Differential Gene Expression between Active and Quiescent Stages of Ulcerative Colitis: Insights into a Distinctive Pathogenesis Profile

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

28 case / 12 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 40 samples
Specimen: Tissue
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Zhao X, Cheadle C
Contact name: Xinmei Zhao
Submission date: 2013-12-13
Last update: 2017-12-22
Organization: Johns Hopkins U
Department: Division allergy and clinical immunology
Public date: 2014-12-12
Experiment types: Expression profiling by array
Platforms: GPL14951 Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip
Series type: Series
SubSeries: Not available
BioProject: PRJNA231677

Summary

Our objective was to elucidate patterns of gene expression underlying the progression of UC disease. Single endoscopic pinch biopsies (n=40) were assayed using the Illumina cDNA-mediated Annealing, Selection, Extension, and Ligation (DASL) microarray. Tissue was sampled in consecutive active and quiescent stages at the same site in individual UC patients, and these stages (active and inactive) were compared with each other as well as to non-inflammatory bowel disease (non-IBD) healthy controls.

Overall design

Gene expression of UC active and inactive is compared at a global level using total RNA from the same UC pateints using the Illumina microarray platform.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 40 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 10 linked publications 10 DOIs Primary publication Mobilization of epithelial mesenchymal transition genes distinguishes active from inactive lesional tissue in patients with ulcerative colitis. Human molecular genetics, 2015 PubMed DOI Related publications Identification and Validation of the Diagnostic Markers for Inflammatory Bowel Disease by Bioinformatics Analysis and Machine Learning. Biochemical genetics, 2024 PubMed DOI Identification and validation of GNA15 as a novel diagnostic biomarker in ulcerative colitis. Journal of molecular histology, 2026 PubMed DOI Exploring Pyroptosis-related Signature Genes and Potential Drugs in Ulcerative Colitis by Transcriptome Data and Animal Experimental Validation. Inflammation, 2024 PubMed DOI Identification of useful genes from multiple microarrays for ulcerative colitis diagnosis based on machine learning methods. Scientific reports, 2022 PubMed DOI Identification of immune-related hub genes contributing to the pathogenesis, diagnosis, and remission of ulcerative colitis by integrated bioinformatic analyses. Medicine, 2023 PubMed DOI Supplementation of Glucosamine Selenium Ameliorates DSS-Induced Chronic Colitis in Mice via Affecting Gut Microbiota, Inhibiting Pyroptosis and Inactivating Chemokine Signaling Pathway. Journal of inflammation research, 2025 PubMed DOI Analysis of cuproptosis-related genes in Ulcerative colitis and immunological characterization based on machine learning. Frontiers in medicine, 2023 PubMed DOI Identification of Pharmacological Autophagy Regulators of Active Ulcerative Colitis. Frontiers in pharmacology, 2021 PubMed DOI Integrating Transcriptomics and Machine Learning to Uncover the FLI1-PARP14-Immune Axis in Ulcerative Colitis Activity and Pathogenesis. Genes, 2025 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Ulcerative colitis 28 samples
Likely control group Healthy control 12 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Tissue. Comparison suitability: 0%.
Interpreted disease metadata: Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 10 publications; 10 DOIs available: PMID 26034135, PMID 34925026, PMID 35705632, PMID 37351719, PMID 37529244.
Publication context: Mobilization of epithelial mesenchymal transition genes distinguishes active from inactive lesional tissue in patients with ulcerative colitis.. Human molecular genetics, 2015. PMID 26034135. DOI 10.1093/hmg/ddv192.
Publication context: Identification of Pharmacological Autophagy Regulators of Active Ulcerative Colitis.. Frontiers in pharmacology, 2021. PMID 34925026. DOI 10.3389/fphar.2021.769718.
Publication context: Identification of useful genes from multiple microarrays for ulcerative colitis diagnosis based on machine learning methods.. Scientific reports, 2022. PMID 35705632. DOI 10.1038/s41598-022-14048-6.
Publication context: 7 additional linked PubMed publications are available.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

148 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM1289168 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289169 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289170 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289171 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289172 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289173 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289174 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289175 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289176 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289177 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289178 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289179 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289180 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289181 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289182 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289191 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289194 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon tissue sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289206 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1289207 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE53306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE53306 dataset_title: Differential Gene Expression between Active and Quiescent Stages of Ulcerative Colitis: Insights into a Distinctive Pathogenesis Profi... keyword match keyword match: microarray

control_type healthy control GSM1289196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_1 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_2 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_3 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_4 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_5 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_6 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_7 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_8 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_9 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_10 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289206 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_11 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM1289207 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_12 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary control type match: healthy control

disease inflammatory bowel disease GSE53306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel disease dataset_accession: GSE53306 dataset_title: Differential Gene Expression between Active and Quiescent Stages of Ulcerative Colitis: Insights into a Distinctive Pathogenesis Profi... controlled vocabulary controlled vocabulary disease match: inflammatory bowel disease

disease ulcerative colitis GSE53306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE53306 dataset_title: Differential Gene Expression between Active and Quiescent Stages of Ulcerative Colitis: Insights into a Distinctive Pathogenesis Profi... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289168 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_1 Colon tissue patient: UC patient #1; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289169 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_2 Colon tissue patient: UC patient #2; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289170 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_4 Colon tissue patient: UC patient #4; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289171 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_5 Colon tissue patient: UC patient #5; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289172 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_6 Colon tissue patient: UC patient #6; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289173 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_7 Colon tissue patient: UC patient #7; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289174 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_8 Colon tissue patient: UC patient #8; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289175 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_9 Colon tissue patient: UC patient #9; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289176 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_10 Colon tissue patient: UC patient #10; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289177 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_11-1 Colon tissue patient: UC patient #11; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289178 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_11-2 Colon tissue patient: UC patient #11 (same site, post-relapse); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289179 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_12-1 Colon tissue patient: UC patient #12; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289180 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_12-2 Colon tissue patient: UC patient #12 (same site, post-relapse); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289181 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_13-1 Colon tissue patient: UC patient #13; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289182 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_13-2 Colon tissue patient: UC patient #13 (same site, post-relapse); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289183 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_active_13-3 Colon tissue patient: UC patient #13 (same site, post-relapse2); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_1 Colon tissue patient: UC patient #1 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_2 Colon tissue patient: UC patient #2 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_4 Colon tissue patient: UC patient #4 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_5 Colon tissue patient: UC patient #5 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_6 Colon tissue patient: UC patient #6 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_7 Colon tissue patient: UC patient #7 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_8 Colon tissue patient: UC patient #8 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289191 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_9 Colon tissue patient: UC patient #9 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_10 Colon tissue patient: UC patient #10 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_11 Colon tissue patient: UC patient #11 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289194 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_13-1 Colon tissue patient: UC patient #13 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1289195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC_inactive_13-2 Colon tissue patient: UC patient #13 (same site, remission2); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary disease match: ulcerative colitis

normal_tissue_type healthy donor tissue GSM1289196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_1 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_2 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_3 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_4 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_5 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_6 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_7 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_8 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_9 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_10 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289206 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_11 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM1289207 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Normal_control_12 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

organism Homo sapiens GSE53306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE53306 dataset_title: Differential Gene Expression between Active and Quiescent Stages of Ulcerative Colitis: Insights into a Distinctive Pathogenesis Profi... keyword match keyword match: homo sapiens

sample_type normal tissue GSM1289196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_1 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_2 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_3 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_4 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_5 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_6 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_7 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_8 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_9 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_10 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289206 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_11 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1289207 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_12 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary sample type match: normal

tissue colon GSM1289168 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_1 Colon tissue patient: UC patient #1; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289169 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_2 Colon tissue patient: UC patient #2; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289170 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_4 Colon tissue patient: UC patient #4; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289171 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_5 Colon tissue patient: UC patient #5; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289172 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_6 Colon tissue patient: UC patient #6; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289173 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_7 Colon tissue patient: UC patient #7; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289174 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_8 Colon tissue patient: UC patient #8; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289175 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_9 Colon tissue patient: UC patient #9; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289176 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_10 Colon tissue patient: UC patient #10; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289177 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_11-1 Colon tissue patient: UC patient #11; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289178 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_11-2 Colon tissue patient: UC patient #11 (same site, post-relapse); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289179 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_12-1 Colon tissue patient: UC patient #12; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289180 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_12-2 Colon tissue patient: UC patient #12 (same site, post-relapse); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289181 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_13-1 Colon tissue patient: UC patient #13; disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289182 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_13-2 Colon tissue patient: UC patient #13 (same site, post-relapse); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289183 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_active_13-3 Colon tissue patient: UC patient #13 (same site, post-relapse2); disease state: ulcerative colitis active controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289184 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_1 Colon tissue patient: UC patient #1 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289185 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_2 Colon tissue patient: UC patient #2 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289186 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_4 Colon tissue patient: UC patient #4 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289187 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_5 Colon tissue patient: UC patient #5 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289188 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_6 Colon tissue patient: UC patient #6 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289189 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_7 Colon tissue patient: UC patient #7 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289190 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_8 Colon tissue patient: UC patient #8 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289191 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_9 Colon tissue patient: UC patient #9 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289192 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_10 Colon tissue patient: UC patient #10 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289193 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_11 Colon tissue patient: UC patient #11 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289194 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_13-1 Colon tissue patient: UC patient #13 (same site, remission); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289195 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon UC_inactive_13-2 Colon tissue patient: UC patient #13 (same site, remission2); disease state: ulcerative colitis inactive controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_1 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_2 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_3 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_4 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_5 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_6 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_7 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_8 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_9 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_10 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289206 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_11 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1289207 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal_control_12 Colon tissue tissue: colon; disease state: healthy control controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

40 rows shown Show Hide

Study totals: Case 28 | Control 12 | Unassigned 0 | Excluded 0 | Ambiguous 0 40 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Ulcerative colitis	Case	GSM1289168	UC_active_1	Colon tissue Patient: UC patient #1; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289169	UC_active_2	Colon tissue Patient: UC patient #2; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289170	UC_active_4	Colon tissue Patient: UC patient #4; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289171	UC_active_5	Colon tissue Patient: UC patient #5; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289172	UC_active_6	Colon tissue Patient: UC patient #6; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289173	UC_active_7	Colon tissue Patient: UC patient #7; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289174	UC_active_8	Colon tissue Patient: UC patient #8; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289175	UC_active_9	Colon tissue Patient: UC patient #9; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289176	UC_active_10	Colon tissue Patient: UC patient #10; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289177	UC_active_11-1	Colon tissue Patient: UC patient #11; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289178	UC_active_11-2	Colon tissue Patient: UC patient #11 (same site, post-relapse); Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289179	UC_active_12-1	Colon tissue Patient: UC patient #12; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289180	UC_active_12-2	Colon tissue Patient: UC patient #12 (same site, post-relapse); Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289181	UC_active_13-1	Colon tissue Patient: UC patient #13; Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289182	UC_active_13-2	Colon tissue Patient: UC patient #13 (same site, post-relapse); Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289183	UC_active_13-3	Colon tissue Patient: UC patient #13 (same site, post-relapse2); Disease state: Ulcerative colitis active	Case marker detected.
Ulcerative colitis	Case	GSM1289184	UC_inactive_1	Colon tissue Patient: UC patient #1 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289185	UC_inactive_2	Colon tissue Patient: UC patient #2 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289186	UC_inactive_4	Colon tissue Patient: UC patient #4 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289187	UC_inactive_5	Colon tissue Patient: UC patient #5 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289188	UC_inactive_6	Colon tissue Patient: UC patient #6 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289189	UC_inactive_7	Colon tissue Patient: UC patient #7 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289190	UC_inactive_8	Colon tissue Patient: UC patient #8 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289191	UC_inactive_9	Colon tissue Patient: UC patient #9 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289192	UC_inactive_10	Colon tissue Patient: UC patient #10 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289193	UC_inactive_11	Colon tissue Patient: UC patient #11 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289194	UC_inactive_13-1	Colon tissue Patient: UC patient #13 (same site, remission); Disease state: Ulcerative colitis inactive	Case marker detected.
Ulcerative colitis	Case	GSM1289195	UC_inactive_13-2	Colon tissue Patient: UC patient #13 (same site, remission2); Disease state: Ulcerative colitis inactive	Case marker detected.
Healthy control	Control	GSM1289196	Normal_control_1	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289197	Normal_control_2	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289198	Normal_control_3	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289199	Normal_control_4	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289200	Normal_control_5	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289201	Normal_control_6	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289202	Normal_control_7	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289203	Normal_control_8	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289204	Normal_control_9	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289205	Normal_control_10	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289206	Normal_control_11	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM1289207	Normal_control_12	Colon tissue Tissue: Colon; Disease state: Healthy control	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

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Source Evidence

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Applied Review Decisions

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Supporting evidence

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Use as Discovery Cohort