GSE66407

Gut biopsies from patients with Crohn's Disease and Ulcerative Colitis and healthy controls

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

266 case / 99 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Summary

For IBD, >163 susceptibility loci have been revealed by Genome-wide association studies (GWAS). Still only 13.6% of the heritability in CD and 7.5% in UC can be explained by the loci that have been revealed (23128233). In an endeavor to pinpoint additional IBD genes and pathways involved in the disease, we have made a large scale transcriptome analysis of human pince 380 biopsies from 109 donors. We identified novel genes and protein-protein interaction networks that are strongly associated with disease and gives new insight to the pathology of both CD and UC and the resulting inflammation

Overall design

Cross-sectional sample collection from patient

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
368 GSM samples
Primary source
recount3

Planned trusted source for processed count availability.

No match found
Expression Atlas

Planned source for curated expression experiment links.

No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

3 linked publications 3 DOIs

Related publications

  1. Management of ulcerative colitis by dichloroacetate: Impact on NFATC1/NLRP3/IL1B signaling based on bioinformatics analysis combined with in vivo experimental verification. Inflammopharmacology, 2024
  2. DsbA-L safeguards T cell mitochondrial redox homeostasis to restrain Th17 differentiation and colitis. Cell death & disease, 2026
  3. Construction of a molecular inflammatory predictive model with histone modification-related genes and identification of CAMK2D as a potential response signature to infliximab in ulcerative colitis. Frontiers in immunology, 2023
Available

Metadata Quality Components

Analysis Readiness

Review before analysis
85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

  • 3 samples are still unassigned.

Next Steps

  • Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 3 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Inflamed tissue 266 samples
  • Likely control group Control 99 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 3 publications; 3 DOIs available: PMID 37902927, PMID 38274809, PMID 42288480.
  • Publication context: Management of ulcerative colitis by dichloroacetate: Impact on NFATC1/NLRP3/IL1B signaling based on bioinformatics analysis combined with in vivo experimental verification.. Inflammopharmacology, 2024. PMID 37902927. DOI 10.1007/s10787-023-01362-2.
  • Publication context: Construction of a molecular inflammatory predictive model with histone modification-related genes and identification of CAMK2D as a potential response signature to infliximab in ulcerative colitis.. Frontiers in immunology, 2023. PMID 38274809. DOI 10.3389/fimmu.2023.1282136.
  • Publication context: DsbA-L safeguards T cell mitochondrial redox homeostasis to restrain Th17 differentiation and colitis.. Cell death & disease, 2026. PMID 42288480. DOI 10.1038/s41419-026-08978-6.

Cautions

  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 1480 fields

Sample Group Preview

showing 103 of 368 preview rows
Show Hide
Study totals: Case 266 | Control 99 | Unassigned 3 | Excluded 0 | Ambiguous 0 showing 103 of 368 preview rows
Group Role Accession Title Source / characteristics Reason
Inflamed tissue Case GSM1621588 22-6 Sigmoideum Patient: 22; Biopsy: 6; Age: 19; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621589 91-5 Sigmoideum Patient: 91; Biopsy: 5; Age: 54; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621592 23-4 Rectum Patient: 23; Biopsy: 4; Age: 70; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621593 96-1 Ileum Patient: 96; Biopsy: 1; Age: 22; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621594 50-3 Rectum Patient: 50; Biopsy: 3; Age: 45; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621596 25-2 Ileum Patient: 25; Biopsy: 2; Age: 31; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621597 97-4 Rectum Patient: 97; Biopsy: 4; Age: 39; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621599 52-3 Transversum Patient: 52; Biopsy: 3; Age: 24; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Transversum Case marker detected.
Inflamed tissue Case GSM1621600 101-1 Ascendens Patient: 101; Biopsy: 1; Age: 59; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Case marker detected.
Inflamed tissue Case GSM1621601 29-1 Transversum Patient: 29; Biopsy: 1; Age: 20; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Case marker detected.
Inflamed tissue Case GSM1621603 51-1 Sigmoideum Patient: 51; Biopsy: 1; Age: 77; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621604 107-1 Ascendens Patient: 107; Biopsy: 1; Age: 68; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Case marker detected.
Inflamed tissue Case GSM1621605 43-1 Ileum Patient: 43; Biopsy: 1; Age: 45; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621607 51-2 Sigmoideum Patient: 51; Biopsy: 2; Age: 77; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621608 109-3 Sigmoideum Patient: 109; Biopsy: 3; Age: 41; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621609 40-2 Ascendens Patient: 40; Biopsy: 2; Age: 50; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Case marker detected.
Inflamed tissue Case GSM1621611 51-3 Rectum Patient: 51; Biopsy: 3; Age: 77; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621612 113-2 Descendens Patient: 113; Biopsy: 2; Age: 35; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Case marker detected.
Inflamed tissue Case GSM1621613 50-1 Ileum Patient: 50; Biopsy: 1; Age: 45; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621615 116-2 Rectum Patient: 116; Biopsy: 2; Age: 24; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621616 39-1 Sigmoideum Patient: 39; Biopsy: 1; Age: 36; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621617 50-2 Transversum Patient: 50; Biopsy: 2; Age: 45; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Case marker detected.
Inflamed tissue Case GSM1621620 40-1 Ileum Patient: 40; Biopsy: 1; Age: 50; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621623 52-2 Ascendens Patient: 52; Biopsy: 2; Age: 24; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Case marker detected.
Inflamed tissue Case GSM1621624 34-8 Rectum Patient: 34; Biopsy: 8; Age: 52; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621626 52-5 Sigmoideum Patient: 52; Biopsy: 5; Age: 24; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621627 48-2 Sigmoideum Patient: 48; Biopsy: 2; Age: 31; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621629 22-3 Ascendens Patient: 22; Biopsy: 3; Age: 19; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Case marker detected.
Inflamed tissue Case GSM1621630 91-6 Rectum Patient: 91; Biopsy: 6; Age: 54; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621632 59-3 Ascendens Patient: 59; Biopsy: 3; Age: 59; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Ascendens Case marker detected.
Inflamed tissue Case GSM1621633 23-3 Sigmoideum Patient: 23; Biopsy: 3; Age: 70; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621634 96-2 Transversum Patient: 96; Biopsy: 2; Age: 22; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Case marker detected.
Inflamed tissue Case GSM1621636 65-1 Descendens Patient: 65; Biopsy: 1; Age: 37; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Descendens Case marker detected.
Inflamed tissue Case GSM1621637 25-1 Ileum Patient: 25; Biopsy: 1; Age: 31; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621638 99-1 Rectum Patient: 99; Biopsy: 1; Age: 36; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621640 59-6 Sigmoideum Patient: 59; Biopsy: 6; Age: 59; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621641 101-2 Transversum Patient: 101; Biopsy: 2; Age: 59; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Transversum Case marker detected.
Inflamed tissue Case GSM1621642 28-3 Rectum Patient: 28; Biopsy: 3; Age: 21; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621644 59-5 Descendens Patient: 59; Biopsy: 5; Age: 59; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Case marker detected.
Inflamed tissue Case GSM1621645 107-2 Sigmoideum Patient: 107; Biopsy: 2; Age: 68; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621646 31-1 Sigmoideum Patient: 31; Biopsy: 1; Age: 63; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621648 59-7 Rectum Patient: 59; Biopsy: 7; Age: 59; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621649 109-4 Rectum Patient: 109; Biopsy: 4; Age: 41; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621650 35-1 Ileum Patient: 35; Biopsy: 1; Age: 31; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621652 59-2 Coecum Patient: 59; Biopsy: 2; Age: 59; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Coecum Case marker detected.
Inflamed tissue Case GSM1621653 113-1 Transversum Patient: 113; Biopsy: 1; Age: 35; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Case marker detected.
Inflamed tissue Case GSM1621654 31-2 Sigmoideum Patient: 31; Biopsy: 2; Age: 63; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Yes; Tissue: Sigmoideum Case marker detected.
Inflamed tissue Case GSM1621655 59-1 Ileum Patient: 59; Biopsy: 1; Age: 59; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Case marker detected.
Inflamed tissue Case GSM1621657 116-3 Rectum Patient: 116; Biopsy: 3; Age: 24; Diagnosis: CD; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Case marker detected.
Inflamed tissue Case GSM1621658 37-1 Sigmoideum Patient: 37; Biopsy: 1; Age: 29; Diagnosis: UC; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Case marker detected.
216 additional case samples are hidden from this preview.
Control Control GSM1621586 10-2 Ascendens Patient: 10; Biopsy: 2; Age: 37; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621587 53-3 Sigmoideum Patient: 53; Biopsy: 3; Age: 18; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Sample-local control marker detected.
Control Control GSM1621590 10-5 Sigmoideum Patient: 10; Biopsy: 5; Age: 37; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Sample-local control marker detected.
Control Control GSM1621591 53-1 Ileum Patient: 53; Biopsy: 1; Age: 18; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Sample-local control marker detected.
Control Control GSM1621595 9-5 Descendens Patient: 9; Biopsy: 5; Age: 62; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
Control Control GSM1621598 12-6 Rectum Patient: 12; Biopsy: 6; Age: 67; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621602 12-5 Sigmoideum Patient: 12; Biopsy: 5; Age: 67; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Sample-local control marker detected.
Control Control GSM1621606 11-6 Rectum Patient: 11; Biopsy: 6; Age: 77; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621610 10-6 Rectum Patient: 10; Biopsy: 6; Age: 37; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621614 9-7 Rectum Patient: 9; Biopsy: 7; Age: 62; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621618 9-4 Transversum Patient: 9; Biopsy: 4; Age: 62; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621619 120-5 Rectum Patient: 120; Biopsy: 5; Age: 43; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621621 9-6 Descendens Patient: 9; Biopsy: 6; Age: 62; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
Control Control GSM1621622 12-4 Descendens Patient: 12; Biopsy: 4; Age: 67; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
Control Control GSM1621625 12-3 Transversum Patient: 12; Biopsy: 3; Age: 67; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621628 12-2 Ascendens Patient: 12; Biopsy: 2; Age: 67; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621631 12-1 Coecum Patient: 12; Biopsy: 1; Age: 67; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Coecum Sample-local control marker detected.
Control Control GSM1621635 11-5 Sigmoideum Patient: 11; Biopsy: 5; Age: 77; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Sample-local control marker detected.
Control Control GSM1621639 11-1 Coecum Patient: 11; Biopsy: 1; Age: 77; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Coecum Sample-local control marker detected.
Control Control GSM1621643 11-2 Ascendens Patient: 11; Biopsy: 2; Age: 77; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621647 11-4 Descendens Patient: 11; Biopsy: 4; Age: 77; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
Control Control GSM1621651 11-3 Transversum Patient: 11; Biopsy: 3; Age: 77; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621656 6-4 Sigmoideum Patient: 6; Biopsy: 4; Age: 68; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Sample-local control marker detected.
Control Control GSM1621660 6-5 Rectum Patient: 6; Biopsy: 5; Age: 68; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621661 121-1 Ileum Patient: 121; Biopsy: 1; Age: 29; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Sample-local control marker detected.
Control Control GSM1621673 53-2 Ascendens Patient: 53; Biopsy: 2; Age: 18; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621681 2-6 Rectum Patient: 2; Biopsy: 6; Age: 53; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621685 2-4 Descendens Patient: 2; Biopsy: 4; Age: 53; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
Control Control GSM1621690 6-3 Descendens Patient: 6; Biopsy: 3; Age: 68; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
Control Control GSM1621692 42-3 Transversum Patient: 42; Biopsy: 3; Age: 22; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621693 2-1 Coecum Patient: 2; Biopsy: 1; Age: 53; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Coecum Sample-local control marker detected.
Control Control GSM1621694 67-G1 Bulbus durodenum Patient: 67; Biopsy: G1; Age: 46; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621696 42-1 Ileum Patient: 42; Biopsy: 1; Age: 22; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ileum Sample-local control marker detected.
Control Control GSM1621697 2-3 Transversum Patient: 2; Biopsy: 3; Age: 53; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621701 2-5 Sigmoideum Patient: 2; Biopsy: 5; Age: 53; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Sigmoideum Sample-local control marker detected.
Control Control GSM1621702 68-G1 Bulbus durodenum Patient: 68; Biopsy: G1; Age: 65; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621705 6-2 Transversum Patient: 6; Biopsy: 2; Age: 68; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621706 66-G1 Bulbus durodenum Patient: 66; Biopsy: G1; Age: 39; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621707 121-2 Coecum Patient: 121; Biopsy: 2; Age: 29; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Coecum Sample-local control marker detected.
Control Control GSM1621721 2-2 Ascendens Patient: 2; Biopsy: 2; Age: 53; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621737 61-G1 Bulbus durodenum Patient: 61; Biopsy: G1; Age: 85; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621741 60-G1 Bulbus durodenum Patient: 60; Biopsy: G1; Age: 60; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621745 63-G1 Bulbus durodenum Patient: 63; Biopsy: G1; Age: 40; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621748 1-1 Coecum Patient: 1; Biopsy: 1; Age: 55; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Coecum Sample-local control marker detected.
Control Control GSM1621749 64-G1 Bulbus durodenum Patient: 64; Biopsy: G1; Age: 37; Diagnosis: Control; Gastroscopy: TRUE; Inflammation: Non; Tissue: Bulbus durodenum Sample-local control marker detected.
Control Control GSM1621751 32-2 Ascendens Patient: 32; Biopsy: 2; Age: 26; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621752 1-3 Transversum Patient: 1; Biopsy: 3; Age: 55; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Transversum Sample-local control marker detected.
Control Control GSM1621754 121-3 Ascendens Patient: 121; Biopsy: 3; Age: 29; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Ascendens Sample-local control marker detected.
Control Control GSM1621756 1-6 Rectum Patient: 1; Biopsy: 6; Age: 55; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Rectum Sample-local control marker detected.
Control Control GSM1621760 3-5 Descendens Patient: 3; Biopsy: 5; Age: 18; Diagnosis: Control; Gastroscopy: FALSE; Inflammation: Non; Tissue: Descendens Sample-local control marker detected.
49 additional control samples are hidden from this preview.
Unassigned Unassigned GSM1621722 69-2 NA Patient: 69; Biopsy: 2; Gastroscopy: FALSE No explicit case or control marker detected.
Unassigned Unassigned GSM1621757 75-1 NA Patient: 75; Biopsy: 1; Gastroscopy: FALSE No explicit case or control marker detected.
Unassigned Unassigned GSM1621812 75-2 NA Patient: 75; Biopsy: 2; Gastroscopy: FALSE No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.