mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq]

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

27 case / 14 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 41 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Sheikh SZ, Sethupathy P, Furey TS, Peck BC, Weiser M, Peck B
Contact name: Bailey Peck
Submission date: 2015-02-23
Last update: 2019-05-15
Organization: University of North Carolina at Chapel Hill
Department: Genetics
Public date: 2015-07-15
Experiment types: Non-coding RNA profiling by high throughput sequencing
Platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Series type: SubSeries
SubSeries: Not available
BioProject: PRJNA276115

Summary

There is a need for reliable prognostic markers that can guide therapeutic intervention in Crohn’s disease (CD). We examined whether different behavioral phenotypes in CD can be classified based on colonic miRNA or mRNA expression and if miRNAs have prognostic utility for CD. We perform high-throughput sequencing of small RNA and mRNA isolated from colon tissue from CD patients and non-IBD (NIBD) controls. To identify miRNA and genes associated with specific behavioral phenotypes of CD, patients were stratified according to disease behavior (non-stricturing, non-penetrating; stricturing; penetrating) and compared miRNA profiles in each class with those of the NIBD group. Using a novel statistical simulation approach applied to colonic RNA-seq data for CD patients and NIBD controls, we identify at drivers of gene expression profiles associated with CD.

Overall design

Macroscopically non-inflamed colon tissue from characterized Crohn's disease patients and normal controls were obtained. Small RNA-seq and RNA-seq were performed on these samples. Additionally, we investigated the effect of inflammation on miRNA expression by performing small RNA-seq on matched colon samples obtained from macroscopically inflamed regions from a subset (six) of these patients with CD.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 41 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility. Inflammatory bowel diseases, 2015 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

Secondary RNA assay context should be analyzed separately from ordinary bulk RNA-seq.

Next Steps

Review blockers and update sample grouping or dataset selection before analysis.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Crohn's disease, colorectal cancer, inflammatory bowel disease Disease context came from Normalization rules.
Likely case group Inflamed tissue 27 samples
Likely control group Mixed controls 14 samples

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Colorectal cancer, Crohn's disease, Inflammatory bowel disease.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 26164662.
Publication context: MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility.. Inflammatory bowel diseases, 2015. PMID 26164662. DOI 10.1097/MIB.0000000000000478.

Cautions

Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Small RNA, miRNA, circRNA, or extracellular-vesicle RNA context downgraded for primary mRNA tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because secondary RNA assays are not primary mRNA tissue RNA-seq.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Multiple sample type labels or exclusion flags were detected.
Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.

Normalized Fields

185 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM1616945 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616946 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616947 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616948 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616951 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616952 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616953 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616954 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616955 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616956 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616957 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616958 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616959 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616960 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616961 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616962 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616963 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616964 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616965 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616966 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616967 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616968 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616969 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616970 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616971 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616972 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616973 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616974 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616975 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616976 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616977 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616978 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616979 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616980 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616981 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616982 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616983 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616984 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1616985 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon sample-anatomical-source-v1 sample-local anatomical source

assay_type bulk RNA-seq GSE66208 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE66208 dataset_title: mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq] organism: Homo sapiens assay_type: bulk RNA-seq processed_data... keyword match keyword match: bulk rna-seq

collection_method biopsy GSM1616945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1616947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf... controlled vocabulary controlled vocabulary collection method match: biopsy

control_type healthy control GSM1616954 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence normal control Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI] Colon age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; infl... controlled vocabulary controlled vocabulary control type match: normal control

disease Crohn's disease GSE66208 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE66208 dataset_title: mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq] organism: Homo sapiens assay_type: bulk RNA-seq processed_data... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease inflammatory bowel disease GSE66208 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE66208 dataset_title: mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq] organism: Homo sapiens assay_type: bulk RNA-seq processed_data... controlled vocabulary controlled vocabulary disease match: ibd

disease colorectal cancer GSM1616946 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon cancer Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Hartmann reversal after colon c... controlled vocabulary controlled vocabulary disease match: colon cancer

disease colorectal cancer GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon cancer Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;... controlled vocabulary controlled vocabulary disease match: colon cancer

disease colorectal cancer GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon cancer Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf... controlled vocabulary controlled vocabulary disease match: colon cancer

disease colorectal cancer GSM1616951 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon cancer Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary disease match: colon cancer

disease colorectal cancer GSM1616953 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon cancer Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary disease match: colon cancer

disease Crohn's disease GSM1616959 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2] Colon age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616960 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2] Colon age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616961 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3] Colon age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616962 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1] Colon age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616963 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3] Colon age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616964 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1] Colon age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616965 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1] Colon age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616966 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2] Colon age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616967 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2] Colon age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616968 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3] Colon age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616969 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1] Colon age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616970 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1] Colon age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616971 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1] Colon age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetratin... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616972 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3] Colon age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616973 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2] Colon age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616974 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3] Colon age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616975 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2] Colon age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616976 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1] Colon age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616977 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3] Colon age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616978 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1] Colon age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616979 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3] Colon age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616980 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3] Colon age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inf... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616981 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1] Colon age: 23; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616982 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1] Colon age: 32; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616983 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1] Colon age: 20; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616984 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3] Colon age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; infla... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1616985 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2] Colon age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; infla... controlled vocabulary controlled vocabulary disease match: Crohn's disease

organism Homo sapiens GSE66208 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE66208 dataset_title: mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq] organism: Homo sapiens assay_type: bulk RNA-seq processed_data... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM1616945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1616947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf... controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type inflamed tissue GSM1616945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616946 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Hartmann reversal after colon c... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616946 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Hartmann reversal after colon c... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616948 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI] Colon age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflam... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616948 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI] Colon age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflam... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616951 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616951 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616952 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI] Colon age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemor... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616952 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI] Colon age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemor... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616953 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616953 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616954 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI] Colon age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; infl... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616954 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI] Colon age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; infl... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616955 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI] Colon age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; ... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616955 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI] Colon age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616956 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI] Colon age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montre... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616956 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI] Colon age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montre... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616957 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI] Colon age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montre... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616957 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI] Colon age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montre... controlled vocabulary controlled vocabulary sample type match: normal

sample_type inflamed tissue GSM1616958 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI] Colon age: 49; Sex: female; disease: Normal, SI Neuroendocri... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type normal tissue GSM1616958 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI] Colon age: 49; Sex: female; disease: Normal, SI Neuroendocri... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample GSM1616958 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence tumor Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI] Colon age: 49; Sex: female; disease: Normal, SI Neuroendocri... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type inflamed tissue GSM1616959 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2] Colon age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification:... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616960 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2] Colon age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616961 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3] Colon age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616962 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1] Colon age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616963 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3] Colon age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616964 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1] Colon age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616965 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1] Colon age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616966 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2] Colon age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616967 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2] Colon age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616968 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3] Colon age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616969 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1] Colon age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616970 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1] Colon age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616971 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1] Colon age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetratin... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616972 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3] Colon age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616973 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2] Colon age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616974 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3] Colon age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616975 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2] Colon age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616976 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1] Colon age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616977 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3] Colon age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616978 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1] Colon age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616979 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3] Colon age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616980 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3] Colon age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inf... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616981 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1] Colon age: 23; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616982 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1] Colon age: 32; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616983 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1] Colon age: 20; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616984 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3] Colon age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; infla... controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM1616985 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2] Colon age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; infla... controlled vocabulary controlled vocabulary sample type match: inflamed

tissue colon GSE66208 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE66208 dataset_title: mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq] organism: Homo sapiens assay_type: bulk RNA-seq processed_data... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616946 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Hartmann reversal after colon c... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616948 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI] Colon age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflam... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616951 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616952 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI] Colon age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemor... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616953 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI] Colon age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616954 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI] Colon age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; infl... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616955 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI] Colon age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616956 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI] Colon age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montre... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616957 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI] Colon age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montre... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616958 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI] Colon age: 49; Sex: female; disease: Normal, SI Neuroendocri... controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM1616958 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence intestine Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI] Colon age: 49; Sex: female; disease: Normal, SI Neuroendocri... controlled vocabulary controlled vocabulary tissue match: intestine

tissue colon GSM1616959 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2] Colon age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification:... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616960 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2] Colon age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616961 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3] Colon age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616962 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1] Colon age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616963 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3] Colon age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616964 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1] Colon age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616965 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1] Colon age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616966 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2] Colon age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616967 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2] Colon age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616968 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3] Colon age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616969 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1] Colon age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616970 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1] Colon age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrat... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616971 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1] Colon age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetratin... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616972 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3] Colon age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616973 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2] Colon age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616974 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3] Colon age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificati... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616975 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2] Colon age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616976 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1] Colon age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616977 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3] Colon age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616978 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1] Colon age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616979 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3] Colon age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classificatio... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616980 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3] Colon age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inf... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616981 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1] Colon age: 23; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616982 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1] Colon age: 32; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616983 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1] Colon age: 20; Sex: female; disease: Crohn's Disease; disease_stage... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616984 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3] Colon age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; infla... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1616985 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2] Colon age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; infla... controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

41 rows shown Show Hide

Study totals: Case 27 | Control 14 | Unassigned 0 | Excluded 0 | Ambiguous 0 41 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Inflamed tissue	Case	GSM1616959	B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2]	Colon Age: 15; Sex: Male; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: No; Montreal classification: A1L1B2	Case marker detected.
Inflamed tissue	Case	GSM1616960	B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2]	Colon Age: 51; Sex: Female; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: No; Montreal classification: A2L2B2	Case marker detected.
Inflamed tissue	Case	GSM1616961	B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3]	Colon Age: 59; Sex: Female; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L3B3	Case marker detected.
Inflamed tissue	Case	GSM1616962	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1]	Colon Age: 56; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A2L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616963	B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3]	Colon Age: 43; Sex: Female; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L2B3p	Case marker detected.
Inflamed tissue	Case	GSM1616964	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1]	Colon Age: 23; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A2L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616965	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1]	Colon Age: 32; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A2L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616966	B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2]	Colon Age: 37; Sex: Female; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: No; Montreal classification: A2L2B2p	Case marker detected.
Inflamed tissue	Case	GSM1616967	B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2]	Colon Age: 21; Sex: Female; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: No; Montreal classification: A1L3B2	Case marker detected.
Inflamed tissue	Case	GSM1616968	B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3]	Colon Age: 34; Sex: Male; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L3B3	Case marker detected.
Inflamed tissue	Case	GSM1616969	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1]	Colon Age: 25; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A2L3B1	Case marker detected.
Inflamed tissue	Case	GSM1616970	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1]	Colon Age: 20; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A1L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616971	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1]	Colon Age: 29; Sex: Male; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A2L3B1	Case marker detected.
Inflamed tissue	Case	GSM1616972	B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3]	Colon Age: 31; Sex: Male; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L3B3	Case marker detected.
Inflamed tissue	Case	GSM1616973	B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2]	Colon Age: 76; Sex: Male; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: No; Montreal classification: A2L3B2	Case marker detected.
Inflamed tissue	Case	GSM1616974	B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3]	Colon Age: 28; Sex: Female; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L1B3	Case marker detected.
Inflamed tissue	Case	GSM1616975	B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2]	Colon Age: 30; Sex: Female; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: No; Montreal classification: A2L3B2	Case marker detected.
Inflamed tissue	Case	GSM1616976	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1]	Colon Age: 20; Sex: Male; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A1L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616977	B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3]	Colon Age: 45; Sex: Female; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L3B3	Case marker detected.
Inflamed tissue	Case	GSM1616978	B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1]	Colon Age: 49; Sex: Male; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: No; Montreal classification: A1L3B1	Case marker detected.
Inflamed tissue	Case	GSM1616979	B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3]	Colon Age: 49; Sex: Female; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: No; Montreal classification: A2L3B3	Case marker detected.
Inflamed tissue	Case	GSM1616980	Inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3]	Colon Age: 43; Sex: Female; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: Yes; Montreal classification: A2L2B3p	Case marker detected.
Inflamed tissue	Case	GSM1616981	Inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1]	Colon Age: 23; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: Yes; Montreal classification: A2L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616982	Inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1]	Colon Age: 32; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: Yes; Montreal classification: A2L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616983	Inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1]	Colon Age: 20; Sex: Female; Disease: Crohn's Disease; Disease_stage: B1/non-strictuing, non-penetrating; Inflamed: Yes; Montreal classification: A1L2B1	Case marker detected.
Inflamed tissue	Case	GSM1616984	Inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3]	Colon Age: 31; Sex: Male; Disease: Crohn's Disease; Disease_stage: B3/penetrating; Inflamed: Yes; Montreal classification: A2L3B3	Case marker detected.
Inflamed tissue	Case	GSM1616985	Inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2]	Colon Age: 76; Sex: Male; Disease: Crohn's Disease; Disease_stage: B2/stricturing; Inflamed: Yes; Montreal classification: A2L3B2	Case marker detected.
Normal tissue	Control	GSM1616945	Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI]	Colon Age: 53; Sex: Female; Disease: Normal; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616946	Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI]	Colon Age: 52; Sex: Male; Disease: Normal, Hartmann reversal after colon cancer; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616947	Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI]	Colon Age: 60; Sex: Female; Disease: Normal, diverticulitis; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616948	Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI]	Colon Age: 70; Sex: Male; Disease: Normal, diverticulitis; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616949	Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI]	Colon Age: 82; Sex: Female; Disease: Normal, Colon cancer; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616950	Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI]	Colon Age: 44; Sex: Male; Disease: Normal, Colon cancer; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616951	Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI]	Colon Age: 44; Sex: Male; Disease: Normal, Colon cancer; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616952	Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI]	Colon Age: 41; Sex: Female; Disease: Normal, colonic inertia, TI submucosal hemorrhage (but looked inflamed on macro); Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616953	Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI]	Colon Age: 52; Sex: Male; Disease: Normal, Colon cancer; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Healthy control	Control	GSM1616954	Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI]	Colon Age: 65; Sex: Male; Disease: Normal control, large polyp; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616955	Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI]	Colon Age: 45; Sex: Female; Disease: Normal, colonic inertia; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616956	Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI]	Colon Age: 70; Sex: Male; Disease: Normal, Adenoma; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616957	Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI]	Colon Age: 62; Sex: Male; Disease: Normal, Adenoma; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.
Normal tissue	Control	GSM1616958	Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI]	Colon Age: 49; Sex: Female; Disease: Normal, SI Neuroendocrine tumor; Disease_stage: NA; Inflamed: No; Montreal classification: NA	Sample-local control marker detected.

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Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

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Use as Discovery Cohort