These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
- Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
- Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI] Colon age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
Source metadata
- Source name
- Colon
- Characteristics
- age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616945
sample_title: Normal colon biopsy, female age 53 [ncRNA-Seq, 22_NIBD_NI]
source_name: Colon
characteristics: age: 53; Sex: female; disease: Normal; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 52; Sex: male; disease: Normal, Hartmann reversal after colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616946
sample_title: Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [ncRNA-Seq, 23_NIBD_NI]
source_name: Colon
characteristics: age: 52; Sex: male; disease: Normal, Hartmann reversal after colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
- Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
- Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI] Colon age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: ...
Source metadata
- Source name
- Colon
- Characteristics
- age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616947
sample_title: Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [ncRNA-Seq, 25_NIBD_NI]
source_name: Colon
characteristics: age: 60; Sex: female; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616948
sample_title: Normal colon acquired during surgery for diverticulitis, male age 70 [ncRNA-Seq, 27_NIBD_NI]
source_name: Colon
characteristics: age: 70; Sex: male; disease: Normal, diverticulitis; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
- Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
- Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI] Colon age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA;...
Source metadata
- Source name
- Colon
- Characteristics
- age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616949
sample_title: Normal colon biopsy acquired during surgery for colon cancer, female age 82 [ncRNA-Seq, 30_NIBD_NI]
source_name: Colon
characteristics: age: 82; Sex: female; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
- Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
- Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI] Colon age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inf...
Source metadata
- Source name
- Colon
- Characteristics
- age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616950
sample_title: Normal colon biopsy acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 31_NIBD_NI]
source_name: Colon
characteristics: age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616951
sample_title: Normal colon acquired during surgery for colon cancer, male age 44 [ncRNA-Seq, 32_NIBD_NI]
source_name: Colon
characteristics: age: 44; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemorrhage (but looked inflamed on macro); disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616952
sample_title: Normal colon acquired during surgery for colonic inertia, female age 41 [ncRNA-Seq, 36_NIBD_NI]
source_name: Colon
characteristics: age: 41; Sex: female; disease: Normal, colonic inertia, TI submucosal hemorrhage (but looked inflamed on macro); disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616953
sample_title: Normal colon acquired during surgery for colon cancer, male age 52 [ncRNA-Seq, 39_NIBD_NI]
source_name: Colon
characteristics: age: 52; Sex: male; disease: Normal, Colon cancer; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616954
sample_title: Normal colon acquired during surgery for large polyp, male age 65 [ncRNA-Seq, 42_NIBD_NI]
source_name: Colon
characteristics: age: 65; Sex: male; disease: Normal control, large polyp; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616955
sample_title: Normal colon acquired during surgery for colonic inertia, female age 45 [ncRNA-Seq, 43_NIBD_NI]
source_name: Colon
characteristics: age: 45; Sex: female; disease: Normal, colonic inertia; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616956
sample_title: Normal colon acquired during surgery for adenoma, male age 70 [ncRNA-Seq, 48_NIBD_NI]
source_name: Colon
characteristics: age: 70; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616957
sample_title: Normal colon acquired during surgery for adenoma, male age 62 [ncRNA-Seq, 49_NIBD_NI]
source_name: Colon
characteristics: age: 62; Sex: male; disease: Normal, Adenoma; disease_stage: NA; inflamed: No; montreal classification: NA
Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 49; Sex: female; disease: Normal, SI Neuroendocrine tumor; disease_stage: NA; inflamed: No; montreal classification: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616958
sample_title: Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [ncRNA-Seq, 50_NIBD_NI]
source_name: Colon
characteristics: age: 49; Sex: female; disease: Normal, SI Neuroendocrine tumor; disease_stage: NA; inflamed: No; montreal classification: NA
B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L1B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616959
sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 20_CD_NI_B2]
source_name: Colon
characteristics: age: 15; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L1B2
B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616960
sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 21_CD_NI_B2]
source_name: Colon
characteristics: age: 51; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2
B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616961
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 29_CD_NI_B3]
source_name: Colon
characteristics: age: 59; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616962
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 405_CD_NI_B1]
source_name: Colon
characteristics: age: 56; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L2B3p
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616963
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_NI_B3]
source_name: Colon
characteristics: age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L2B3p
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616964
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_NI_B1]
source_name: Colon
characteristics: age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616965
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_NI_B1]
source_name: Colon
characteristics: age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L2B1
B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2p
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616966
sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 420_CD_NI_B2]
source_name: Colon
characteristics: age: 37; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L2B2p
B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L3B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616967
sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 422_CD_NI_B2]
source_name: Colon
characteristics: age: 21; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A1L3B2
B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616968
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 424_CD_NI_B3]
source_name: Colon
characteristics: age: 34; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616969
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 429_CD_NI_B1]
source_name: Colon
characteristics: age: 25; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616970
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_NI_B1]
source_name: Colon
characteristics: age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616971
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 433_CD_NI_B1]
source_name: Colon
characteristics: age: 29; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A2L3B1
B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616972
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_NI_B3]
source_name: Colon
characteristics: age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616973
sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_NI_B2]
source_name: Colon
characteristics: age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2
B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L1B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616974
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 450_CD_NI_B3]
source_name: Colon
characteristics: age: 28; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L1B3
B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616975
sample_title: B2/stricturing Crohn's disease [ncRNA-Seq, 51_CD_NI_B2]
source_name: Colon
characteristics: age: 30; Sex: female; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: No; montreal classification: A2L3B2
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616976
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 54_CD_NI_B1]
source_name: Colon
characteristics: age: 20; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L2B1
B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616977
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 62_CD_NI_B3]
source_name: Colon
characteristics: age: 45; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L3B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616978
sample_title: B1/non-strituring, non-penetrating Crohn's disease [ncRNA-Seq, 63_CD_NI_B1]
source_name: Colon
characteristics: age: 49; Sex: male; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: No; montreal classification: A1L3B1
B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616979
sample_title: B3/penetrating Crohn's disease [ncRNA-Seq, 64_CD_NI_B3]
source_name: Colon
characteristics: age: 49; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: No; montreal classification: A2L3B3
inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L2B3p
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616980
sample_title: inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 407_CD_IF_B3]
source_name: Colon
characteristics: age: 43; Sex: female; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L2B3p
inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616981
sample_title: inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 408_CD_IF_B1]
source_name: Colon
characteristics: age: 23; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1
inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616982
sample_title: inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 413_CD_IF_B1]
source_name: Colon
characteristics: age: 32; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A2L2B1
inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A1L2B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616983
sample_title: inflamed region of patient with B1/non-stricturing, non-penetrating Crohn's disease [ncRNA-Seq, 431_CD_IF_B1]
source_name: Colon
characteristics: age: 20; Sex: female; disease: Crohn's Disease; disease_stage: B1/non-strictuing, non-penetrating; inflamed: Yes; montreal classification: A1L2B1
inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L3B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616984
sample_title: inflamed region of patient with B3/penetrating Crohn's disease [ncRNA-Seq, 434_CD_IF_B3]
source_name: Colon
characteristics: age: 31; Sex: male; disease: Crohn's Disease; disease_stage: B3/penetrating; inflamed: Yes; montreal classification: A2L3B3
inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Colon
- Characteristics
- age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: Yes; montreal classification: A2L3B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1616985
sample_title: inflamed region of patient with B2/stricturing Crohn's disease [ncRNA-Seq, 440_CD_IF_B2]
source_name: Colon
characteristics: age: 76; Sex: male; disease: Crohn's Disease; disease_stage: B2/stricturing; inflamed: Yes; montreal classification: A2L3B2