Matching samples

GSE66208 · mRNA and small RNA associated with Crohn's disease behavior [ncRNA-Seq]

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

27 case / 14 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (41)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM1616945

Uncertain

Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI]

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
        • Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
          • Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
        Source metadata
        Source name
        Colon
        Characteristics
        age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM1616945
        sample_title: Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI]
        source_name: Colon
        characteristics: age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA

        GSM1616946

        Uncertain

        Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI]

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                • Supported by the indexed evidence.
                • specimen category excludes: Biofluid — Meets requirement
                  • Supported by the indexed evidence.
                  Source metadata
                  Source name
                  Colon
                  Characteristics
                  age: 52; Sex: male; disease: Normal, Hartmann reversal after colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
                  Description
                  Not reported
                  Indexed organism evidence
                  INFERRED · PARENT_INHERITED: Not reported
                  Indexed assay evidence
                  INFERRED · PARENT_INHERITED: Not reported
                  Source
                  GEO
                  Original indexed metadata
                  sample_accession: GSM1616946
                  sample_title: Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI]
                  source_name: Colon
                  characteristics: age: 52; Sex: male; disease: Normal, Hartmann reversal after colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA

                  GSM1616947

                  Uncertain

                  Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI]

                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                  Requirements and decision evidence
                  • organism: Homo sapiens — Insufficient evidence
                    • The required value is not reported.
                    • assay type: bulk RNA-seq — Insufficient evidence
                      • The required value is not reported.
                      • specimen category: Tissue or biopsy — Insufficient evidence
                        • The required value is not reported.
                        • Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
                        • Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                        • Supported by the indexed evidence.
                        • specimen category excludes: Biofluid — Insufficient evidence
                          • The required value is not reported.
                          • Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
                          • Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
                        Source metadata
                        Source name
                        Colon
                        Characteristics
                        age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA
                        Description
                        Not reported
                        Indexed organism evidence
                        INFERRED · PARENT_INHERITED: Not reported
                        Indexed assay evidence
                        INFERRED · PARENT_INHERITED: Not reported
                        Source
                        GEO
                        Original indexed metadata
                        sample_accession: GSM1616947
                        sample_title: Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI]
                        source_name: Colon
                        characteristics: age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA

                        GSM1616948

                        Uncertain

                        Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI]

                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                        Requirements and decision evidence
                        • organism: Homo sapiens — Insufficient evidence
                          • The required value is not reported.
                          • assay type: bulk RNA-seq — Insufficient evidence
                            • The required value is not reported.
                            • specimen category: Tissue or biopsy — Insufficient evidence
                              • The required value is not reported.
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Meets requirement
                                  • Supported by the indexed evidence.
                                  Source metadata
                                  Source name
                                  Colon
                                  Characteristics
                                  age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA
                                  Description
                                  Not reported
                                  Indexed organism evidence
                                  INFERRED · PARENT_INHERITED: Not reported
                                  Indexed assay evidence
                                  INFERRED · PARENT_INHERITED: Not reported
                                  Source
                                  GEO
                                  Original indexed metadata
                                  sample_accession: GSM1616948
                                  sample_title: Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI]
                                  source_name: Colon
                                  characteristics: age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA

                                  GSM1616949

                                  Uncertain

                                  Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI]

                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                  Requirements and decision evidence
                                  • organism: Homo sapiens — Insufficient evidence
                                    • The required value is not reported.
                                    • assay type: bulk RNA-seq — Insufficient evidence
                                      • The required value is not reported.
                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                        • The required value is not reported.
                                        • Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
                                        • Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                        • Supported by the indexed evidence.
                                        • specimen category excludes: Biofluid — Insufficient evidence
                                          • The required value is not reported.
                                          • Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
                                          • Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
                                        Source metadata
                                        Source name
                                        Colon
                                        Characteristics
                                        age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
                                        Description
                                        Not reported
                                        Indexed organism evidence
                                        INFERRED · PARENT_INHERITED: Not reported
                                        Indexed assay evidence
                                        INFERRED · PARENT_INHERITED: Not reported
                                        Source
                                        GEO
                                        Original indexed metadata
                                        sample_accession: GSM1616949
                                        sample_title: Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI]
                                        source_name: Colon
                                        characteristics: age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA

                                        GSM1616950

                                        Uncertain

                                        Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI]

                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                        Requirements and decision evidence
                                        • organism: Homo sapiens — Insufficient evidence
                                          • The required value is not reported.
                                          • assay type: bulk RNA-seq — Insufficient evidence
                                            • The required value is not reported.
                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                              • The required value is not reported.
                                              • Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
                                              • Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                              • Supported by the indexed evidence.
                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                • The required value is not reported.
                                                • Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
                                                • Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
                                              Source metadata
                                              Source name
                                              Colon
                                              Characteristics
                                              age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
                                              Description
                                              Not reported
                                              Indexed organism evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Indexed assay evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Source
                                              GEO
                                              Original indexed metadata
                                              sample_accession: GSM1616950
                                              sample_title: Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI]
                                              source_name: Colon
                                              characteristics: age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA

                                              GSM1616951

                                              Uncertain

                                              Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI]

                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                              Requirements and decision evidence
                                              • organism: Homo sapiens — Insufficient evidence
                                                • The required value is not reported.
                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                  • The required value is not reported.
                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                    • The required value is not reported.
                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                      • Supported by the indexed evidence.
                                                      • specimen category excludes: Biofluid — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        Source metadata
                                                        Source name
                                                        Colon
                                                        Characteristics
                                                        age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM1616951
                                                        sample_title: Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI]
                                                        source_name: Colon
                                                        characteristics: age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA

                                                        GSM1616952

                                                        Uncertain

                                                        Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI]

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                • Supported by the indexed evidence.
                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                  • Supported by the indexed evidence.
                                                                  Source metadata
                                                                  Source name
                                                                  Colon
                                                                  Characteristics
                                                                  age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemorrhage (but looked inflamed on macro); disease_stage: NA; inflamed: No; montreal classification: NA
                                                                  Description
                                                                  Not reported
                                                                  Indexed organism evidence
                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                  Indexed assay evidence
                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                  Source
                                                                  GEO
                                                                  Original indexed metadata
                                                                  sample_accession: GSM1616952
                                                                  sample_title: Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI]
                                                                  source_name: Colon
                                                                  characteristics: age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemorrhage (but looked inflamed on macro); disease_stage: NA; inflamed: No; montreal classification: NA

                                                                  GSM1616953

                                                                  Uncertain

                                                                  Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI]

                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                  Requirements and decision evidence
                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                            • Supported by the indexed evidence.
                                                                            Source metadata
                                                                            Source name
                                                                            Colon
                                                                            Characteristics
                                                                            age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
                                                                            Description
                                                                            Not reported
                                                                            Indexed organism evidence
                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                            Indexed assay evidence
                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                            Source
                                                                            GEO
                                                                            Original indexed metadata
                                                                            sample_accession: GSM1616953
                                                                            sample_title: Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI]
                                                                            source_name: Colon
                                                                            characteristics: age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA

                                                                            GSM1616954

                                                                            Uncertain

                                                                            Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI]

                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                            Requirements and decision evidence
                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                    • Supported by the indexed evidence.
                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      Source metadata
                                                                                      Source name
                                                                                      Colon
                                                                                      Characteristics
                                                                                      age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; inflamed: No; montreal classification: NA
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM1616954
                                                                                      sample_title: Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI]
                                                                                      source_name: Colon
                                                                                      characteristics: age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; inflamed: No; montreal classification: NA

                                                                                      GSM1616955

                                                                                      Uncertain

                                                                                      Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI]

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                              • Supported by the indexed evidence.
                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                • Supported by the indexed evidence.
                                                                                                Source metadata
                                                                                                Source name
                                                                                                Colon
                                                                                                Characteristics
                                                                                                age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; inflamed: No; montreal classification: NA
                                                                                                Description
                                                                                                Not reported
                                                                                                Indexed organism evidence
                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                Indexed assay evidence
                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                Source
                                                                                                GEO
                                                                                                Original indexed metadata
                                                                                                sample_accession: GSM1616955
                                                                                                sample_title: Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI]
                                                                                                source_name: Colon
                                                                                                characteristics: age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; inflamed: No; montreal classification: NA

                                                                                                GSM1616956

                                                                                                Uncertain

                                                                                                Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI]

                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                Requirements and decision evidence
                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                          • Supported by the indexed evidence.
                                                                                                          Source metadata
                                                                                                          Source name
                                                                                                          Colon
                                                                                                          Characteristics
                                                                                                          age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA
                                                                                                          Description
                                                                                                          Not reported
                                                                                                          Indexed organism evidence
                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                          Indexed assay evidence
                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                          Source
                                                                                                          GEO
                                                                                                          Original indexed metadata
                                                                                                          sample_accession: GSM1616956
                                                                                                          sample_title: Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI]
                                                                                                          source_name: Colon
                                                                                                          characteristics: age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA

                                                                                                          GSM1616957

                                                                                                          Uncertain

                                                                                                          Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI]

                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                          Requirements and decision evidence
                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                  • Supported by the indexed evidence.
                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    Colon
                                                                                                                    Characteristics
                                                                                                                    age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM1616957
                                                                                                                    sample_title: Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI]
                                                                                                                    source_name: Colon
                                                                                                                    characteristics: age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA

                                                                                                                    GSM1616958

                                                                                                                    Uncertain

                                                                                                                    Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI]

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                            • Supported by the indexed evidence.
                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                              • Supported by the indexed evidence.
                                                                                                                              Source metadata
                                                                                                                              Source name
                                                                                                                              Colon
                                                                                                                              Characteristics
                                                                                                                              age: 49; Sex: female; disease: Normal, SI Neuroendocrine tumor; disease_stage: NA; inflamed: No; montreal classification: NA
                                                                                                                              Description
                                                                                                                              Not reported
                                                                                                                              Indexed organism evidence
                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                              Indexed assay evidence
                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                              Source
                                                                                                                              GEO
                                                                                                                              Original indexed metadata
                                                                                                                              sample_accession: GSM1616958
                                                                                                                              sample_title: Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI]
                                                                                                                              source_name: Colon
                                                                                                                              characteristics: age: 49; Sex: female; disease: Normal, SI Neuroendocrine tumor; disease_stage: NA; inflamed: No; montreal classification: NA

                                                                                                                              GSM1616959

                                                                                                                              Uncertain

                                                                                                                              B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2]

                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                              Requirements and decision evidence
                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                        Source metadata
                                                                                                                                        Source name
                                                                                                                                        Colon
                                                                                                                                        Characteristics
                                                                                                                                        age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L1B2
                                                                                                                                        Description
                                                                                                                                        Not reported
                                                                                                                                        Indexed organism evidence
                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                        Indexed assay evidence
                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                        Source
                                                                                                                                        GEO
                                                                                                                                        Original indexed metadata
                                                                                                                                        sample_accession: GSM1616959
                                                                                                                                        sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2]
                                                                                                                                        source_name: Colon
                                                                                                                                        characteristics: age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L1B2

                                                                                                                                        GSM1616960

                                                                                                                                        Uncertain

                                                                                                                                        B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2]

                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                        Requirements and decision evidence
                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  Colon
                                                                                                                                                  Characteristics
                                                                                                                                                  age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM1616960
                                                                                                                                                  sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2]
                                                                                                                                                  source_name: Colon
                                                                                                                                                  characteristics: age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2

                                                                                                                                                  GSM1616961

                                                                                                                                                  Uncertain

                                                                                                                                                  B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3]

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                            Source metadata
                                                                                                                                                            Source name
                                                                                                                                                            Colon
                                                                                                                                                            Characteristics
                                                                                                                                                            age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
                                                                                                                                                            Description
                                                                                                                                                            Not reported
                                                                                                                                                            Indexed organism evidence
                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                            Indexed assay evidence
                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                            Source
                                                                                                                                                            GEO
                                                                                                                                                            Original indexed metadata
                                                                                                                                                            sample_accession: GSM1616961
                                                                                                                                                            sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3]
                                                                                                                                                            source_name: Colon
                                                                                                                                                            characteristics: age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3

                                                                                                                                                            GSM1616962

                                                                                                                                                            Uncertain

                                                                                                                                                            B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1]

                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                      Source metadata
                                                                                                                                                                      Source name
                                                                                                                                                                      Colon
                                                                                                                                                                      Characteristics
                                                                                                                                                                      age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
                                                                                                                                                                      Description
                                                                                                                                                                      Not reported
                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                      Source
                                                                                                                                                                      GEO
                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                      sample_accession: GSM1616962
                                                                                                                                                                      sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1]
                                                                                                                                                                      source_name: Colon
                                                                                                                                                                      characteristics: age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1

                                                                                                                                                                      GSM1616963

                                                                                                                                                                      Uncertain

                                                                                                                                                                      B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3]

                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                Colon
                                                                                                                                                                                Characteristics
                                                                                                                                                                                age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L2B3p
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM1616963
                                                                                                                                                                                sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3]
                                                                                                                                                                                source_name: Colon
                                                                                                                                                                                characteristics: age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L2B3p

                                                                                                                                                                                GSM1616964

                                                                                                                                                                                Uncertain

                                                                                                                                                                                B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1]

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                          Source metadata
                                                                                                                                                                                          Source name
                                                                                                                                                                                          Colon
                                                                                                                                                                                          Characteristics
                                                                                                                                                                                          age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
                                                                                                                                                                                          Description
                                                                                                                                                                                          Not reported
                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                          Source
                                                                                                                                                                                          GEO
                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                          sample_accession: GSM1616964
                                                                                                                                                                                          sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1]
                                                                                                                                                                                          source_name: Colon
                                                                                                                                                                                          characteristics: age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1

                                                                                                                                                                                          GSM1616965

                                                                                                                                                                                          Uncertain

                                                                                                                                                                                          B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1]

                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                    Source name
                                                                                                                                                                                                    Colon
                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                    age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
                                                                                                                                                                                                    Description
                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                    Source
                                                                                                                                                                                                    GEO
                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                    sample_accession: GSM1616965
                                                                                                                                                                                                    sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1]
                                                                                                                                                                                                    source_name: Colon
                                                                                                                                                                                                    characteristics: age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1

                                                                                                                                                                                                    GSM1616966

                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                    B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2]

                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              Colon
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2p
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM1616966
                                                                                                                                                                                                              sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2]
                                                                                                                                                                                                              source_name: Colon
                                                                                                                                                                                                              characteristics: age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2p

                                                                                                                                                                                                              GSM1616967

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2]

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                        Colon
                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                        age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L3B2
                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                        sample_accession: GSM1616967
                                                                                                                                                                                                                        sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2]
                                                                                                                                                                                                                        source_name: Colon
                                                                                                                                                                                                                        characteristics: age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L3B2

                                                                                                                                                                                                                        GSM1616968

                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                        B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3]

                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                  Colon
                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                  age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                  sample_accession: GSM1616968
                                                                                                                                                                                                                                  sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3]
                                                                                                                                                                                                                                  source_name: Colon
                                                                                                                                                                                                                                  characteristics: age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3

                                                                                                                                                                                                                                  GSM1616969

                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                  B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1]

                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            Colon
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM1616969
                                                                                                                                                                                                                                            sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1]
                                                                                                                                                                                                                                            source_name: Colon
                                                                                                                                                                                                                                            characteristics: age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1

                                                                                                                                                                                                                                            GSM1616970

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1]

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                      Colon
                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                      age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1
                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                      sample_accession: GSM1616970
                                                                                                                                                                                                                                                      sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1]
                                                                                                                                                                                                                                                      source_name: Colon
                                                                                                                                                                                                                                                      characteristics: age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1

                                                                                                                                                                                                                                                      GSM1616971

                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                      B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1]

                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                Colon
                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1
                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                sample_accession: GSM1616971
                                                                                                                                                                                                                                                                sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1]
                                                                                                                                                                                                                                                                source_name: Colon
                                                                                                                                                                                                                                                                characteristics: age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1

                                                                                                                                                                                                                                                                GSM1616972

                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3]

                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          Colon
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM1616972
                                                                                                                                                                                                                                                                          sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3]
                                                                                                                                                                                                                                                                          source_name: Colon
                                                                                                                                                                                                                                                                          characteristics: age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3

                                                                                                                                                                                                                                                                          GSM1616973

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2]

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                    Colon
                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                    age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2
                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                    sample_accession: GSM1616973
                                                                                                                                                                                                                                                                                    sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2]
                                                                                                                                                                                                                                                                                    source_name: Colon
                                                                                                                                                                                                                                                                                    characteristics: age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2

                                                                                                                                                                                                                                                                                    GSM1616974

                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                    B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3]

                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                              Colon
                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                              age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L1B3
                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                              sample_accession: GSM1616974
                                                                                                                                                                                                                                                                                              sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3]
                                                                                                                                                                                                                                                                                              source_name: Colon
                                                                                                                                                                                                                                                                                              characteristics: age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L1B3

                                                                                                                                                                                                                                                                                              GSM1616975

                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                              B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2]

                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        Colon
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM1616975
                                                                                                                                                                                                                                                                                                        sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2]
                                                                                                                                                                                                                                                                                                        source_name: Colon
                                                                                                                                                                                                                                                                                                        characteristics: age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2

                                                                                                                                                                                                                                                                                                        GSM1616976

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1]

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                  Colon
                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                  age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1
                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                  sample_accession: GSM1616976
                                                                                                                                                                                                                                                                                                                  sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1]
                                                                                                                                                                                                                                                                                                                  source_name: Colon
                                                                                                                                                                                                                                                                                                                  characteristics: age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1

                                                                                                                                                                                                                                                                                                                  GSM1616977

                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                  B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3]

                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                            Colon
                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                            age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                            sample_accession: GSM1616977
                                                                                                                                                                                                                                                                                                                            sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3]
                                                                                                                                                                                                                                                                                                                            source_name: Colon
                                                                                                                                                                                                                                                                                                                            characteristics: age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3

                                                                                                                                                                                                                                                                                                                            GSM1616978

                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                            B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1]

                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      Colon
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L3B1
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM1616978
                                                                                                                                                                                                                                                                                                                                      sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1]
                                                                                                                                                                                                                                                                                                                                      source_name: Colon
                                                                                                                                                                                                                                                                                                                                      characteristics: age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L3B1

                                                                                                                                                                                                                                                                                                                                      GSM1616979

                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                      B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3]

                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                Colon
                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM1616979
                                                                                                                                                                                                                                                                                                                                                sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3]
                                                                                                                                                                                                                                                                                                                                                source_name: Colon
                                                                                                                                                                                                                                                                                                                                                characteristics: age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3

                                                                                                                                                                                                                                                                                                                                                GSM1616980

                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3]

                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                          Colon
                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                          age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L2B3p
                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM1616980
                                                                                                                                                                                                                                                                                                                                                          sample_title: inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3]
                                                                                                                                                                                                                                                                                                                                                          source_name: Colon
                                                                                                                                                                                                                                                                                                                                                          characteristics: age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L2B3p

                                                                                                                                                                                                                                                                                                                                                          GSM1616981

                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                          inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1]

                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                    Colon
                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                    age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1
                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM1616981
                                                                                                                                                                                                                                                                                                                                                                    sample_title: inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1]
                                                                                                                                                                                                                                                                                                                                                                    source_name: Colon
                                                                                                                                                                                                                                                                                                                                                                    characteristics: age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1

                                                                                                                                                                                                                                                                                                                                                                    GSM1616982

                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                    inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1]

                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                              Colon
                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                              age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1
                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM1616982
                                                                                                                                                                                                                                                                                                                                                                              sample_title: inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1]
                                                                                                                                                                                                                                                                                                                                                                              source_name: Colon
                                                                                                                                                                                                                                                                                                                                                                              characteristics: age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1

                                                                                                                                                                                                                                                                                                                                                                              GSM1616983

                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                              inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1]

                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                        Colon
                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                        age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A1L2B1
                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM1616983
                                                                                                                                                                                                                                                                                                                                                                                        sample_title: inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1]
                                                                                                                                                                                                                                                                                                                                                                                        source_name: Colon
                                                                                                                                                                                                                                                                                                                                                                                        characteristics: age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A1L2B1

                                                                                                                                                                                                                                                                                                                                                                                        GSM1616984

                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                        inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3]

                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                  Colon
                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                  age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L3B3
                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM1616984
                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3]
                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Colon
                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L3B3

                                                                                                                                                                                                                                                                                                                                                                                                  GSM1616985

                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                  inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2]

                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                            Colon
                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                            age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: Yes; montreal classification: A2L3B2
                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM1616985
                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2]
                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Colon
                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: Yes; montreal classification: A2L3B2

                                                                                                                                                                                                                                                                                                                                                                                                            Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                                                            No excluded samples.