                                                                                                Not reported
                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                Source
                                                                                                                                                                                                GEO
                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                sample_accession: GSM1229227
                                                                                                                                                                                                sample_title: 32
                                                                                                                                                                                                source_name: UC_pouch mucosa
                                                                                                                                                                                                characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                                                                                                                                GSM1229228

                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                35

                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                          Source name
                                                                                                                                                                                                          UC_pouch mucosa
                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                          condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                                                                                                                                          Description
                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                          Source
                                                                                                                                                                                                          GEO
                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                          sample_accession: GSM1229228
                                                                                                                                                                                                          sample_title: 35
                                                                                                                                                                                                          source_name: UC_pouch mucosa
                                                                                                                                                                                                          characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                                                                                                                                          GSM1229229

                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                          43

                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    UC_pouch mucosa
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    condition: ulcerative colitis (UC); inflammation status: uninflamed
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM1229229
                                                                                                                                                                                                                    sample_title: 43
                                                                                                                                                                                                                    source_name: UC_pouch mucosa
                                                                                                                                                                                                                    characteristics: condition: ulcerative colitis (UC); inflammation status: uninflamed

                                                                                                                                                                                                                    GSM1229230

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    26

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                              UC_pouch mucosa
                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                              condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                              sample_accession: GSM1229230
                                                                                                                                                                                                                              sample_title: 26
                                                                                                                                                                                                                              source_name: UC_pouch mucosa
                                                                                                                                                                                                                              characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                              GSM1229231

                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                              29

                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                        UC_pouch mucosa
                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                        condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                        sample_accession: GSM1229231
                                                                                                                                                                                                                                        sample_title: 29
                                                                                                                                                                                                                                        source_name: UC_pouch mucosa
                                                                                                                                                                                                                                        characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                                        GSM1229232

                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                        41

                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  UC_pouch mucosa
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM1229232
                                                                                                                                                                                                                                                  sample_title: 41
                                                                                                                                                                                                                                                  source_name: UC_pouch mucosa
                                                                                                                                                                                                                                                  characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                                                  GSM1229233

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  42

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                            UC_pouch mucosa
                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                            condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                            sample_accession: GSM1229233
                                                                                                                                                                                                                                                            sample_title: 42
                                                                                                                                                                                                                                                            source_name: UC_pouch mucosa
                                                                                                                                                                                                                                                            characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                                                            GSM1229234

                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                            49

                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                      UC_pouch mucosa
                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                      condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                      sample_accession: GSM1229234
                                                                                                                                                                                                                                                                      sample_title: 49
                                                                                                                                                                                                                                                                      source_name: UC_pouch mucosa
                                                                                                                                                                                                                                                                      characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                                                                      GSM1229235

                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                      24

                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                UC_pouch mucosa
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM1229235
                                                                                                                                                                                                                                                                                sample_title: 24
                                                                                                                                                                                                                                                                                source_name: UC_pouch mucosa
                                                                                                                                                                                                                                                                                characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                                                                                GSM1229236

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                7

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                          UC_pouch mucosa
                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                          condition: ulcerative colitis (UC); inflammation status: inflamed
                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                          sample_accession: GSM1229236
                                                                                                                                                                                                                                                                                          sample_title: 7
                                                                                                                                                                                                                                                                                          source_name: UC_pouch mucosa
                                                                                                                                                                                                                                                                                          characteristics: condition: ulcerative colitis (UC); inflammation status: inflamed

                                                                                                                                                                                                                                                                                          GSM1229237

                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                          13

                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                    FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                    condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed
                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                    sample_accession: GSM1229237
                                                                                                                                                                                                                                                                                                    sample_title: 13
                                                                                                                                                                                                                                                                                                    source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                    characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed

                                                                                                                                                                                                                                                                                                    GSM1229238

                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                    14

                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM1229238
                                                                                                                                                                                                                                                                                                              sample_title: 14
                                                                                                                                                                                                                                                                                                              source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                              characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed

                                                                                                                                                                                                                                                                                                              GSM1229239

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              19

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                        FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                        condition: familial adenomatous polyposis (FAP); inflammation status: inflamed
                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                        sample_accession: GSM1229239
                                                                                                                                                                                                                                                                                                                        sample_title: 19
                                                                                                                                                                                                                                                                                                                        source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                        characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: inflamed

                                                                                                                                                                                                                                                                                                                        GSM1229240

                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                        22

                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                  FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                  condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed
                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM1229240
                                                                                                                                                                                                                                                                                                                                  sample_title: 22
                                                                                                                                                                                                                                                                                                                                  source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                  characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed

                                                                                                                                                                                                                                                                                                                                  GSM1229241

                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                  37

                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM1229241
                                                                                                                                                                                                                                                                                                                                            sample_title: 37
                                                                                                                                                                                                                                                                                                                                            source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                            characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed

                                                                                                                                                                                                                                                                                                                                            GSM1229242

                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                            44

                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Control marker detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                      FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                      condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed
                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM1229242
                                                                                                                                                                                                                                                                                                                                                      sample_title: 44
                                                                                                                                                                                                                                                                                                                                                      source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                                      characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: uninflamed

                                                                                                                                                                                                                                                                                                                                                      GSM1229243

                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                      45

                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                condition: familial adenomatous polyposis (FAP); inflammation status: inflamed
                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM1229243
                                                                                                                                                                                                                                                                                                                                                                sample_title: 45
                                                                                                                                                                                                                                                                                                                                                                source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                                                characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: inflamed

                                                                                                                                                                                                                                                                                                                                                                GSM1229244

                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                46

                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          condition: familial adenomatous polyposis (FAP); inflammation status: inflamed
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM1229244
                                                                                                                                                                                                                                                                                                                                                                          sample_title: 46
                                                                                                                                                                                                                                                                                                                                                                          source_name: FAP_pouch mucosa
                                                                                                                                                                                                                                                                                                                                                                          characteristics: condition: familial adenomatous polyposis (FAP); inflammation status: inflamed

                                                                                                                                                                                                                                                                                                                                                                          Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                          No excluded samples.