GSE66407 matching samples

GSM1621586

Uncertain

10-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 10-2 ascendens patient: 10; biopsy: 2; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 10-2 ascendens patient: 10; biopsy: 2; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 10-2 ascendens patient: 10; biopsy: 2; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 10-2 ascendens patient: 10; biopsy: 2; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 10; biopsy: 2; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621586
sample_title: 10-2
source_name: ascendens
characteristics: patient: 10; biopsy: 2; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621587

Uncertain

53-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 53-3 sigmoideum patient: 53; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 53-3 sigmoideum patient: 53; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 53-3 sigmoideum patient: 53; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 53-3 sigmoideum patient: 53; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 53; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621587
sample_title: 53-3
source_name: sigmoideum
characteristics: patient: 53; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621588

Uncertain

22-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-6 sigmoideum patient: 22; biopsy: 6; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 22-6 sigmoideum patient: 22; biopsy: 6; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-6 sigmoideum patient: 22; biopsy: 6; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 22-6 sigmoideum patient: 22; biopsy: 6; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 22; biopsy: 6; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621588
sample_title: 22-6
source_name: sigmoideum
characteristics: patient: 22; biopsy: 6; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621589

Uncertain

91-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 91-5 sigmoideum patient: 91; biopsy: 5; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 91-5 sigmoideum patient: 91; biopsy: 5; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 91-5 sigmoideum patient: 91; biopsy: 5; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 91-5 sigmoideum patient: 91; biopsy: 5; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 91; biopsy: 5; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621589
sample_title: 91-5
source_name: sigmoideum
characteristics: patient: 91; biopsy: 5; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621590

Uncertain

10-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 10-5 sigmoideum patient: 10; biopsy: 5; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 10-5 sigmoideum patient: 10; biopsy: 5; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 10-5 sigmoideum patient: 10; biopsy: 5; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 10-5 sigmoideum patient: 10; biopsy: 5; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 10; biopsy: 5; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621590
sample_title: 10-5
source_name: sigmoideum
characteristics: patient: 10; biopsy: 5; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621591

Uncertain

53-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 53-1 ileum patient: 53; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 53-1 ileum patient: 53; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 53-1 ileum patient: 53; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 53-1 ileum patient: 53; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 53; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621591
sample_title: 53-1
source_name: ileum
characteristics: patient: 53; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621592

Uncertain

23-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23-4 rectum patient: 23; biopsy: 4; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 23-4 rectum patient: 23; biopsy: 4; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23-4 rectum patient: 23; biopsy: 4; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 23-4 rectum patient: 23; biopsy: 4; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 23; biopsy: 4; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621592
sample_title: 23-4
source_name: rectum
characteristics: patient: 23; biopsy: 4; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621593

Uncertain

96-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 96-1 ileum patient: 96; biopsy: 1; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 96-1 ileum patient: 96; biopsy: 1; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 96-1 ileum patient: 96; biopsy: 1; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 96-1 ileum patient: 96; biopsy: 1; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 96; biopsy: 1; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621593
sample_title: 96-1
source_name: ileum
characteristics: patient: 96; biopsy: 1; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621594

Uncertain

50-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 50-3 rectum patient: 50; biopsy: 3; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 50-3 rectum patient: 50; biopsy: 3; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 50-3 rectum patient: 50; biopsy: 3; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 50-3 rectum patient: 50; biopsy: 3; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 50; biopsy: 3; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621594
sample_title: 50-3
source_name: rectum
characteristics: patient: 50; biopsy: 3; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621595

Uncertain

9-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9-5 descendens patient: 9; biopsy: 5; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 9-5 descendens patient: 9; biopsy: 5; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9-5 descendens patient: 9; biopsy: 5; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 9-5 descendens patient: 9; biopsy: 5; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 9; biopsy: 5; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621595
sample_title: 9-5
source_name: descendens
characteristics: patient: 9; biopsy: 5; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621596

Uncertain

25-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 25-2 ileum patient: 25; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 25-2 ileum patient: 25; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 25-2 ileum patient: 25; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 25-2 ileum patient: 25; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 25; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621596
sample_title: 25-2
source_name: ileum
characteristics: patient: 25; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621597

Uncertain

97-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 97-4 rectum patient: 97; biopsy: 4; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 97-4 rectum patient: 97; biopsy: 4; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 97-4 rectum patient: 97; biopsy: 4; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 97-4 rectum patient: 97; biopsy: 4; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 97; biopsy: 4; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621597
sample_title: 97-4
source_name: rectum
characteristics: patient: 97; biopsy: 4; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621598

Uncertain

12-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12-6 rectum patient: 12; biopsy: 6; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 12-6 rectum patient: 12; biopsy: 6; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12-6 rectum patient: 12; biopsy: 6; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 12-6 rectum patient: 12; biopsy: 6; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 12; biopsy: 6; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621598
sample_title: 12-6
source_name: rectum
characteristics: patient: 12; biopsy: 6; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621599

Uncertain

52-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 52-3 transversum patient: 52; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 52-3 transversum patient: 52; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 52-3 transversum patient: 52; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 52-3 transversum patient: 52; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 52; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621599
sample_title: 52-3
source_name: transversum
characteristics: patient: 52; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621600

Uncertain

101-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 101-1 ascendens patient: 101; biopsy: 1; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 101-1 ascendens patient: 101; biopsy: 1; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 101-1 ascendens patient: 101; biopsy: 1; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 101-1 ascendens patient: 101; biopsy: 1; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 101; biopsy: 1; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621600
sample_title: 101-1
source_name: ascendens
characteristics: patient: 101; biopsy: 1; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621601

Uncertain

29-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 29-1 transversum patient: 29; biopsy: 1; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 29-1 transversum patient: 29; biopsy: 1; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 29-1 transversum patient: 29; biopsy: 1; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 29-1 transversum patient: 29; biopsy: 1; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 29; biopsy: 1; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621601
sample_title: 29-1
source_name: transversum
characteristics: patient: 29; biopsy: 1; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621602

Uncertain

12-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12-5 sigmoideum patient: 12; biopsy: 5; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 12-5 sigmoideum patient: 12; biopsy: 5; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12-5 sigmoideum patient: 12; biopsy: 5; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 12-5 sigmoideum patient: 12; biopsy: 5; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 12; biopsy: 5; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621602
sample_title: 12-5
source_name: sigmoideum
characteristics: patient: 12; biopsy: 5; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621603

Uncertain

51-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 51-1 sigmoideum patient: 51; biopsy: 1; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 51-1 sigmoideum patient: 51; biopsy: 1; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 51-1 sigmoideum patient: 51; biopsy: 1; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 51-1 sigmoideum patient: 51; biopsy: 1; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 51; biopsy: 1; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621603
sample_title: 51-1
source_name: sigmoideum
characteristics: patient: 51; biopsy: 1; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621604

Uncertain

107-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 107-1 ascendens patient: 107; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 107-1 ascendens patient: 107; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 107-1 ascendens patient: 107; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 107-1 ascendens patient: 107; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 107; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621604
sample_title: 107-1
source_name: ascendens
characteristics: patient: 107; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621605

Uncertain

43-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 43-1 ileum patient: 43; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 43-1 ileum patient: 43; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 43-1 ileum patient: 43; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 43-1 ileum patient: 43; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 43; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621605
sample_title: 43-1
source_name: ileum
characteristics: patient: 43; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621606

Uncertain

11-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11-6 rectum patient: 11; biopsy: 6; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 11-6 rectum patient: 11; biopsy: 6; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11-6 rectum patient: 11; biopsy: 6; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 11-6 rectum patient: 11; biopsy: 6; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 11; biopsy: 6; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621606
sample_title: 11-6
source_name: rectum
characteristics: patient: 11; biopsy: 6; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621607

Uncertain

51-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 51-2 sigmoideum patient: 51; biopsy: 2; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 51-2 sigmoideum patient: 51; biopsy: 2; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 51-2 sigmoideum patient: 51; biopsy: 2; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 51-2 sigmoideum patient: 51; biopsy: 2; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 51; biopsy: 2; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621607
sample_title: 51-2
source_name: sigmoideum
characteristics: patient: 51; biopsy: 2; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621608

Uncertain

109-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 109-3 sigmoideum patient: 109; biopsy: 3; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 109-3 sigmoideum patient: 109; biopsy: 3; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 109-3 sigmoideum patient: 109; biopsy: 3; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 109-3 sigmoideum patient: 109; biopsy: 3; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 109; biopsy: 3; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621608
sample_title: 109-3
source_name: sigmoideum
characteristics: patient: 109; biopsy: 3; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621609

Uncertain

40-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40-2 ascendens patient: 40; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 40-2 ascendens patient: 40; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40-2 ascendens patient: 40; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 40-2 ascendens patient: 40; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 40; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621609
sample_title: 40-2
source_name: ascendens
characteristics: patient: 40; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621610

Uncertain

10-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 10-6 rectum patient: 10; biopsy: 6; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 10-6 rectum patient: 10; biopsy: 6; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 10-6 rectum patient: 10; biopsy: 6; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 10-6 rectum patient: 10; biopsy: 6; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 10; biopsy: 6; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621610
sample_title: 10-6
source_name: rectum
characteristics: patient: 10; biopsy: 6; age: 37; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621611

Uncertain

51-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 51-3 rectum patient: 51; biopsy: 3; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 51-3 rectum patient: 51; biopsy: 3; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 51-3 rectum patient: 51; biopsy: 3; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 51-3 rectum patient: 51; biopsy: 3; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 51; biopsy: 3; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621611
sample_title: 51-3
source_name: rectum
characteristics: patient: 51; biopsy: 3; age: 77; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621612

Uncertain

113-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 113-2 descendens patient: 113; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 113-2 descendens patient: 113; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 113-2 descendens patient: 113; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 113-2 descendens patient: 113; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 113; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621612
sample_title: 113-2
source_name: descendens
characteristics: patient: 113; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621613

Uncertain

50-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 50-1 ileum patient: 50; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 50-1 ileum patient: 50; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 50-1 ileum patient: 50; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 50-1 ileum patient: 50; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 50; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621613
sample_title: 50-1
source_name: ileum
characteristics: patient: 50; biopsy: 1; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621614

Uncertain

9-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9-7 rectum patient: 9; biopsy: 7; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 9-7 rectum patient: 9; biopsy: 7; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9-7 rectum patient: 9; biopsy: 7; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 9-7 rectum patient: 9; biopsy: 7; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 9; biopsy: 7; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621614
sample_title: 9-7
source_name: rectum
characteristics: patient: 9; biopsy: 7; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621615

Uncertain

116-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 116-2 rectum patient: 116; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 116-2 rectum patient: 116; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 116-2 rectum patient: 116; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 116-2 rectum patient: 116; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 116; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621615
sample_title: 116-2
source_name: rectum
characteristics: patient: 116; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621616

Uncertain

39-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 39-1 sigmoideum patient: 39; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 39-1 sigmoideum patient: 39; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 39-1 sigmoideum patient: 39; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 39-1 sigmoideum patient: 39; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 39; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621616
sample_title: 39-1
source_name: sigmoideum
characteristics: patient: 39; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621617

Uncertain

50-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 50-2 transversum patient: 50; biopsy: 2; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 50-2 transversum patient: 50; biopsy: 2; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 50-2 transversum patient: 50; biopsy: 2; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 50-2 transversum patient: 50; biopsy: 2; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 50; biopsy: 2; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621617
sample_title: 50-2
source_name: transversum
characteristics: patient: 50; biopsy: 2; age: 45; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621618

Uncertain

9-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9-4 transversum patient: 9; biopsy: 4; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 9-4 transversum patient: 9; biopsy: 4; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9-4 transversum patient: 9; biopsy: 4; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 9-4 transversum patient: 9; biopsy: 4; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 9; biopsy: 4; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621618
sample_title: 9-4
source_name: transversum
characteristics: patient: 9; biopsy: 4; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621619

Uncertain

120-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 120-5 rectum patient: 120; biopsy: 5; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 120-5 rectum patient: 120; biopsy: 5; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 120-5 rectum patient: 120; biopsy: 5; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 120-5 rectum patient: 120; biopsy: 5; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 120; biopsy: 5; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621619
sample_title: 120-5
source_name: rectum
characteristics: patient: 120; biopsy: 5; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621620

Uncertain

40-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40-1 ileum patient: 40; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 40-1 ileum patient: 40; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40-1 ileum patient: 40; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 40-1 ileum patient: 40; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 40; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621620
sample_title: 40-1
source_name: ileum
characteristics: patient: 40; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621621

Uncertain

9-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9-6 descendens patient: 9; biopsy: 6; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 9-6 descendens patient: 9; biopsy: 6; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9-6 descendens patient: 9; biopsy: 6; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 9-6 descendens patient: 9; biopsy: 6; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 9; biopsy: 6; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621621
sample_title: 9-6
source_name: descendens
characteristics: patient: 9; biopsy: 6; age: 62; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621622

Uncertain

12-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12-4 descendens patient: 12; biopsy: 4; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 12-4 descendens patient: 12; biopsy: 4; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12-4 descendens patient: 12; biopsy: 4; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 12-4 descendens patient: 12; biopsy: 4; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 12; biopsy: 4; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621622
sample_title: 12-4
source_name: descendens
characteristics: patient: 12; biopsy: 4; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621623

Uncertain

52-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 52-2 ascendens patient: 52; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 52-2 ascendens patient: 52; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 52-2 ascendens patient: 52; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 52-2 ascendens patient: 52; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 52; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621623
sample_title: 52-2
source_name: ascendens
characteristics: patient: 52; biopsy: 2; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621624

Uncertain

34-8

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 34-8 rectum patient: 34; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 34-8 rectum patient: 34; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 34-8 rectum patient: 34; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 34-8 rectum patient: 34; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 34; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621624
sample_title: 34-8
source_name: rectum
characteristics: patient: 34; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621625

Uncertain

12-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12-3 transversum patient: 12; biopsy: 3; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 12-3 transversum patient: 12; biopsy: 3; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12-3 transversum patient: 12; biopsy: 3; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 12-3 transversum patient: 12; biopsy: 3; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 12; biopsy: 3; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621625
sample_title: 12-3
source_name: transversum
characteristics: patient: 12; biopsy: 3; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621626

Uncertain

52-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 52-5 sigmoideum patient: 52; biopsy: 5; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 52-5 sigmoideum patient: 52; biopsy: 5; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 52-5 sigmoideum patient: 52; biopsy: 5; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 52-5 sigmoideum patient: 52; biopsy: 5; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 52; biopsy: 5; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621626
sample_title: 52-5
source_name: sigmoideum
characteristics: patient: 52; biopsy: 5; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621627

Uncertain

48-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 48-2 sigmoideum patient: 48; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 48-2 sigmoideum patient: 48; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 48-2 sigmoideum patient: 48; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 48-2 sigmoideum patient: 48; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 48; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621627
sample_title: 48-2
source_name: sigmoideum
characteristics: patient: 48; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621628

Uncertain

12-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12-2 ascendens patient: 12; biopsy: 2; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 12-2 ascendens patient: 12; biopsy: 2; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12-2 ascendens patient: 12; biopsy: 2; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 12-2 ascendens patient: 12; biopsy: 2; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 12; biopsy: 2; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621628
sample_title: 12-2
source_name: ascendens
characteristics: patient: 12; biopsy: 2; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621629

Uncertain

22-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-3 ascendens patient: 22; biopsy: 3; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 22-3 ascendens patient: 22; biopsy: 3; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-3 ascendens patient: 22; biopsy: 3; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 22-3 ascendens patient: 22; biopsy: 3; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 22; biopsy: 3; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621629
sample_title: 22-3
source_name: ascendens
characteristics: patient: 22; biopsy: 3; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621630

Uncertain

91-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 91-6 rectum patient: 91; biopsy: 6; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 91-6 rectum patient: 91; biopsy: 6; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 91-6 rectum patient: 91; biopsy: 6; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 91-6 rectum patient: 91; biopsy: 6; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 91; biopsy: 6; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621630
sample_title: 91-6
source_name: rectum
characteristics: patient: 91; biopsy: 6; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621631

Uncertain

12-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12-1 coecum patient: 12; biopsy: 1; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 12-1 coecum patient: 12; biopsy: 1; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12-1 coecum patient: 12; biopsy: 1; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 12-1 coecum patient: 12; biopsy: 1; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 12; biopsy: 1; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621631
sample_title: 12-1
source_name: coecum
characteristics: patient: 12; biopsy: 1; age: 67; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621632

Uncertain

59-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-3 ascendens patient: 59; biopsy: 3; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 59-3 ascendens patient: 59; biopsy: 3; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-3 ascendens patient: 59; biopsy: 3; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 59-3 ascendens patient: 59; biopsy: 3; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 59; biopsy: 3; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621632
sample_title: 59-3
source_name: ascendens
characteristics: patient: 59; biopsy: 3; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

GSM1621633

Uncertain

23-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23-3 sigmoideum patient: 23; biopsy: 3; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 23-3 sigmoideum patient: 23; biopsy: 3; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23-3 sigmoideum patient: 23; biopsy: 3; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 23-3 sigmoideum patient: 23; biopsy: 3; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 23; biopsy: 3; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621633
sample_title: 23-3
source_name: sigmoideum
characteristics: patient: 23; biopsy: 3; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621634

Uncertain

96-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 96-2 transversum patient: 96; biopsy: 2; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 96-2 transversum patient: 96; biopsy: 2; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 96-2 transversum patient: 96; biopsy: 2; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 96-2 transversum patient: 96; biopsy: 2; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 96; biopsy: 2; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621634
sample_title: 96-2
source_name: transversum
characteristics: patient: 96; biopsy: 2; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621635

Uncertain

11-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11-5 sigmoideum patient: 11; biopsy: 5; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 11-5 sigmoideum patient: 11; biopsy: 5; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11-5 sigmoideum patient: 11; biopsy: 5; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 11-5 sigmoideum patient: 11; biopsy: 5; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 11; biopsy: 5; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621635
sample_title: 11-5
source_name: sigmoideum
characteristics: patient: 11; biopsy: 5; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621636

Uncertain

65-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 65-1 descendens patient: 65; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 65-1 descendens patient: 65; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 65-1 descendens patient: 65; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 65-1 descendens patient: 65; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 65; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621636
sample_title: 65-1
source_name: descendens
characteristics: patient: 65; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621637

Uncertain

25-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 25-1 ileum patient: 25; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 25-1 ileum patient: 25; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 25-1 ileum patient: 25; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 25-1 ileum patient: 25; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 25; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621637
sample_title: 25-1
source_name: ileum
characteristics: patient: 25; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621638

Uncertain

99-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 99-1 rectum patient: 99; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 99-1 rectum patient: 99; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 99-1 rectum patient: 99; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 99-1 rectum patient: 99; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 99; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621638
sample_title: 99-1
source_name: rectum
characteristics: patient: 99; biopsy: 1; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621639

Uncertain

11-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11-1 coecum patient: 11; biopsy: 1; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 11-1 coecum patient: 11; biopsy: 1; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11-1 coecum patient: 11; biopsy: 1; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 11-1 coecum patient: 11; biopsy: 1; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 11; biopsy: 1; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621639
sample_title: 11-1
source_name: coecum
characteristics: patient: 11; biopsy: 1; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621640

Uncertain

59-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-6 sigmoideum patient: 59; biopsy: 6; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 59-6 sigmoideum patient: 59; biopsy: 6; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-6 sigmoideum patient: 59; biopsy: 6; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 59-6 sigmoideum patient: 59; biopsy: 6; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 59; biopsy: 6; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621640
sample_title: 59-6
source_name: sigmoideum
characteristics: patient: 59; biopsy: 6; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621641

Uncertain

101-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 101-2 transversum patient: 101; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 101-2 transversum patient: 101; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 101-2 transversum patient: 101; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 101-2 transversum patient: 101; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 101; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621641
sample_title: 101-2
source_name: transversum
characteristics: patient: 101; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621642

Uncertain

28-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 28-3 rectum patient: 28; biopsy: 3; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 28-3 rectum patient: 28; biopsy: 3; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 28-3 rectum patient: 28; biopsy: 3; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 28-3 rectum patient: 28; biopsy: 3; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 28; biopsy: 3; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621642
sample_title: 28-3
source_name: rectum
characteristics: patient: 28; biopsy: 3; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621643

Uncertain

11-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11-2 ascendens patient: 11; biopsy: 2; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 11-2 ascendens patient: 11; biopsy: 2; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11-2 ascendens patient: 11; biopsy: 2; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 11-2 ascendens patient: 11; biopsy: 2; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 11; biopsy: 2; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621643
sample_title: 11-2
source_name: ascendens
characteristics: patient: 11; biopsy: 2; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621644

Uncertain

59-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-5 descendens patient: 59; biopsy: 5; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 59-5 descendens patient: 59; biopsy: 5; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-5 descendens patient: 59; biopsy: 5; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 59-5 descendens patient: 59; biopsy: 5; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 59; biopsy: 5; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621644
sample_title: 59-5
source_name: descendens
characteristics: patient: 59; biopsy: 5; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621645

Uncertain

107-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 107-2 sigmoideum patient: 107; biopsy: 2; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 107-2 sigmoideum patient: 107; biopsy: 2; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 107-2 sigmoideum patient: 107; biopsy: 2; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 107-2 sigmoideum patient: 107; biopsy: 2; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 107; biopsy: 2; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621645
sample_title: 107-2
source_name: sigmoideum
characteristics: patient: 107; biopsy: 2; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621646

Uncertain

31-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 31-1 sigmoideum patient: 31; biopsy: 1; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 31-1 sigmoideum patient: 31; biopsy: 1; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 31-1 sigmoideum patient: 31; biopsy: 1; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 31-1 sigmoideum patient: 31; biopsy: 1; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 31; biopsy: 1; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621646
sample_title: 31-1
source_name: sigmoideum
characteristics: patient: 31; biopsy: 1; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621647

Uncertain

11-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11-4 descendens patient: 11; biopsy: 4; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 11-4 descendens patient: 11; biopsy: 4; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11-4 descendens patient: 11; biopsy: 4; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 11-4 descendens patient: 11; biopsy: 4; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 11; biopsy: 4; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621647
sample_title: 11-4
source_name: descendens
characteristics: patient: 11; biopsy: 4; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621648

Uncertain

59-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-7 rectum patient: 59; biopsy: 7; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 59-7 rectum patient: 59; biopsy: 7; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-7 rectum patient: 59; biopsy: 7; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 59-7 rectum patient: 59; biopsy: 7; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 59; biopsy: 7; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621648
sample_title: 59-7
source_name: rectum
characteristics: patient: 59; biopsy: 7; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621649

Uncertain

109-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 109-4 rectum patient: 109; biopsy: 4; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 109-4 rectum patient: 109; biopsy: 4; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 109-4 rectum patient: 109; biopsy: 4; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 109-4 rectum patient: 109; biopsy: 4; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 109; biopsy: 4; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621649
sample_title: 109-4
source_name: rectum
characteristics: patient: 109; biopsy: 4; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621650

Uncertain

35-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-1 ileum patient: 35; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 35-1 ileum patient: 35; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-1 ileum patient: 35; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 35-1 ileum patient: 35; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 35; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621650
sample_title: 35-1
source_name: ileum
characteristics: patient: 35; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621651

Uncertain

11-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11-3 transversum patient: 11; biopsy: 3; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 11-3 transversum patient: 11; biopsy: 3; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11-3 transversum patient: 11; biopsy: 3; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 11-3 transversum patient: 11; biopsy: 3; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 11; biopsy: 3; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621651
sample_title: 11-3
source_name: transversum
characteristics: patient: 11; biopsy: 3; age: 77; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621652

Uncertain

59-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-2 coecum patient: 59; biopsy: 2; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
- 59-2 coecum patient: 59; biopsy: 2; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-2 coecum patient: 59; biopsy: 2; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
- 59-2 coecum patient: 59; biopsy: 2; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 59; biopsy: 2; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621652
sample_title: 59-2
source_name: coecum
characteristics: patient: 59; biopsy: 2; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum

GSM1621653

Uncertain

113-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 113-1 transversum patient: 113; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 113-1 transversum patient: 113; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 113-1 transversum patient: 113; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 113-1 transversum patient: 113; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 113; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621653
sample_title: 113-1
source_name: transversum
characteristics: patient: 113; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621654

Uncertain

31-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 31-2 sigmoideum patient: 31; biopsy: 2; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 31-2 sigmoideum patient: 31; biopsy: 2; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 31-2 sigmoideum patient: 31; biopsy: 2; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 31-2 sigmoideum patient: 31; biopsy: 2; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 31; biopsy: 2; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621654
sample_title: 31-2
source_name: sigmoideum
characteristics: patient: 31; biopsy: 2; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621655

Uncertain

59-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-1 ileum patient: 59; biopsy: 1; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 59-1 ileum patient: 59; biopsy: 1; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-1 ileum patient: 59; biopsy: 1; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 59-1 ileum patient: 59; biopsy: 1; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 59; biopsy: 1; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621655
sample_title: 59-1
source_name: ileum
characteristics: patient: 59; biopsy: 1; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621656

Uncertain

6-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6-4 sigmoideum patient: 6; biopsy: 4; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 6-4 sigmoideum patient: 6; biopsy: 4; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6-4 sigmoideum patient: 6; biopsy: 4; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 6-4 sigmoideum patient: 6; biopsy: 4; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 6; biopsy: 4; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621656
sample_title: 6-4
source_name: sigmoideum
characteristics: patient: 6; biopsy: 4; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621657

Uncertain

116-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 116-3 rectum patient: 116; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 116-3 rectum patient: 116; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 116-3 rectum patient: 116; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 116-3 rectum patient: 116; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 116; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621657
sample_title: 116-3
source_name: rectum
characteristics: patient: 116; biopsy: 3; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621658

Uncertain

37-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 37-1 sigmoideum patient: 37; biopsy: 1; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 37-1 sigmoideum patient: 37; biopsy: 1; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 37-1 sigmoideum patient: 37; biopsy: 1; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 37-1 sigmoideum patient: 37; biopsy: 1; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 37; biopsy: 1; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621658
sample_title: 37-1
source_name: sigmoideum
characteristics: patient: 37; biopsy: 1; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621659

Uncertain

57-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 57-3 sigmoideum patient: 57; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 57-3 sigmoideum patient: 57; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 57-3 sigmoideum patient: 57; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 57-3 sigmoideum patient: 57; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 57; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621659
sample_title: 57-3
source_name: sigmoideum
characteristics: patient: 57; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621660

Uncertain

6-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6-5 rectum patient: 6; biopsy: 5; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 6-5 rectum patient: 6; biopsy: 5; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6-5 rectum patient: 6; biopsy: 5; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 6-5 rectum patient: 6; biopsy: 5; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 6; biopsy: 5; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621660
sample_title: 6-5
source_name: rectum
characteristics: patient: 6; biopsy: 5; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621661

Uncertain

121-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-1 ileum patient: 121; biopsy: 1; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 121-1 ileum patient: 121; biopsy: 1; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-1 ileum patient: 121; biopsy: 1; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 121-1 ileum patient: 121; biopsy: 1; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 121; biopsy: 1; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621661
sample_title: 121-1
source_name: ileum
characteristics: patient: 121; biopsy: 1; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621662

Uncertain

38-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 38-1 ileum patient: 38; biopsy: 1; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 38-1 ileum patient: 38; biopsy: 1; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 38-1 ileum patient: 38; biopsy: 1; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 38-1 ileum patient: 38; biopsy: 1; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 38; biopsy: 1; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621662
sample_title: 38-1
source_name: ileum
characteristics: patient: 38; biopsy: 1; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621663

Uncertain

55-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 55-4 sigmoideum patient: 55; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 55-4 sigmoideum patient: 55; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 55-4 sigmoideum patient: 55; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 55-4 sigmoideum patient: 55; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 55; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621663
sample_title: 55-4
source_name: sigmoideum
characteristics: patient: 55; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621664

Uncertain

7-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7-4 sigmoideum patient: 7; biopsy: 4; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 7-4 sigmoideum patient: 7; biopsy: 4; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7-4 sigmoideum patient: 7; biopsy: 4; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 7-4 sigmoideum patient: 7; biopsy: 4; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 7; biopsy: 4; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621664
sample_title: 7-4
source_name: sigmoideum
characteristics: patient: 7; biopsy: 4; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621665

Uncertain

122-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 122-2 rectum patient: 122; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 122-2 rectum patient: 122; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 122-2 rectum patient: 122; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 122-2 rectum patient: 122; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 122; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621665
sample_title: 122-2
source_name: rectum
characteristics: patient: 122; biopsy: 2; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621666

Uncertain

45-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45-5 sigmoideum patient: 45; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 45-5 sigmoideum patient: 45; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45-5 sigmoideum patient: 45; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 45-5 sigmoideum patient: 45; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 45; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621666
sample_title: 45-5
source_name: sigmoideum
characteristics: patient: 45; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621667

Uncertain

55-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 55-3 descendens patient: 55; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 55-3 descendens patient: 55; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 55-3 descendens patient: 55; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 55-3 descendens patient: 55; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 55; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621667
sample_title: 55-3
source_name: descendens
characteristics: patient: 55; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621668

Uncertain

7-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7-5 sigmoideum patient: 7; biopsy: 5; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 7-5 sigmoideum patient: 7; biopsy: 5; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7-5 sigmoideum patient: 7; biopsy: 5; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 7-5 sigmoideum patient: 7; biopsy: 5; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 7; biopsy: 5; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621668
sample_title: 7-5
source_name: sigmoideum
characteristics: patient: 7; biopsy: 5; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621669

Uncertain

123-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-7 rectum patient: 123; biopsy: 7; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 123-7 rectum patient: 123; biopsy: 7; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-7 rectum patient: 123; biopsy: 7; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 123-7 rectum patient: 123; biopsy: 7; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 123; biopsy: 7; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621669
sample_title: 123-7
source_name: rectum
characteristics: patient: 123; biopsy: 7; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621670

Uncertain

47-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 47-1 descendens patient: 47; biopsy: 1; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 47-1 descendens patient: 47; biopsy: 1; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 47-1 descendens patient: 47; biopsy: 1; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 47-1 descendens patient: 47; biopsy: 1; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 47; biopsy: 1; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621670
sample_title: 47-1
source_name: descendens
characteristics: patient: 47; biopsy: 1; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621671

Uncertain

55-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 55-2 transversum patient: 55; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 55-2 transversum patient: 55; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 55-2 transversum patient: 55; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 55-2 transversum patient: 55; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 55; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621671
sample_title: 55-2
source_name: transversum
characteristics: patient: 55; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621672

Uncertain

7-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7-1 ileum patient: 7; biopsy: 1; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 7-1 ileum patient: 7; biopsy: 1; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7-1 ileum patient: 7; biopsy: 1; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 7-1 ileum patient: 7; biopsy: 1; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 7; biopsy: 1; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621672
sample_title: 7-1
source_name: ileum
characteristics: patient: 7; biopsy: 1; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621673

Uncertain

53-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 53-2 ascendens patient: 53; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 53-2 ascendens patient: 53; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 53-2 ascendens patient: 53; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 53-2 ascendens patient: 53; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 53; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621673
sample_title: 53-2
source_name: ascendens
characteristics: patient: 53; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621674

Uncertain

55-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 55-1 ileum patient: 55; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 55-1 ileum patient: 55; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 55-1 ileum patient: 55; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 55-1 ileum patient: 55; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 55; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621674
sample_title: 55-1
source_name: ileum
characteristics: patient: 55; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621675

Uncertain

7-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7-2 coecum patient: 7; biopsy: 2; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 7-2 coecum patient: 7; biopsy: 2; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7-2 coecum patient: 7; biopsy: 2; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 7-2 coecum patient: 7; biopsy: 2; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 7; biopsy: 2; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621675
sample_title: 7-2
source_name: coecum
characteristics: patient: 7; biopsy: 2; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621676

Uncertain

22-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-4 transversum patient: 22; biopsy: 4; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 22-4 transversum patient: 22; biopsy: 4; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-4 transversum patient: 22; biopsy: 4; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 22-4 transversum patient: 22; biopsy: 4; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 22; biopsy: 4; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621676
sample_title: 22-4
source_name: transversum
characteristics: patient: 22; biopsy: 4; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621677

Uncertain

92-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 92-1 coecum patient: 92; biopsy: 1; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 92-1 coecum patient: 92; biopsy: 1; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 92-1 coecum patient: 92; biopsy: 1; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 92-1 coecum patient: 92; biopsy: 1; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 92; biopsy: 1; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621677
sample_title: 92-1
source_name: coecum
characteristics: patient: 92; biopsy: 1; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621678

Uncertain

7-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7-3 transversum patient: 7; biopsy: 3; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 7-3 transversum patient: 7; biopsy: 3; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7-3 transversum patient: 7; biopsy: 3; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 7-3 transversum patient: 7; biopsy: 3; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 7; biopsy: 3; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621678
sample_title: 7-3
source_name: transversum
characteristics: patient: 7; biopsy: 3; age: 26; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621679

Uncertain

23-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23-2 sigmoideum patient: 23; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 23-2 sigmoideum patient: 23; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23-2 sigmoideum patient: 23; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 23-2 sigmoideum patient: 23; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 23; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621679
sample_title: 23-2
source_name: sigmoideum
characteristics: patient: 23; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621680

Uncertain

96-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 96-3 descendens patient: 96; biopsy: 3; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 96-3 descendens patient: 96; biopsy: 3; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 96-3 descendens patient: 96; biopsy: 3; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 96-3 descendens patient: 96; biopsy: 3; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 96; biopsy: 3; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621680
sample_title: 96-3
source_name: descendens
characteristics: patient: 96; biopsy: 3; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621681

Uncertain

2-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2-6 rectum patient: 2; biopsy: 6; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 2-6 rectum patient: 2; biopsy: 6; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2-6 rectum patient: 2; biopsy: 6; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 2-6 rectum patient: 2; biopsy: 6; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 2; biopsy: 6; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621681
sample_title: 2-6
source_name: rectum
characteristics: patient: 2; biopsy: 6; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621682

Uncertain

59-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 59-4 transversum patient: 59; biopsy: 4; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 59-4 transversum patient: 59; biopsy: 4; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 59-4 transversum patient: 59; biopsy: 4; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 59-4 transversum patient: 59; biopsy: 4; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 59; biopsy: 4; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621682
sample_title: 59-4
source_name: transversum
characteristics: patient: 59; biopsy: 4; age: 59; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621683

Uncertain

100-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 100-1 ileum patient: 100; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 100-1 ileum patient: 100; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 100-1 ileum patient: 100; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 100-1 ileum patient: 100; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 100; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621683
sample_title: 100-1
source_name: ileum
characteristics: patient: 100; biopsy: 1; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621684

Uncertain

28-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 28-1 ileum patient: 28; biopsy: 1; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 28-1 ileum patient: 28; biopsy: 1; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 28-1 ileum patient: 28; biopsy: 1; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 28-1 ileum patient: 28; biopsy: 1; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 28; biopsy: 1; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621684
sample_title: 28-1
source_name: ileum
characteristics: patient: 28; biopsy: 1; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621685

Uncertain

2-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2-4 descendens patient: 2; biopsy: 4; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 2-4 descendens patient: 2; biopsy: 4; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2-4 descendens patient: 2; biopsy: 4; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 2-4 descendens patient: 2; biopsy: 4; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 2; biopsy: 4; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621685
sample_title: 2-4
source_name: descendens
characteristics: patient: 2; biopsy: 4; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621686

Uncertain

57-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 57-4 rectum patient: 57; biopsy: 4; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 57-4 rectum patient: 57; biopsy: 4; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 57-4 rectum patient: 57; biopsy: 4; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 57-4 rectum patient: 57; biopsy: 4; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 57; biopsy: 4; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621686
sample_title: 57-4
source_name: rectum
characteristics: patient: 57; biopsy: 4; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621687

Uncertain

101-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 101-3 transversum patient: 101; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 101-3 transversum patient: 101; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 101-3 transversum patient: 101; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 101-3 transversum patient: 101; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 101; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621687
sample_title: 101-3
source_name: transversum
characteristics: patient: 101; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621688

Uncertain

29-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 29-3 sigmoideum patient: 29; biopsy: 3; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 29-3 sigmoideum patient: 29; biopsy: 3; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 29-3 sigmoideum patient: 29; biopsy: 3; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 29-3 sigmoideum patient: 29; biopsy: 3; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 29; biopsy: 3; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621688
sample_title: 29-3
source_name: sigmoideum
characteristics: patient: 29; biopsy: 3; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621689

Uncertain

56-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 56-1 NA patient: 56; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE
- 56-1 NA patient: 56; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 56-1 NA patient: 56; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE
- 56-1 NA patient: 56; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE

Source metadata

Source name: NA
Characteristics: patient: 56; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621689
sample_title: 56-1
source_name: NA
characteristics: patient: 56; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE

GSM1621690

Uncertain

6-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6-3 descendens patient: 6; biopsy: 3; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 6-3 descendens patient: 6; biopsy: 3; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6-3 descendens patient: 6; biopsy: 3; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 6-3 descendens patient: 6; biopsy: 3; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 6; biopsy: 3; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621690
sample_title: 6-3
source_name: descendens
characteristics: patient: 6; biopsy: 3; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621691

Uncertain

107-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 107-3 rectum patient: 107; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 107-3 rectum patient: 107; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 107-3 rectum patient: 107; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 107-3 rectum patient: 107; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 107; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621691
sample_title: 107-3
source_name: rectum
characteristics: patient: 107; biopsy: 3; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621692

Uncertain

42-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42-3 transversum patient: 42; biopsy: 3; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 42-3 transversum patient: 42; biopsy: 3; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42-3 transversum patient: 42; biopsy: 3; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 42-3 transversum patient: 42; biopsy: 3; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 42; biopsy: 3; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621692
sample_title: 42-3
source_name: transversum
characteristics: patient: 42; biopsy: 3; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621693

Uncertain

2-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2-1 coecum patient: 2; biopsy: 1; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 2-1 coecum patient: 2; biopsy: 1; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2-1 coecum patient: 2; biopsy: 1; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 2-1 coecum patient: 2; biopsy: 1; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 2; biopsy: 1; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621693
sample_title: 2-1
source_name: coecum
characteristics: patient: 2; biopsy: 1; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621694

Uncertain

67-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 67-G1 bulbus durodenum patient: 67; biopsy: G1; age: 46; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 67-G1 bulbus durodenum patient: 67; biopsy: G1; age: 46; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 67-G1 bulbus durodenum patient: 67; biopsy: G1; age: 46; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 67-G1 bulbus durodenum patient: 67; biopsy: G1; age: 46; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 67; biopsy: G1; age: 46; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621694
sample_title: 67-G1
source_name: bulbus durodenum
characteristics: patient: 67; biopsy: G1; age: 46; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621695

Uncertain

110-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 110-1 sigmoideum patient: 110; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 110-1 sigmoideum patient: 110; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 110-1 sigmoideum patient: 110; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 110-1 sigmoideum patient: 110; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 110; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621695
sample_title: 110-1
source_name: sigmoideum
characteristics: patient: 110; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621696

Uncertain

42-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42-1 ileum patient: 42; biopsy: 1; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 42-1 ileum patient: 42; biopsy: 1; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42-1 ileum patient: 42; biopsy: 1; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 42-1 ileum patient: 42; biopsy: 1; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 42; biopsy: 1; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621696
sample_title: 42-1
source_name: ileum
characteristics: patient: 42; biopsy: 1; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621697

Uncertain

2-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2-3 transversum patient: 2; biopsy: 3; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 2-3 transversum patient: 2; biopsy: 3; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2-3 transversum patient: 2; biopsy: 3; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 2-3 transversum patient: 2; biopsy: 3; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 2; biopsy: 3; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621697
sample_title: 2-3
source_name: transversum
characteristics: patient: 2; biopsy: 3; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621698

Uncertain

58-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 58-2 rectum patient: 58; biopsy: 2; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 58-2 rectum patient: 58; biopsy: 2; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 58-2 rectum patient: 58; biopsy: 2; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 58-2 rectum patient: 58; biopsy: 2; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 58; biopsy: 2; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621698
sample_title: 58-2
source_name: rectum
characteristics: patient: 58; biopsy: 2; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621699

Uncertain

113-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 113-3 sigmoideum patient: 113; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 113-3 sigmoideum patient: 113; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 113-3 sigmoideum patient: 113; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 113-3 sigmoideum patient: 113; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 113; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621699
sample_title: 113-3
source_name: sigmoideum
characteristics: patient: 113; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621700

Uncertain

35-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-2 ascendens patient: 35; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 35-2 ascendens patient: 35; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-2 ascendens patient: 35; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 35-2 ascendens patient: 35; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 35; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621700
sample_title: 35-2
source_name: ascendens
characteristics: patient: 35; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

GSM1621701

Uncertain

2-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2-5 sigmoideum patient: 2; biopsy: 5; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 2-5 sigmoideum patient: 2; biopsy: 5; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2-5 sigmoideum patient: 2; biopsy: 5; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 2-5 sigmoideum patient: 2; biopsy: 5; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 2; biopsy: 5; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621701
sample_title: 2-5
source_name: sigmoideum
characteristics: patient: 2; biopsy: 5; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621702

Uncertain

68-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 68-G1 bulbus durodenum patient: 68; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 68-G1 bulbus durodenum patient: 68; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 68-G1 bulbus durodenum patient: 68; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 68-G1 bulbus durodenum patient: 68; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 68; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621702
sample_title: 68-G1
source_name: bulbus durodenum
characteristics: patient: 68; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621703

Uncertain

117-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 117-1 sigmoideum patient: 117; biopsy: 1; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 117-1 sigmoideum patient: 117; biopsy: 1; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 117-1 sigmoideum patient: 117; biopsy: 1; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 117-1 sigmoideum patient: 117; biopsy: 1; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 117; biopsy: 1; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621703
sample_title: 117-1
source_name: sigmoideum
characteristics: patient: 117; biopsy: 1; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621704

Uncertain

30-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 30-3 rectum patient: 30; biopsy: 3; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 30-3 rectum patient: 30; biopsy: 3; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 30-3 rectum patient: 30; biopsy: 3; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 30-3 rectum patient: 30; biopsy: 3; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 30; biopsy: 3; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621704
sample_title: 30-3
source_name: rectum
characteristics: patient: 30; biopsy: 3; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621705

Uncertain

6-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6-2 transversum patient: 6; biopsy: 2; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 6-2 transversum patient: 6; biopsy: 2; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6-2 transversum patient: 6; biopsy: 2; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 6-2 transversum patient: 6; biopsy: 2; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 6; biopsy: 2; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621705
sample_title: 6-2
source_name: transversum
characteristics: patient: 6; biopsy: 2; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621706

Uncertain

66-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 66-G1 bulbus durodenum patient: 66; biopsy: G1; age: 39; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 66-G1 bulbus durodenum patient: 66; biopsy: G1; age: 39; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 66-G1 bulbus durodenum patient: 66; biopsy: G1; age: 39; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 66-G1 bulbus durodenum patient: 66; biopsy: G1; age: 39; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 66; biopsy: G1; age: 39; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621706
sample_title: 66-G1
source_name: bulbus durodenum
characteristics: patient: 66; biopsy: G1; age: 39; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621707

Uncertain

121-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-2 coecum patient: 121; biopsy: 2; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 121-2 coecum patient: 121; biopsy: 2; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-2 coecum patient: 121; biopsy: 2; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 121-2 coecum patient: 121; biopsy: 2; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 121; biopsy: 2; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621707
sample_title: 121-2
source_name: coecum
characteristics: patient: 121; biopsy: 2; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621708

Uncertain

36-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 36-2 rectum patient: 36; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 36-2 rectum patient: 36; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 36-2 rectum patient: 36; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 36-2 rectum patient: 36; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 36; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621708
sample_title: 36-2
source_name: rectum
characteristics: patient: 36; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621709

Uncertain

5-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-2 ileum patient: 5; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 5-2 ileum patient: 5; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-2 ileum patient: 5; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 5-2 ileum patient: 5; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 5; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621709
sample_title: 5-2
source_name: ileum
characteristics: patient: 5; biopsy: 2; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621710

Uncertain

57-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 57-1 ileum patient: 57; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 57-1 ileum patient: 57; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 57-1 ileum patient: 57; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 57-1 ileum patient: 57; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 57; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621710
sample_title: 57-1
source_name: ileum
characteristics: patient: 57; biopsy: 1; age: 68; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621711

Uncertain

122-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 122-3 rectum patient: 122; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 122-3 rectum patient: 122; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 122-3 rectum patient: 122; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 122-3 rectum patient: 122; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 122; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621711
sample_title: 122-3
source_name: rectum
characteristics: patient: 122; biopsy: 3; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621712

Uncertain

45-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45-6 rectum patient: 45; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 45-6 rectum patient: 45; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45-6 rectum patient: 45; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 45-6 rectum patient: 45; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 45; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621712
sample_title: 45-6
source_name: rectum
characteristics: patient: 45; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621713

Uncertain

5-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-5 ascendens patient: 5; biopsy: 5; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 5-5 ascendens patient: 5; biopsy: 5; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-5 ascendens patient: 5; biopsy: 5; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 5-5 ascendens patient: 5; biopsy: 5; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 5; biopsy: 5; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621713
sample_title: 5-5
source_name: ascendens
characteristics: patient: 5; biopsy: 5; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

GSM1621714

Uncertain

58-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 58-1 sigmoideum patient: 58; biopsy: 1; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 58-1 sigmoideum patient: 58; biopsy: 1; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 58-1 sigmoideum patient: 58; biopsy: 1; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 58-1 sigmoideum patient: 58; biopsy: 1; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 58; biopsy: 1; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621714
sample_title: 58-1
source_name: sigmoideum
characteristics: patient: 58; biopsy: 1; age: 46; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621715

Uncertain

123-8

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-8 rectum patient: 123; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 123-8 rectum patient: 123; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-8 rectum patient: 123; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 123-8 rectum patient: 123; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 123; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621715
sample_title: 123-8
source_name: rectum
characteristics: patient: 123; biopsy: 8; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621716

Uncertain

47-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 47-2 sigmoideum patient: 47; biopsy: 2; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 47-2 sigmoideum patient: 47; biopsy: 2; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 47-2 sigmoideum patient: 47; biopsy: 2; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 47-2 sigmoideum patient: 47; biopsy: 2; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 47; biopsy: 2; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621716
sample_title: 47-2
source_name: sigmoideum
characteristics: patient: 47; biopsy: 2; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621717

Uncertain

5-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-6 transversum patient: 5; biopsy: 6; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 5-6 transversum patient: 5; biopsy: 6; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-6 transversum patient: 5; biopsy: 6; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 5-6 transversum patient: 5; biopsy: 6; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 5; biopsy: 6; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621717
sample_title: 5-6
source_name: transversum
characteristics: patient: 5; biopsy: 6; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621718

Uncertain

54-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 54-1 transversum patient: 54; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 54-1 transversum patient: 54; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 54-1 transversum patient: 54; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 54-1 transversum patient: 54; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 54; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621718
sample_title: 54-1
source_name: transversum
characteristics: patient: 54; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621719

Uncertain

126-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 126-2 rectum patient: 126; biopsy: 2; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 126-2 rectum patient: 126; biopsy: 2; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 126-2 rectum patient: 126; biopsy: 2; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 126-2 rectum patient: 126; biopsy: 2; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 126; biopsy: 2; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621719
sample_title: 126-2
source_name: rectum
characteristics: patient: 126; biopsy: 2; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621720

Uncertain

49-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 49-G1 bulbus durodenum patient: 49; biopsy: G1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: bulbus durodenum
- 49-G1 bulbus durodenum patient: 49; biopsy: G1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 49-G1 bulbus durodenum patient: 49; biopsy: G1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: bulbus durodenum
- 49-G1 bulbus durodenum patient: 49; biopsy: G1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 49; biopsy: G1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621720
sample_title: 49-G1
source_name: bulbus durodenum
characteristics: patient: 49; biopsy: G1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: bulbus durodenum

GSM1621721

Uncertain

2-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2-2 ascendens patient: 2; biopsy: 2; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 2-2 ascendens patient: 2; biopsy: 2; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2-2 ascendens patient: 2; biopsy: 2; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 2-2 ascendens patient: 2; biopsy: 2; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 2; biopsy: 2; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621721
sample_title: 2-2
source_name: ascendens
characteristics: patient: 2; biopsy: 2; age: 53; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621722

Uncertain

69-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE
- 69-2 NA patient: 69; biopsy: 2; gastroscopy: FALSE

Source metadata

Source name: NA
Characteristics: patient: 69; biopsy: 2; gastroscopy: FALSE
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621722
sample_title: 69-2
source_name: NA
characteristics: patient: 69; biopsy: 2; gastroscopy: FALSE

GSM1621723

Uncertain

22-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-5 descendens patient: 22; biopsy: 5; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 22-5 descendens patient: 22; biopsy: 5; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-5 descendens patient: 22; biopsy: 5; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 22-5 descendens patient: 22; biopsy: 5; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 22; biopsy: 5; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621723
sample_title: 22-5
source_name: descendens
characteristics: patient: 22; biopsy: 5; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621724

Uncertain

92-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 92-2 ileum patient: 92; biopsy: 2; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 92-2 ileum patient: 92; biopsy: 2; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 92-2 ileum patient: 92; biopsy: 2; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 92-2 ileum patient: 92; biopsy: 2; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 92; biopsy: 2; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621724
sample_title: 92-2
source_name: ileum
characteristics: patient: 92; biopsy: 2; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621725

Uncertain

5-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-7 descendens patient: 5; biopsy: 7; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 5-7 descendens patient: 5; biopsy: 7; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-7 descendens patient: 5; biopsy: 7; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 5-7 descendens patient: 5; biopsy: 7; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 5; biopsy: 7; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621725
sample_title: 5-7
source_name: descendens
characteristics: patient: 5; biopsy: 7; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621726

Uncertain

23-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23-1 descendens patient: 23; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 23-1 descendens patient: 23; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23-1 descendens patient: 23; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 23-1 descendens patient: 23; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 23; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621726
sample_title: 23-1
source_name: descendens
characteristics: patient: 23; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621727

Uncertain

96-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 96-4 sigmoideum patient: 96; biopsy: 4; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 96-4 sigmoideum patient: 96; biopsy: 4; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 96-4 sigmoideum patient: 96; biopsy: 4; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 96-4 sigmoideum patient: 96; biopsy: 4; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 96; biopsy: 4; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621727
sample_title: 96-4
source_name: sigmoideum
characteristics: patient: 96; biopsy: 4; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621728

Uncertain

5-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-1 ileum patient: 5; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 5-1 ileum patient: 5; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-1 ileum patient: 5; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 5-1 ileum patient: 5; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 5; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621728
sample_title: 5-1
source_name: ileum
characteristics: patient: 5; biopsy: 1; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621729

Uncertain

56-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 56-2 NA patient: 56; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE
- 56-2 NA patient: 56; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 56-2 NA patient: 56; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE
- 56-2 NA patient: 56; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE

Source metadata

Source name: NA
Characteristics: patient: 56; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621729
sample_title: 56-2
source_name: NA
characteristics: patient: 56; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE

GSM1621730

Uncertain

100-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 100-2 ileum patient: 100; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 100-2 ileum patient: 100; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 100-2 ileum patient: 100; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 100-2 ileum patient: 100; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 100; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621730
sample_title: 100-2
source_name: ileum
characteristics: patient: 100; biopsy: 2; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621731

Uncertain

26-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 26-3 sigmoideum patient: 26; biopsy: 3; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 26-3 sigmoideum patient: 26; biopsy: 3; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 26-3 sigmoideum patient: 26; biopsy: 3; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 26-3 sigmoideum patient: 26; biopsy: 3; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 26; biopsy: 3; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621731
sample_title: 26-3
source_name: sigmoideum
characteristics: patient: 26; biopsy: 3; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621732

Uncertain

5-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-3 ileum patient: 5; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 5-3 ileum patient: 5; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-3 ileum patient: 5; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 5-3 ileum patient: 5; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 5; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621732
sample_title: 5-3
source_name: ileum
characteristics: patient: 5; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621733

Uncertain

54-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 54-3 rectum patient: 54; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 54-3 rectum patient: 54; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 54-3 rectum patient: 54; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 54-3 rectum patient: 54; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 54; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621733
sample_title: 54-3
source_name: rectum
characteristics: patient: 54; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621734

Uncertain

101-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 101-4 transversum patient: 101; biopsy: 4; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 101-4 transversum patient: 101; biopsy: 4; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 101-4 transversum patient: 101; biopsy: 4; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 101-4 transversum patient: 101; biopsy: 4; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 101; biopsy: 4; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621734
sample_title: 101-4
source_name: transversum
characteristics: patient: 101; biopsy: 4; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621735

Uncertain

29-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 29-2 descendens patient: 29; biopsy: 2; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 29-2 descendens patient: 29; biopsy: 2; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 29-2 descendens patient: 29; biopsy: 2; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 29-2 descendens patient: 29; biopsy: 2; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 29; biopsy: 2; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621735
sample_title: 29-2
source_name: descendens
characteristics: patient: 29; biopsy: 2; age: 20; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621736

Uncertain

5-9

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-9 rectum patient: 5; biopsy: 9; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 5-9 rectum patient: 5; biopsy: 9; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-9 rectum patient: 5; biopsy: 9; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 5-9 rectum patient: 5; biopsy: 9; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 5; biopsy: 9; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621736
sample_title: 5-9
source_name: rectum
characteristics: patient: 5; biopsy: 9; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621737

Uncertain

61-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 61-G1 bulbus durodenum patient: 61; biopsy: G1; age: 85; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 61-G1 bulbus durodenum patient: 61; biopsy: G1; age: 85; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 61-G1 bulbus durodenum patient: 61; biopsy: G1; age: 85; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 61-G1 bulbus durodenum patient: 61; biopsy: G1; age: 85; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 61; biopsy: G1; age: 85; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621737
sample_title: 61-G1
source_name: bulbus durodenum
characteristics: patient: 61; biopsy: G1; age: 85; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621738

Uncertain

108-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 108-1 transversum patient: 108; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 108-1 transversum patient: 108; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 108-1 transversum patient: 108; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 108-1 transversum patient: 108; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 108; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621738
sample_title: 108-1
source_name: transversum
characteristics: patient: 108; biopsy: 1; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621739

Uncertain

33-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 33-2 ascendens patient: 33; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 33-2 ascendens patient: 33; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 33-2 ascendens patient: 33; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 33-2 ascendens patient: 33; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 33; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621739
sample_title: 33-2
source_name: ascendens
characteristics: patient: 33; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621740

Uncertain

5-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-4 coecum patient: 5; biopsy: 4; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 5-4 coecum patient: 5; biopsy: 4; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-4 coecum patient: 5; biopsy: 4; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 5-4 coecum patient: 5; biopsy: 4; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 5; biopsy: 4; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621740
sample_title: 5-4
source_name: coecum
characteristics: patient: 5; biopsy: 4; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621741

Uncertain

60-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 60-G1 bulbus durodenum patient: 60; biopsy: G1; age: 60; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 60-G1 bulbus durodenum patient: 60; biopsy: G1; age: 60; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 60-G1 bulbus durodenum patient: 60; biopsy: G1; age: 60; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 60-G1 bulbus durodenum patient: 60; biopsy: G1; age: 60; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 60; biopsy: G1; age: 60; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621741
sample_title: 60-G1
source_name: bulbus durodenum
characteristics: patient: 60; biopsy: G1; age: 60; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621742

Uncertain

110-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 110-2 rectum patient: 110; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 110-2 rectum patient: 110; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 110-2 rectum patient: 110; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 110-2 rectum patient: 110; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 110; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621742
sample_title: 110-2
source_name: rectum
characteristics: patient: 110; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621743

Uncertain

44-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 44-1 sigmoideum patient: 44; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 44-1 sigmoideum patient: 44; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 44-1 sigmoideum patient: 44; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 44-1 sigmoideum patient: 44; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 44; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621743
sample_title: 44-1
source_name: sigmoideum
characteristics: patient: 44; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621744

Uncertain

5-8

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5-8 sigmoideum patient: 5; biopsy: 8; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 5-8 sigmoideum patient: 5; biopsy: 8; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5-8 sigmoideum patient: 5; biopsy: 8; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 5-8 sigmoideum patient: 5; biopsy: 8; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 5; biopsy: 8; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621744
sample_title: 5-8
source_name: sigmoideum
characteristics: patient: 5; biopsy: 8; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621745

Uncertain

63-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 63-G1 bulbus durodenum patient: 63; biopsy: G1; age: 40; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 63-G1 bulbus durodenum patient: 63; biopsy: G1; age: 40; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 63-G1 bulbus durodenum patient: 63; biopsy: G1; age: 40; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 63-G1 bulbus durodenum patient: 63; biopsy: G1; age: 40; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 63; biopsy: G1; age: 40; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621745
sample_title: 63-G1
source_name: bulbus durodenum
characteristics: patient: 63; biopsy: G1; age: 40; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621746

Uncertain

113-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 113-4 rectum patient: 113; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 113-4 rectum patient: 113; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 113-4 rectum patient: 113; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 113-4 rectum patient: 113; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 113; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621746
sample_title: 113-4
source_name: rectum
characteristics: patient: 113; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621747

Uncertain

39-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 39-2 sigmoideum patient: 39; biopsy: 2; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 39-2 sigmoideum patient: 39; biopsy: 2; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 39-2 sigmoideum patient: 39; biopsy: 2; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 39-2 sigmoideum patient: 39; biopsy: 2; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 39; biopsy: 2; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621747
sample_title: 39-2
source_name: sigmoideum
characteristics: patient: 39; biopsy: 2; age: 36; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621748

Uncertain

1-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1-1 coecum patient: 1; biopsy: 1; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 1-1 coecum patient: 1; biopsy: 1; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1-1 coecum patient: 1; biopsy: 1; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 1-1 coecum patient: 1; biopsy: 1; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 1; biopsy: 1; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621748
sample_title: 1-1
source_name: coecum
characteristics: patient: 1; biopsy: 1; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621749

Uncertain

64-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 64-G1 bulbus durodenum patient: 64; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 64-G1 bulbus durodenum patient: 64; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 64-G1 bulbus durodenum patient: 64; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 64-G1 bulbus durodenum patient: 64; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 64; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621749
sample_title: 64-G1
source_name: bulbus durodenum
characteristics: patient: 64; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621750

Uncertain

117-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 117-2 rectum patient: 117; biopsy: 2; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 117-2 rectum patient: 117; biopsy: 2; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 117-2 rectum patient: 117; biopsy: 2; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 117-2 rectum patient: 117; biopsy: 2; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 117; biopsy: 2; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621750
sample_title: 117-2
source_name: rectum
characteristics: patient: 117; biopsy: 2; age: 75; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621751

Uncertain

32-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 32-2 ascendens patient: 32; biopsy: 2; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 32-2 ascendens patient: 32; biopsy: 2; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 32-2 ascendens patient: 32; biopsy: 2; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 32-2 ascendens patient: 32; biopsy: 2; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 32; biopsy: 2; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621751
sample_title: 32-2
source_name: ascendens
characteristics: patient: 32; biopsy: 2; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621752

Uncertain

1-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1-3 transversum patient: 1; biopsy: 3; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 1-3 transversum patient: 1; biopsy: 3; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1-3 transversum patient: 1; biopsy: 3; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 1-3 transversum patient: 1; biopsy: 3; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 1; biopsy: 3; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621752
sample_title: 1-3
source_name: transversum
characteristics: patient: 1; biopsy: 3; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621753

Uncertain

54-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 54-2 sigmoideum patient: 54; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 54-2 sigmoideum patient: 54; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 54-2 sigmoideum patient: 54; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 54-2 sigmoideum patient: 54; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 54; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621753
sample_title: 54-2
source_name: sigmoideum
characteristics: patient: 54; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621754

Uncertain

121-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-3 ascendens patient: 121; biopsy: 3; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 121-3 ascendens patient: 121; biopsy: 3; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-3 ascendens patient: 121; biopsy: 3; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 121-3 ascendens patient: 121; biopsy: 3; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 121; biopsy: 3; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621754
sample_title: 121-3
source_name: ascendens
characteristics: patient: 121; biopsy: 3; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621755

Uncertain

40-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40-3 transversum patient: 40; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 40-3 transversum patient: 40; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40-3 transversum patient: 40; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 40-3 transversum patient: 40; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 40; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621755
sample_title: 40-3
source_name: transversum
characteristics: patient: 40; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621756

Uncertain

1-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1-6 rectum patient: 1; biopsy: 6; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 1-6 rectum patient: 1; biopsy: 6; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1-6 rectum patient: 1; biopsy: 6; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 1-6 rectum patient: 1; biopsy: 6; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 1; biopsy: 6; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621756
sample_title: 1-6
source_name: rectum
characteristics: patient: 1; biopsy: 6; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621757

Uncertain

75-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE
- 75-1 NA patient: 75; biopsy: 1; gastroscopy: FALSE

Source metadata

Source name: NA
Characteristics: patient: 75; biopsy: 1; gastroscopy: FALSE
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621757
sample_title: 75-1
source_name: NA
characteristics: patient: 75; biopsy: 1; gastroscopy: FALSE

GSM1621758

Uncertain

123-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-1 valvula patient: 123; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: valvula
- 123-1 valvula patient: 123; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: valvula
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-1 valvula patient: 123; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: valvula
- 123-1 valvula patient: 123; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: valvula

Source metadata

Source name: valvula
Characteristics: patient: 123; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: valvula
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621758
sample_title: 123-1
source_name: valvula
characteristics: patient: 123; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: valvula

GSM1621759

Uncertain

45-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45-3 transversum patient: 45; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 45-3 transversum patient: 45; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45-3 transversum patient: 45; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 45-3 transversum patient: 45; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 45; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621759
sample_title: 45-3
source_name: transversum
characteristics: patient: 45; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621760

Uncertain

3-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-5 descendens patient: 3; biopsy: 5; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 3-5 descendens patient: 3; biopsy: 5; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-5 descendens patient: 3; biopsy: 5; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 3-5 descendens patient: 3; biopsy: 5; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 3; biopsy: 5; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621760
sample_title: 3-5
source_name: descendens
characteristics: patient: 3; biopsy: 5; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621761

Uncertain

124-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 124-1 ileum patient: 124; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 124-1 ileum patient: 124; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 124-1 ileum patient: 124; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 124-1 ileum patient: 124; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 124; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621761
sample_title: 124-1
source_name: ileum
characteristics: patient: 124; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621762

Uncertain

47-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 47-3 rectum patient: 47; biopsy: 3; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 47-3 rectum patient: 47; biopsy: 3; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 47-3 rectum patient: 47; biopsy: 3; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 47-3 rectum patient: 47; biopsy: 3; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 47; biopsy: 3; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621762
sample_title: 47-3
source_name: rectum
characteristics: patient: 47; biopsy: 3; age: 19; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621763

Uncertain

3-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-7 rectum patient: 3; biopsy: 7; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 3-7 rectum patient: 3; biopsy: 7; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-7 rectum patient: 3; biopsy: 7; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 3-7 rectum patient: 3; biopsy: 7; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 3; biopsy: 7; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621763
sample_title: 3-7
source_name: rectum
characteristics: patient: 3; biopsy: 7; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621764

Uncertain

71-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 71-G1 bulbus durodenum patient: 71; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 71-G1 bulbus durodenum patient: 71; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 71-G1 bulbus durodenum patient: 71; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 71-G1 bulbus durodenum patient: 71; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 71; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621764
sample_title: 71-G1
source_name: bulbus durodenum
characteristics: patient: 71; biopsy: G1; age: 37; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621765

Uncertain

126-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 126-3 rectum patient: 126; biopsy: 3; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 126-3 rectum patient: 126; biopsy: 3; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 126-3 rectum patient: 126; biopsy: 3; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 126-3 rectum patient: 126; biopsy: 3; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 126; biopsy: 3; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621765
sample_title: 126-3
source_name: rectum
characteristics: patient: 126; biopsy: 3; age: 43; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621766

Uncertain

49-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 49-1 sigmoideum patient: 49; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 49-1 sigmoideum patient: 49; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 49-1 sigmoideum patient: 49; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 49-1 sigmoideum patient: 49; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 49; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621766
sample_title: 49-1
source_name: sigmoideum
characteristics: patient: 49; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621767

Uncertain

3-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-4 transversum patient: 3; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 3-4 transversum patient: 3; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-4 transversum patient: 3; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 3-4 transversum patient: 3; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 3; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621767
sample_title: 3-4
source_name: transversum
characteristics: patient: 3; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621768

Uncertain

73-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 73-4 rectum patient: 73; biopsy: 4; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: rectum
- 73-4 rectum patient: 73; biopsy: 4; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 73-4 rectum patient: 73; biopsy: 4; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: rectum
- 73-4 rectum patient: 73; biopsy: 4; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 73; biopsy: 4; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621768
sample_title: 73-4
source_name: rectum
characteristics: patient: 73; biopsy: 4; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: rectum

GSM1621769

Uncertain

21-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 21-3 rectum patient: 21; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 21-3 rectum patient: 21; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 21-3 rectum patient: 21; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 21-3 rectum patient: 21; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 21; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621769
sample_title: 21-3
source_name: rectum
characteristics: patient: 21; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621770

Uncertain

92-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 92-3 ascendens patient: 92; biopsy: 3; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 92-3 ascendens patient: 92; biopsy: 3; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 92-3 ascendens patient: 92; biopsy: 3; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 92-3 ascendens patient: 92; biopsy: 3; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 92; biopsy: 3; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621770
sample_title: 92-3
source_name: ascendens
characteristics: patient: 92; biopsy: 3; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621771

Uncertain

3-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-3 ascendens patient: 3; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 3-3 ascendens patient: 3; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-3 ascendens patient: 3; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 3-3 ascendens patient: 3; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 3; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621771
sample_title: 3-3
source_name: ascendens
characteristics: patient: 3; biopsy: 3; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621772

Uncertain

73-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 73-3 sigmoideum patient: 73; biopsy: 3; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: sigmoideum
- 73-3 sigmoideum patient: 73; biopsy: 3; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 73-3 sigmoideum patient: 73; biopsy: 3; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: sigmoideum
- 73-3 sigmoideum patient: 73; biopsy: 3; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 73; biopsy: 3; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621772
sample_title: 73-3
source_name: sigmoideum
characteristics: patient: 73; biopsy: 3; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: sigmoideum

GSM1621773

Uncertain

24-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 24-1 sigmoideum patient: 24; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 24-1 sigmoideum patient: 24; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 24-1 sigmoideum patient: 24; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 24-1 sigmoideum patient: 24; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 24; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621773
sample_title: 24-1
source_name: sigmoideum
characteristics: patient: 24; biopsy: 1; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621774

Uncertain

96-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 96-5 rectum patient: 96; biopsy: 5; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 96-5 rectum patient: 96; biopsy: 5; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 96-5 rectum patient: 96; biopsy: 5; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 96-5 rectum patient: 96; biopsy: 5; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 96; biopsy: 5; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621774
sample_title: 96-5
source_name: rectum
characteristics: patient: 96; biopsy: 5; age: 22; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621775

Uncertain

6-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6-6 rectum patient: 6; biopsy: 6; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 6-6 rectum patient: 6; biopsy: 6; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6-6 rectum patient: 6; biopsy: 6; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 6-6 rectum patient: 6; biopsy: 6; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 6; biopsy: 6; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621775
sample_title: 6-6
source_name: rectum
characteristics: patient: 6; biopsy: 6; age: 68; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621776

Uncertain

72-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 72-G1 bulbus durodenum patient: 72; biopsy: G1; age: 58; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 72-G1 bulbus durodenum patient: 72; biopsy: G1; age: 58; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 72-G1 bulbus durodenum patient: 72; biopsy: G1; age: 58; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 72-G1 bulbus durodenum patient: 72; biopsy: G1; age: 58; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 72; biopsy: G1; age: 58; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621776
sample_title: 72-G1
source_name: bulbus durodenum
characteristics: patient: 72; biopsy: G1; age: 58; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621777

Uncertain

100-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 100-3 ascendens patient: 100; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 100-3 ascendens patient: 100; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 100-3 ascendens patient: 100; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 100-3 ascendens patient: 100; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 100; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621777
sample_title: 100-3
source_name: ascendens
characteristics: patient: 100; biopsy: 3; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621778

Uncertain

26-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 26-2 ileum patient: 26; biopsy: 2; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 26-2 ileum patient: 26; biopsy: 2; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 26-2 ileum patient: 26; biopsy: 2; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 26-2 ileum patient: 26; biopsy: 2; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 26; biopsy: 2; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621778
sample_title: 26-2
source_name: ileum
characteristics: patient: 26; biopsy: 2; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621779

Uncertain

1-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1-2 ascendens patient: 1; biopsy: 2; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 1-2 ascendens patient: 1; biopsy: 2; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1-2 ascendens patient: 1; biopsy: 2; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 1-2 ascendens patient: 1; biopsy: 2; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 1; biopsy: 2; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621779
sample_title: 1-2
source_name: ascendens
characteristics: patient: 1; biopsy: 2; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621780

Uncertain

73-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 73-2 transversum patient: 73; biopsy: 2; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: transversum
- 73-2 transversum patient: 73; biopsy: 2; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 73-2 transversum patient: 73; biopsy: 2; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: transversum
- 73-2 transversum patient: 73; biopsy: 2; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 73; biopsy: 2; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621780
sample_title: 73-2
source_name: transversum
characteristics: patient: 73; biopsy: 2; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: transversum

GSM1621781

Uncertain

101-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 101-5 descendens patient: 101; biopsy: 5; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 101-5 descendens patient: 101; biopsy: 5; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 101-5 descendens patient: 101; biopsy: 5; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 101-5 descendens patient: 101; biopsy: 5; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 101; biopsy: 5; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621781
sample_title: 101-5
source_name: descendens
characteristics: patient: 101; biopsy: 5; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621782

Uncertain

32-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 32-1 ileum patient: 32; biopsy: 1; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 32-1 ileum patient: 32; biopsy: 1; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 32-1 ileum patient: 32; biopsy: 1; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 32-1 ileum patient: 32; biopsy: 1; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 32; biopsy: 1; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621782
sample_title: 32-1
source_name: ileum
characteristics: patient: 32; biopsy: 1; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621783

Uncertain

3-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-2 coecum patient: 3; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 3-2 coecum patient: 3; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-2 coecum patient: 3; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 3-2 coecum patient: 3; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 3; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621783
sample_title: 3-2
source_name: coecum
characteristics: patient: 3; biopsy: 2; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621784

Uncertain

73-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 73-G1 bulbus durodenum patient: 73; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 73-G1 bulbus durodenum patient: 73; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 73-G1 bulbus durodenum patient: 73; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 73-G1 bulbus durodenum patient: 73; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 73; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621784
sample_title: 73-G1
source_name: bulbus durodenum
characteristics: patient: 73; biopsy: G1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621785

Uncertain

108-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 108-2 sigmoideum patient: 108; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 108-2 sigmoideum patient: 108; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 108-2 sigmoideum patient: 108; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 108-2 sigmoideum patient: 108; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 108; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621785
sample_title: 108-2
source_name: sigmoideum
characteristics: patient: 108; biopsy: 2; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621786

Uncertain

35-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-7 rectum patient: 35; biopsy: 7; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 35-7 rectum patient: 35; biopsy: 7; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-7 rectum patient: 35; biopsy: 7; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 35-7 rectum patient: 35; biopsy: 7; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 35; biopsy: 7; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621786
sample_title: 35-7
source_name: rectum
characteristics: patient: 35; biopsy: 7; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621787

Uncertain

3-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-1 ileum patient: 3; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 3-1 ileum patient: 3; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-1 ileum patient: 3; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 3-1 ileum patient: 3; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 3; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621787
sample_title: 3-1
source_name: ileum
characteristics: patient: 3; biopsy: 1; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621788

Uncertain

74-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 74-1 ileum patient: 74; biopsy: 1; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 74-1 ileum patient: 74; biopsy: 1; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 74-1 ileum patient: 74; biopsy: 1; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 74-1 ileum patient: 74; biopsy: 1; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 74; biopsy: 1; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621788
sample_title: 74-1
source_name: ileum
characteristics: patient: 74; biopsy: 1; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621789

Uncertain

111-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 111-1 ileum patient: 111; biopsy: 1; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 111-1 ileum patient: 111; biopsy: 1; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 111-1 ileum patient: 111; biopsy: 1; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 111-1 ileum patient: 111; biopsy: 1; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 111; biopsy: 1; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621789
sample_title: 111-1
source_name: ileum
characteristics: patient: 111; biopsy: 1; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621790

Uncertain

40-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40-4 descendens patient: 40; biopsy: 4; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 40-4 descendens patient: 40; biopsy: 4; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40-4 descendens patient: 40; biopsy: 4; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 40-4 descendens patient: 40; biopsy: 4; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 40; biopsy: 4; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621790
sample_title: 40-4
source_name: descendens
characteristics: patient: 40; biopsy: 4; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621791

Uncertain

1-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1-5 sigmoideum patient: 1; biopsy: 5; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 1-5 sigmoideum patient: 1; biopsy: 5; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1-5 sigmoideum patient: 1; biopsy: 5; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 1-5 sigmoideum patient: 1; biopsy: 5; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 1; biopsy: 5; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621791
sample_title: 1-5
source_name: sigmoideum
characteristics: patient: 1; biopsy: 5; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621792

Uncertain

73-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 73-1 ascendens patient: 73; biopsy: 1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: ascendens
- 73-1 ascendens patient: 73; biopsy: 1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 73-1 ascendens patient: 73; biopsy: 1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: ascendens
- 73-1 ascendens patient: 73; biopsy: 1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 73; biopsy: 1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621792
sample_title: 73-1
source_name: ascendens
characteristics: patient: 73; biopsy: 1; age: 65; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: ascendens

GSM1621793

Uncertain

115-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 115-1 sigmoideum patient: 115; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 115-1 sigmoideum patient: 115; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 115-1 sigmoideum patient: 115; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 115-1 sigmoideum patient: 115; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 115; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621793
sample_title: 115-1
source_name: sigmoideum
characteristics: patient: 115; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621794

Uncertain

30-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 30-1 descendens patient: 30; biopsy: 1; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 30-1 descendens patient: 30; biopsy: 1; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 30-1 descendens patient: 30; biopsy: 1; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 30-1 descendens patient: 30; biopsy: 1; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 30; biopsy: 1; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621794
sample_title: 30-1
source_name: descendens
characteristics: patient: 30; biopsy: 1; age: 18; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621795

Uncertain

3-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3-6 sigmoideum patient: 3; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 3-6 sigmoideum patient: 3; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3-6 sigmoideum patient: 3; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 3-6 sigmoideum patient: 3; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 3; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621795
sample_title: 3-6
source_name: sigmoideum
characteristics: patient: 3; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621796

Uncertain

74-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 74-3 transversum patient: 74; biopsy: 3; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 74-3 transversum patient: 74; biopsy: 3; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 74-3 transversum patient: 74; biopsy: 3; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 74-3 transversum patient: 74; biopsy: 3; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 74; biopsy: 3; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621796
sample_title: 74-3
source_name: transversum
characteristics: patient: 74; biopsy: 3; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621797

Uncertain

120-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 120-1 coecum patient: 120; biopsy: 1; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 120-1 coecum patient: 120; biopsy: 1; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 120-1 coecum patient: 120; biopsy: 1; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 120-1 coecum patient: 120; biopsy: 1; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 120; biopsy: 1; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621797
sample_title: 120-1
source_name: coecum
characteristics: patient: 120; biopsy: 1; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621798

Uncertain

33-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 33-4 sigmoideum patient: 33; biopsy: 4; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 33-4 sigmoideum patient: 33; biopsy: 4; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 33-4 sigmoideum patient: 33; biopsy: 4; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 33-4 sigmoideum patient: 33; biopsy: 4; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 33; biopsy: 4; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621798
sample_title: 33-4
source_name: sigmoideum
characteristics: patient: 33; biopsy: 4; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621799

Uncertain

4-1A

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-1A ileum patient: 4; biopsy: 1A; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 4-1A ileum patient: 4; biopsy: 1A; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-1A ileum patient: 4; biopsy: 1A; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 4-1A ileum patient: 4; biopsy: 1A; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 4; biopsy: 1A; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621799
sample_title: 4-1A
source_name: ileum
characteristics: patient: 4; biopsy: 1A; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621800

Uncertain

74-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 74-4 descendens patient: 74; biopsy: 4; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 74-4 descendens patient: 74; biopsy: 4; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 74-4 descendens patient: 74; biopsy: 4; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 74-4 descendens patient: 74; biopsy: 4; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 74; biopsy: 4; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621800
sample_title: 74-4
source_name: descendens
characteristics: patient: 74; biopsy: 4; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621801

Uncertain

121-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-4 transversum patient: 121; biopsy: 4; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 121-4 transversum patient: 121; biopsy: 4; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-4 transversum patient: 121; biopsy: 4; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 121-4 transversum patient: 121; biopsy: 4; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 121; biopsy: 4; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621801
sample_title: 121-4
source_name: transversum
characteristics: patient: 121; biopsy: 4; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621802

Uncertain

40-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40-6 rectum patient: 40; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 40-6 rectum patient: 40; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40-6 rectum patient: 40; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 40-6 rectum patient: 40; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 40; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621802
sample_title: 40-6
source_name: rectum
characteristics: patient: 40; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621803

Uncertain

4-1B

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-1B coecum patient: 4; biopsy: 1B; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 4-1B coecum patient: 4; biopsy: 1B; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-1B coecum patient: 4; biopsy: 1B; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 4-1B coecum patient: 4; biopsy: 1B; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 4; biopsy: 1B; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621803
sample_title: 4-1B
source_name: coecum
characteristics: patient: 4; biopsy: 1B; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621804

Uncertain

74-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 74-5 sigmoideum patient: 74; biopsy: 5; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 74-5 sigmoideum patient: 74; biopsy: 5; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 74-5 sigmoideum patient: 74; biopsy: 5; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 74-5 sigmoideum patient: 74; biopsy: 5; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 74; biopsy: 5; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621804
sample_title: 74-5
source_name: sigmoideum
characteristics: patient: 74; biopsy: 5; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621805

Uncertain

123-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-2 coecum patient: 123; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 123-2 coecum patient: 123; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-2 coecum patient: 123; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 123-2 coecum patient: 123; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 123; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621805
sample_title: 123-2
source_name: coecum
characteristics: patient: 123; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621806

Uncertain

45-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45-4 descendens patient: 45; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 45-4 descendens patient: 45; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45-4 descendens patient: 45; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 45-4 descendens patient: 45; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 45; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621806
sample_title: 45-4
source_name: descendens
characteristics: patient: 45; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621807

Uncertain

4-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-4 descendens patient: 4; biopsy: 4; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 4-4 descendens patient: 4; biopsy: 4; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-4 descendens patient: 4; biopsy: 4; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 4-4 descendens patient: 4; biopsy: 4; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 4; biopsy: 4; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621807
sample_title: 4-4
source_name: descendens
characteristics: patient: 4; biopsy: 4; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621808

Uncertain

74-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 74-6 rectum patient: 74; biopsy: 6; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 74-6 rectum patient: 74; biopsy: 6; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 74-6 rectum patient: 74; biopsy: 6; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 74-6 rectum patient: 74; biopsy: 6; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 74; biopsy: 6; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621808
sample_title: 74-6
source_name: rectum
characteristics: patient: 74; biopsy: 6; age: 46; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621809

Uncertain

124-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 124-2 ascendens patient: 124; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 124-2 ascendens patient: 124; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 124-2 ascendens patient: 124; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 124-2 ascendens patient: 124; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 124; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621809
sample_title: 124-2
source_name: ascendens
characteristics: patient: 124; biopsy: 2; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621810

Uncertain

46-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 46-3 rectum patient: 46; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 46-3 rectum patient: 46; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 46-3 rectum patient: 46; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 46-3 rectum patient: 46; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 46; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621810
sample_title: 46-3
source_name: rectum
characteristics: patient: 46; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621811

Uncertain

4-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-3 transversum patient: 4; biopsy: 3; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 4-3 transversum patient: 4; biopsy: 3; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-3 transversum patient: 4; biopsy: 3; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 4-3 transversum patient: 4; biopsy: 3; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 4; biopsy: 3; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621811
sample_title: 4-3
source_name: transversum
characteristics: patient: 4; biopsy: 3; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621812

Uncertain

75-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Case: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
Control: specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE
- 75-2 NA patient: 75; biopsy: 2; gastroscopy: FALSE

Source metadata

Source name: NA
Characteristics: patient: 75; biopsy: 2; gastroscopy: FALSE
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621812
sample_title: 75-2
source_name: NA
characteristics: patient: 75; biopsy: 2; gastroscopy: FALSE

GSM1621813

Uncertain

127-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 127-2 descendens patient: 127; biopsy: 2; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 127-2 descendens patient: 127; biopsy: 2; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 127-2 descendens patient: 127; biopsy: 2; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 127-2 descendens patient: 127; biopsy: 2; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 127; biopsy: 2; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621813
sample_title: 127-2
source_name: descendens
characteristics: patient: 127; biopsy: 2; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621814

Uncertain

4-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-2 ascendens patient: 4; biopsy: 2; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 4-2 ascendens patient: 4; biopsy: 2; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-2 ascendens patient: 4; biopsy: 2; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 4-2 ascendens patient: 4; biopsy: 2; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 4; biopsy: 2; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621814
sample_title: 4-2
source_name: ascendens
characteristics: patient: 4; biopsy: 2; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621815

Uncertain

78-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 78-G1 bulbus durodenum patient: 78; biopsy: G1; age: 71; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 78-G1 bulbus durodenum patient: 78; biopsy: G1; age: 71; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 78-G1 bulbus durodenum patient: 78; biopsy: G1; age: 71; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 78-G1 bulbus durodenum patient: 78; biopsy: G1; age: 71; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 78; biopsy: G1; age: 71; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621815
sample_title: 78-G1
source_name: bulbus durodenum
characteristics: patient: 78; biopsy: G1; age: 71; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621816

Uncertain

21-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 21-2 sigmoideum patient: 21; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 21-2 sigmoideum patient: 21; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 21-2 sigmoideum patient: 21; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 21-2 sigmoideum patient: 21; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 21; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621816
sample_title: 21-2
source_name: sigmoideum
characteristics: patient: 21; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621817

Uncertain

92-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 92-4 descendens patient: 92; biopsy: 4; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 92-4 descendens patient: 92; biopsy: 4; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 92-4 descendens patient: 92; biopsy: 4; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 92-4 descendens patient: 92; biopsy: 4; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 92; biopsy: 4; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621817
sample_title: 92-4
source_name: descendens
characteristics: patient: 92; biopsy: 4; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621818

Uncertain

4-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-6 rectum patient: 4; biopsy: 6; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 4-6 rectum patient: 4; biopsy: 6; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-6 rectum patient: 4; biopsy: 6; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 4-6 rectum patient: 4; biopsy: 6; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 4; biopsy: 6; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621818
sample_title: 4-6
source_name: rectum
characteristics: patient: 4; biopsy: 6; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621819

Uncertain

77-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 77-G1 bulbus durodenum patient: 77; biopsy: G1; age: 75; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 77-G1 bulbus durodenum patient: 77; biopsy: G1; age: 75; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 77-G1 bulbus durodenum patient: 77; biopsy: G1; age: 75; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 77-G1 bulbus durodenum patient: 77; biopsy: G1; age: 75; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 77; biopsy: G1; age: 75; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621819
sample_title: 77-G1
source_name: bulbus durodenum
characteristics: patient: 77; biopsy: G1; age: 75; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621820

Uncertain

24-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 24-2 sigmoideum patient: 24; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 24-2 sigmoideum patient: 24; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 24-2 sigmoideum patient: 24; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 24-2 sigmoideum patient: 24; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 24; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621820
sample_title: 24-2
source_name: sigmoideum
characteristics: patient: 24; biopsy: 2; age: 70; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621821

Uncertain

97-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 97-1 transversum patient: 97; biopsy: 1; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 97-1 transversum patient: 97; biopsy: 1; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 97-1 transversum patient: 97; biopsy: 1; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 97-1 transversum patient: 97; biopsy: 1; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 97; biopsy: 1; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621821
sample_title: 97-1
source_name: transversum
characteristics: patient: 97; biopsy: 1; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621822

Uncertain

4-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4-5 sigmoideum patient: 4; biopsy: 5; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 4-5 sigmoideum patient: 4; biopsy: 5; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4-5 sigmoideum patient: 4; biopsy: 5; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 4-5 sigmoideum patient: 4; biopsy: 5; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 4; biopsy: 5; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621822
sample_title: 4-5
source_name: sigmoideum
characteristics: patient: 4; biopsy: 5; age: 66; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621823

Uncertain

79-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 79-G1 bulbus durodenum patient: 79; biopsy: G1; age: 23; diagnosis: CD; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 79-G1 bulbus durodenum patient: 79; biopsy: G1; age: 23; diagnosis: CD; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 79-G1 bulbus durodenum patient: 79; biopsy: G1; age: 23; diagnosis: CD; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 79-G1 bulbus durodenum patient: 79; biopsy: G1; age: 23; diagnosis: CD; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 79; biopsy: G1; age: 23; diagnosis: CD; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621823
sample_title: 79-G1
source_name: bulbus durodenum
characteristics: patient: 79; biopsy: G1; age: 23; diagnosis: CD; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621824

Uncertain

26-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 26-1 ileum patient: 26; biopsy: 1; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 26-1 ileum patient: 26; biopsy: 1; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 26-1 ileum patient: 26; biopsy: 1; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 26-1 ileum patient: 26; biopsy: 1; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 26; biopsy: 1; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621824
sample_title: 26-1
source_name: ileum
characteristics: patient: 26; biopsy: 1; age: 22; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621825

Uncertain

1-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1-4 descendens patient: 1; biopsy: 4; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 1-4 descendens patient: 1; biopsy: 4; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1-4 descendens patient: 1; biopsy: 4; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 1-4 descendens patient: 1; biopsy: 4; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 1; biopsy: 4; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621825
sample_title: 1-4
source_name: descendens
characteristics: patient: 1; biopsy: 4; age: 55; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621826

Uncertain

76-G1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 76-G1 bulbus durodenum patient: 76; biopsy: G1; age: 49; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 76-G1 bulbus durodenum patient: 76; biopsy: G1; age: 49; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 76-G1 bulbus durodenum patient: 76; biopsy: G1; age: 49; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
- 76-G1 bulbus durodenum patient: 76; biopsy: G1; age: 49; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

Source metadata

Source name: bulbus durodenum
Characteristics: patient: 76; biopsy: G1; age: 49; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621826
sample_title: 76-G1
source_name: bulbus durodenum
characteristics: patient: 76; biopsy: G1; age: 49; diagnosis: Control; gastroscopy: TRUE; inflammation: non; tissue: bulbus durodenum

GSM1621827

Uncertain

101-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 101-6 sigmoideum patient: 101; biopsy: 6; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 101-6 sigmoideum patient: 101; biopsy: 6; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 101-6 sigmoideum patient: 101; biopsy: 6; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 101-6 sigmoideum patient: 101; biopsy: 6; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 101; biopsy: 6; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621827
sample_title: 101-6
source_name: sigmoideum
characteristics: patient: 101; biopsy: 6; age: 59; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621828

Uncertain

32-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 32-3 descendens patient: 32; biopsy: 3; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 32-3 descendens patient: 32; biopsy: 3; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 32-3 descendens patient: 32; biopsy: 3; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 32-3 descendens patient: 32; biopsy: 3; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 32; biopsy: 3; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621828
sample_title: 32-3
source_name: descendens
characteristics: patient: 32; biopsy: 3; age: 26; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621829

Uncertain

15-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-7 rectum patient: 15; biopsy: 7; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 15-7 rectum patient: 15; biopsy: 7; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-7 rectum patient: 15; biopsy: 7; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 15-7 rectum patient: 15; biopsy: 7; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 15; biopsy: 7; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621829
sample_title: 15-7
source_name: rectum
characteristics: patient: 15; biopsy: 7; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621830

Uncertain

80-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 80-1 ileum patient: 80; biopsy: 1; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 80-1 ileum patient: 80; biopsy: 1; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 80-1 ileum patient: 80; biopsy: 1; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 80-1 ileum patient: 80; biopsy: 1; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 80; biopsy: 1; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621830
sample_title: 80-1
source_name: ileum
characteristics: patient: 80; biopsy: 1; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621831

Uncertain

108-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 108-3 rectum patient: 108; biopsy: 3; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 108-3 rectum patient: 108; biopsy: 3; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 108-3 rectum patient: 108; biopsy: 3; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 108-3 rectum patient: 108; biopsy: 3; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 108; biopsy: 3; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621831
sample_title: 108-3
source_name: rectum
characteristics: patient: 108; biopsy: 3; age: 69; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621832

Uncertain

42-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42-2 ascendens patient: 42; biopsy: 2; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 42-2 ascendens patient: 42; biopsy: 2; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42-2 ascendens patient: 42; biopsy: 2; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 42-2 ascendens patient: 42; biopsy: 2; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 42; biopsy: 2; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621832
sample_title: 42-2
source_name: ascendens
characteristics: patient: 42; biopsy: 2; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621833

Uncertain

15-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-6 sigmoideum patient: 15; biopsy: 6; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 15-6 sigmoideum patient: 15; biopsy: 6; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-6 sigmoideum patient: 15; biopsy: 6; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 15-6 sigmoideum patient: 15; biopsy: 6; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 15; biopsy: 6; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621833
sample_title: 15-6
source_name: sigmoideum
characteristics: patient: 15; biopsy: 6; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621834

Uncertain

80-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 80-2 coecum patient: 80; biopsy: 2; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 80-2 coecum patient: 80; biopsy: 2; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 80-2 coecum patient: 80; biopsy: 2; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 80-2 coecum patient: 80; biopsy: 2; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 80; biopsy: 2; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621834
sample_title: 80-2
source_name: coecum
characteristics: patient: 80; biopsy: 2; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621835

Uncertain

111-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 111-2 ileum patient: 111; biopsy: 2; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 111-2 ileum patient: 111; biopsy: 2; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 111-2 ileum patient: 111; biopsy: 2; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 111-2 ileum patient: 111; biopsy: 2; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 111; biopsy: 2; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621835
sample_title: 111-2
source_name: ileum
characteristics: patient: 111; biopsy: 2; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621836

Uncertain

35-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-5 transversum patient: 35; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 35-5 transversum patient: 35; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-5 transversum patient: 35; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 35-5 transversum patient: 35; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 35; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621836
sample_title: 35-5
source_name: transversum
characteristics: patient: 35; biopsy: 5; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621837

Uncertain

15-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-5 descendens patient: 15; biopsy: 5; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 15-5 descendens patient: 15; biopsy: 5; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-5 descendens patient: 15; biopsy: 5; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 15-5 descendens patient: 15; biopsy: 5; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 15; biopsy: 5; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621837
sample_title: 15-5
source_name: descendens
characteristics: patient: 15; biopsy: 5; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621838

Uncertain

80-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 80-3 transversum patient: 80; biopsy: 3; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 80-3 transversum patient: 80; biopsy: 3; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 80-3 transversum patient: 80; biopsy: 3; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 80-3 transversum patient: 80; biopsy: 3; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 80; biopsy: 3; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621838
sample_title: 80-3
source_name: transversum
characteristics: patient: 80; biopsy: 3; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621839

Uncertain

115-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 115-2 rectum patient: 115; biopsy: 2; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 115-2 rectum patient: 115; biopsy: 2; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 115-2 rectum patient: 115; biopsy: 2; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 115-2 rectum patient: 115; biopsy: 2; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 115; biopsy: 2; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621839
sample_title: 115-2
source_name: rectum
characteristics: patient: 115; biopsy: 2; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621840

Uncertain

33-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 33-3 descendens patient: 33; biopsy: 3; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 33-3 descendens patient: 33; biopsy: 3; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 33-3 descendens patient: 33; biopsy: 3; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 33-3 descendens patient: 33; biopsy: 3; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 33; biopsy: 3; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621840
sample_title: 33-3
source_name: descendens
characteristics: patient: 33; biopsy: 3; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621841

Uncertain

15-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-4 transversum patient: 15; biopsy: 4; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 15-4 transversum patient: 15; biopsy: 4; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-4 transversum patient: 15; biopsy: 4; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 15-4 transversum patient: 15; biopsy: 4; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 15; biopsy: 4; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621841
sample_title: 15-4
source_name: transversum
characteristics: patient: 15; biopsy: 4; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621842

Uncertain

80-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 80-4 descendens patient: 80; biopsy: 4; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 80-4 descendens patient: 80; biopsy: 4; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 80-4 descendens patient: 80; biopsy: 4; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 80-4 descendens patient: 80; biopsy: 4; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 80; biopsy: 4; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621842
sample_title: 80-4
source_name: descendens
characteristics: patient: 80; biopsy: 4; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621843

Uncertain

120-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 120-2 ascendens patient: 120; biopsy: 2; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 120-2 ascendens patient: 120; biopsy: 2; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 120-2 ascendens patient: 120; biopsy: 2; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 120-2 ascendens patient: 120; biopsy: 2; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 120; biopsy: 2; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621843
sample_title: 120-2
source_name: ascendens
characteristics: patient: 120; biopsy: 2; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621844

Uncertain

35-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-3 ascendens patient: 35; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 35-3 ascendens patient: 35; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-3 ascendens patient: 35; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
- 35-3 ascendens patient: 35; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 35; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621844
sample_title: 35-3
source_name: ascendens
characteristics: patient: 35; biopsy: 3; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: ascendens

GSM1621845

Uncertain

15-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-3 ascendens patient: 15; biopsy: 3; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 15-3 ascendens patient: 15; biopsy: 3; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-3 ascendens patient: 15; biopsy: 3; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 15-3 ascendens patient: 15; biopsy: 3; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 15; biopsy: 3; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621845
sample_title: 15-3
source_name: ascendens
characteristics: patient: 15; biopsy: 3; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621846

Uncertain

80-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 80-5 sigmoideum patient: 80; biopsy: 5; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 80-5 sigmoideum patient: 80; biopsy: 5; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 80-5 sigmoideum patient: 80; biopsy: 5; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 80-5 sigmoideum patient: 80; biopsy: 5; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 80; biopsy: 5; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621846
sample_title: 80-5
source_name: sigmoideum
characteristics: patient: 80; biopsy: 5; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621847

Uncertain

121-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-5 descendens patient: 121; biopsy: 5; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 121-5 descendens patient: 121; biopsy: 5; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-5 descendens patient: 121; biopsy: 5; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 121-5 descendens patient: 121; biopsy: 5; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 121; biopsy: 5; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621847
sample_title: 121-5
source_name: descendens
characteristics: patient: 121; biopsy: 5; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621848

Uncertain

44-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 44-2 sigmoideum patient: 44; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 44-2 sigmoideum patient: 44; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 44-2 sigmoideum patient: 44; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 44-2 sigmoideum patient: 44; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 44; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621848
sample_title: 44-2
source_name: sigmoideum
characteristics: patient: 44; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621849

Uncertain

15-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-2 coecum patient: 15; biopsy: 2; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
- 15-2 coecum patient: 15; biopsy: 2; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-2 coecum patient: 15; biopsy: 2; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
- 15-2 coecum patient: 15; biopsy: 2; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 15; biopsy: 2; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621849
sample_title: 15-2
source_name: coecum
characteristics: patient: 15; biopsy: 2; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum

GSM1621850

Uncertain

80-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 80-6 rectum patient: 80; biopsy: 6; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 80-6 rectum patient: 80; biopsy: 6; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 80-6 rectum patient: 80; biopsy: 6; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 80-6 rectum patient: 80; biopsy: 6; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 80; biopsy: 6; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621850
sample_title: 80-6
source_name: rectum
characteristics: patient: 80; biopsy: 6; age: 52; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621851

Uncertain

123-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-3 ascendens patient: 123; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 123-3 ascendens patient: 123; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-3 ascendens patient: 123; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 123-3 ascendens patient: 123; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 123; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621851
sample_title: 123-3
source_name: ascendens
characteristics: patient: 123; biopsy: 3; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621852

Uncertain

45-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45-1 ileum patient: 45; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 45-1 ileum patient: 45; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45-1 ileum patient: 45; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 45-1 ileum patient: 45; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 45; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621852
sample_title: 45-1
source_name: ileum
characteristics: patient: 45; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621853

Uncertain

15-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15-1 ileum patient: 15; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 15-1 ileum patient: 15; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15-1 ileum patient: 15; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 15-1 ileum patient: 15; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 15; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621853
sample_title: 15-1
source_name: ileum
characteristics: patient: 15; biopsy: 1; age: 37; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621854

Uncertain

81-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 81-1 ileum patient: 81; biopsy: 1; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 81-1 ileum patient: 81; biopsy: 1; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 81-1 ileum patient: 81; biopsy: 1; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 81-1 ileum patient: 81; biopsy: 1; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 81; biopsy: 1; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621854
sample_title: 81-1
source_name: ileum
characteristics: patient: 81; biopsy: 1; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621855

Uncertain

124-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 124-3 descendens patient: 124; biopsy: 3; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 124-3 descendens patient: 124; biopsy: 3; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 124-3 descendens patient: 124; biopsy: 3; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 124-3 descendens patient: 124; biopsy: 3; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 124; biopsy: 3; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621855
sample_title: 124-3
source_name: descendens
characteristics: patient: 124; biopsy: 3; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621856

Uncertain

46-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 46-2 sigmoideum patient: 46; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 46-2 sigmoideum patient: 46; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 46-2 sigmoideum patient: 46; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 46-2 sigmoideum patient: 46; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 46; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621856
sample_title: 46-2
source_name: sigmoideum
characteristics: patient: 46; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621857

Uncertain

16-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 16-2 sigmoideum patient: 16; biopsy: 2; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 16-2 sigmoideum patient: 16; biopsy: 2; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 16-2 sigmoideum patient: 16; biopsy: 2; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 16-2 sigmoideum patient: 16; biopsy: 2; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 16; biopsy: 2; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621857
sample_title: 16-2
source_name: sigmoideum
characteristics: patient: 16; biopsy: 2; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621858

Uncertain

81-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 81-2 coecum patient: 81; biopsy: 2; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 81-2 coecum patient: 81; biopsy: 2; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 81-2 coecum patient: 81; biopsy: 2; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 81-2 coecum patient: 81; biopsy: 2; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 81; biopsy: 2; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621858
sample_title: 81-2
source_name: coecum
characteristics: patient: 81; biopsy: 2; age: 38; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621859

Uncertain

127-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 127-3 sigmoideum patient: 127; biopsy: 3; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 127-3 sigmoideum patient: 127; biopsy: 3; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 127-3 sigmoideum patient: 127; biopsy: 3; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 127-3 sigmoideum patient: 127; biopsy: 3; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 127; biopsy: 3; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621859
sample_title: 127-3
source_name: sigmoideum
characteristics: patient: 127; biopsy: 3; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621860

Uncertain

53-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 53-6 rectum patient: 53; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 53-6 rectum patient: 53; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 53-6 rectum patient: 53; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 53-6 rectum patient: 53; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 53; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621860
sample_title: 53-6
source_name: rectum
characteristics: patient: 53; biopsy: 6; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621861

Uncertain

17-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 17-2 sigmoideum patient: 17; biopsy: 2; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 17-2 sigmoideum patient: 17; biopsy: 2; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 17-2 sigmoideum patient: 17; biopsy: 2; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 17-2 sigmoideum patient: 17; biopsy: 2; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 17; biopsy: 2; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621861
sample_title: 17-2
source_name: sigmoideum
characteristics: patient: 17; biopsy: 2; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621862

Uncertain

21-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 21-1 descendens patient: 21; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 21-1 descendens patient: 21; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 21-1 descendens patient: 21; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 21-1 descendens patient: 21; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 21; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621862
sample_title: 21-1
source_name: descendens
characteristics: patient: 21; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621863

Uncertain

92-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 92-5 sigmoideum patient: 92; biopsy: 5; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 92-5 sigmoideum patient: 92; biopsy: 5; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 92-5 sigmoideum patient: 92; biopsy: 5; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 92-5 sigmoideum patient: 92; biopsy: 5; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 92; biopsy: 5; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621863
sample_title: 92-5
source_name: sigmoideum
characteristics: patient: 92; biopsy: 5; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621864

Uncertain

16-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 16-1 descendens patient: 16; biopsy: 1; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 16-1 descendens patient: 16; biopsy: 1; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 16-1 descendens patient: 16; biopsy: 1; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 16-1 descendens patient: 16; biopsy: 1; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 16; biopsy: 1; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621864
sample_title: 16-1
source_name: descendens
characteristics: patient: 16; biopsy: 1; age: 40; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621865

Uncertain

82-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 82-1 descendens patient: 82; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: descendens
- 82-1 descendens patient: 82; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 82-1 descendens patient: 82; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: descendens
- 82-1 descendens patient: 82; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 82; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621865
sample_title: 82-1
source_name: descendens
characteristics: patient: 82; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: descendens

GSM1621866

Uncertain

25-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 25-3 transversum patient: 25; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 25-3 transversum patient: 25; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 25-3 transversum patient: 25; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 25-3 transversum patient: 25; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 25; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621866
sample_title: 25-3
source_name: transversum
characteristics: patient: 25; biopsy: 3; age: 31; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621867

Uncertain

97-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 97-2 descendens patient: 97; biopsy: 2; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 97-2 descendens patient: 97; biopsy: 2; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 97-2 descendens patient: 97; biopsy: 2; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 97-2 descendens patient: 97; biopsy: 2; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 97; biopsy: 2; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621867
sample_title: 97-2
source_name: descendens
characteristics: patient: 97; biopsy: 2; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621868

Uncertain

14-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14-6 rectum patient: 14; biopsy: 6; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 14-6 rectum patient: 14; biopsy: 6; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14-6 rectum patient: 14; biopsy: 6; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 14-6 rectum patient: 14; biopsy: 6; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 14; biopsy: 6; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621868
sample_title: 14-6
source_name: rectum
characteristics: patient: 14; biopsy: 6; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621869

Uncertain

82-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 82-2 sigmoideum patient: 82; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: sigmoideum
- 82-2 sigmoideum patient: 82; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 82-2 sigmoideum patient: 82; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: sigmoideum
- 82-2 sigmoideum patient: 82; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 82; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621869
sample_title: 82-2
source_name: sigmoideum
characteristics: patient: 82; biopsy: 2; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: sigmoideum

GSM1621870

Uncertain

100-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 100-5 descendens patient: 100; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 100-5 descendens patient: 100; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 100-5 descendens patient: 100; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 100-5 descendens patient: 100; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 100; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621870
sample_title: 100-5
source_name: descendens
characteristics: patient: 100; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621871

Uncertain

28-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 28-2 sigmoideum patient: 28; biopsy: 2; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 28-2 sigmoideum patient: 28; biopsy: 2; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 28-2 sigmoideum patient: 28; biopsy: 2; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 28-2 sigmoideum patient: 28; biopsy: 2; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 28; biopsy: 2; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621871
sample_title: 28-2
source_name: sigmoideum
characteristics: patient: 28; biopsy: 2; age: 21; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621872

Uncertain

14-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14-5 sigmoideum patient: 14; biopsy: 5; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 14-5 sigmoideum patient: 14; biopsy: 5; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14-5 sigmoideum patient: 14; biopsy: 5; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 14-5 sigmoideum patient: 14; biopsy: 5; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 14; biopsy: 5; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621872
sample_title: 14-5
source_name: sigmoideum
characteristics: patient: 14; biopsy: 5; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621873

Uncertain

82-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 82-3 rectum patient: 82; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: rectum
- 82-3 rectum patient: 82; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 82-3 rectum patient: 82; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: rectum
- 82-3 rectum patient: 82; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 82; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621873
sample_title: 82-3
source_name: rectum
characteristics: patient: 82; biopsy: 3; age: 38; diagnosis: UC; gastroscopy: FALSE; tissue: rectum

GSM1621874

Uncertain

105-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 105-1 transversum patient: 105; biopsy: 1; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 105-1 transversum patient: 105; biopsy: 1; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 105-1 transversum patient: 105; biopsy: 1; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 105-1 transversum patient: 105; biopsy: 1; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 105; biopsy: 1; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621874
sample_title: 105-1
source_name: transversum
characteristics: patient: 105; biopsy: 1; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621875

Uncertain

14-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14-4 descendens patient: 14; biopsy: 4; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 14-4 descendens patient: 14; biopsy: 4; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14-4 descendens patient: 14; biopsy: 4; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 14-4 descendens patient: 14; biopsy: 4; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 14; biopsy: 4; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621875
sample_title: 14-4
source_name: descendens
characteristics: patient: 14; biopsy: 4; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621876

Uncertain

83-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 83-1 sigmoideum patient: 83; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 83-1 sigmoideum patient: 83; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 83-1 sigmoideum patient: 83; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 83-1 sigmoideum patient: 83; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 83; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621876
sample_title: 83-1
source_name: sigmoideum
characteristics: patient: 83; biopsy: 1; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621877

Uncertain

109-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 109-1 descendens patient: 109; biopsy: 1; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 109-1 descendens patient: 109; biopsy: 1; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 109-1 descendens patient: 109; biopsy: 1; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 109-1 descendens patient: 109; biopsy: 1; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 109; biopsy: 1; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621877
sample_title: 109-1
source_name: descendens
characteristics: patient: 109; biopsy: 1; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621878

Uncertain

42-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42-5 sigmoideum patient: 42; biopsy: 5; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 42-5 sigmoideum patient: 42; biopsy: 5; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42-5 sigmoideum patient: 42; biopsy: 5; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 42-5 sigmoideum patient: 42; biopsy: 5; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 42; biopsy: 5; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621878
sample_title: 42-5
source_name: sigmoideum
characteristics: patient: 42; biopsy: 5; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621879

Uncertain

14-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14-3 transversum patient: 14; biopsy: 3; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 14-3 transversum patient: 14; biopsy: 3; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14-3 transversum patient: 14; biopsy: 3; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 14-3 transversum patient: 14; biopsy: 3; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 14; biopsy: 3; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621879
sample_title: 14-3
source_name: transversum
characteristics: patient: 14; biopsy: 3; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621880

Uncertain

83-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 83-2 descendens patient: 83; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 83-2 descendens patient: 83; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 83-2 descendens patient: 83; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 83-2 descendens patient: 83; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 83; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621880
sample_title: 83-2
source_name: descendens
characteristics: patient: 83; biopsy: 2; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621881

Uncertain

111-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 111-3 coecum patient: 111; biopsy: 3; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 111-3 coecum patient: 111; biopsy: 3; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 111-3 coecum patient: 111; biopsy: 3; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 111-3 coecum patient: 111; biopsy: 3; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 111; biopsy: 3; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621881
sample_title: 111-3
source_name: coecum
characteristics: patient: 111; biopsy: 3; age: 30; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621882

Uncertain

35-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-4 transversum patient: 35; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 35-4 transversum patient: 35; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-4 transversum patient: 35; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 35-4 transversum patient: 35; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 35; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621882
sample_title: 35-4
source_name: transversum
characteristics: patient: 35; biopsy: 4; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621883

Uncertain

14-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14-2 ascendens patient: 14; biopsy: 2; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 14-2 ascendens patient: 14; biopsy: 2; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14-2 ascendens patient: 14; biopsy: 2; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 14-2 ascendens patient: 14; biopsy: 2; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 14; biopsy: 2; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621883
sample_title: 14-2
source_name: ascendens
characteristics: patient: 14; biopsy: 2; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621884

Uncertain

85-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 85-1 sigmoideum patient: 85; biopsy: 1; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 85-1 sigmoideum patient: 85; biopsy: 1; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 85-1 sigmoideum patient: 85; biopsy: 1; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 85-1 sigmoideum patient: 85; biopsy: 1; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 85; biopsy: 1; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621884
sample_title: 85-1
source_name: sigmoideum
characteristics: patient: 85; biopsy: 1; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621885

Uncertain

115-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 115-3 rectum patient: 115; biopsy: 3; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 115-3 rectum patient: 115; biopsy: 3; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 115-3 rectum patient: 115; biopsy: 3; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 115-3 rectum patient: 115; biopsy: 3; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 115; biopsy: 3; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621885
sample_title: 115-3
source_name: rectum
characteristics: patient: 115; biopsy: 3; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621886

Uncertain

35-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35-6 sigmoideum patient: 35; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 35-6 sigmoideum patient: 35; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35-6 sigmoideum patient: 35; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 35-6 sigmoideum patient: 35; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 35; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621886
sample_title: 35-6
source_name: sigmoideum
characteristics: patient: 35; biopsy: 6; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621887

Uncertain

14-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14-1 coecum patient: 14; biopsy: 1; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 14-1 coecum patient: 14; biopsy: 1; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14-1 coecum patient: 14; biopsy: 1; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 14-1 coecum patient: 14; biopsy: 1; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 14; biopsy: 1; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621887
sample_title: 14-1
source_name: coecum
characteristics: patient: 14; biopsy: 1; age: 70; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621888

Uncertain

85-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 85-2 rectum patient: 85; biopsy: 2; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 85-2 rectum patient: 85; biopsy: 2; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 85-2 rectum patient: 85; biopsy: 2; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 85-2 rectum patient: 85; biopsy: 2; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 85; biopsy: 2; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621888
sample_title: 85-2
source_name: rectum
characteristics: patient: 85; biopsy: 2; age: 58; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621889

Uncertain

120-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 120-3 descendens patient: 120; biopsy: 3; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 120-3 descendens patient: 120; biopsy: 3; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 120-3 descendens patient: 120; biopsy: 3; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 120-3 descendens patient: 120; biopsy: 3; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 120; biopsy: 3; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621889
sample_title: 120-3
source_name: descendens
characteristics: patient: 120; biopsy: 3; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621890

Uncertain

42-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42-6 rectum patient: 42; biopsy: 6; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 42-6 rectum patient: 42; biopsy: 6; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42-6 rectum patient: 42; biopsy: 6; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 42-6 rectum patient: 42; biopsy: 6; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 42; biopsy: 6; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621890
sample_title: 42-6
source_name: rectum
characteristics: patient: 42; biopsy: 6; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621891

Uncertain

17-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 17-1 descendens patient: 17; biopsy: 1; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 17-1 descendens patient: 17; biopsy: 1; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 17-1 descendens patient: 17; biopsy: 1; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 17-1 descendens patient: 17; biopsy: 1; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 17; biopsy: 1; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621891
sample_title: 17-1
source_name: descendens
characteristics: patient: 17; biopsy: 1; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621892

Uncertain

87-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 87-1 transversum patient: 87; biopsy: 1; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 87-1 transversum patient: 87; biopsy: 1; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 87-1 transversum patient: 87; biopsy: 1; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 87-1 transversum patient: 87; biopsy: 1; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 87; biopsy: 1; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621892
sample_title: 87-1
source_name: transversum
characteristics: patient: 87; biopsy: 1; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621893

Uncertain

121-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-6 sigmoideum patient: 121; biopsy: 6; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 121-6 sigmoideum patient: 121; biopsy: 6; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-6 sigmoideum patient: 121; biopsy: 6; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 121-6 sigmoideum patient: 121; biopsy: 6; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 121; biopsy: 6; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621893
sample_title: 121-6
source_name: sigmoideum
characteristics: patient: 121; biopsy: 6; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621894

Uncertain

40-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40-5 sigmoideum patient: 40; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 40-5 sigmoideum patient: 40; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40-5 sigmoideum patient: 40; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 40-5 sigmoideum patient: 40; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 40; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621894
sample_title: 40-5
source_name: sigmoideum
characteristics: patient: 40; biopsy: 5; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621895

Uncertain

17-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 17-3 sigmoideum patient: 17; biopsy: 3; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 17-3 sigmoideum patient: 17; biopsy: 3; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 17-3 sigmoideum patient: 17; biopsy: 3; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 17-3 sigmoideum patient: 17; biopsy: 3; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 17; biopsy: 3; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621895
sample_title: 17-3
source_name: sigmoideum
characteristics: patient: 17; biopsy: 3; age: 47; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621896

Uncertain

87-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 87-2 descendens patient: 87; biopsy: 2; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 87-2 descendens patient: 87; biopsy: 2; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 87-2 descendens patient: 87; biopsy: 2; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 87-2 descendens patient: 87; biopsy: 2; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 87; biopsy: 2; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621896
sample_title: 87-2
source_name: descendens
characteristics: patient: 87; biopsy: 2; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621897

Uncertain

123-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-4 transversum patient: 123; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 123-4 transversum patient: 123; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-4 transversum patient: 123; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 123-4 transversum patient: 123; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 123; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621897
sample_title: 123-4
source_name: transversum
characteristics: patient: 123; biopsy: 4; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621898

Uncertain

45-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45-2 ascendens patient: 45; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 45-2 ascendens patient: 45; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45-2 ascendens patient: 45; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 45-2 ascendens patient: 45; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 45; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621898
sample_title: 45-2
source_name: ascendens
characteristics: patient: 45; biopsy: 2; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621899

Uncertain

20-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20-6 rectum patient: 20; biopsy: 6; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 20-6 rectum patient: 20; biopsy: 6; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20-6 rectum patient: 20; biopsy: 6; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 20-6 rectum patient: 20; biopsy: 6; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 20; biopsy: 6; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621899
sample_title: 20-6
source_name: rectum
characteristics: patient: 20; biopsy: 6; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621900

Uncertain

87-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 87-3 sigmoideum patient: 87; biopsy: 3; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 87-3 sigmoideum patient: 87; biopsy: 3; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 87-3 sigmoideum patient: 87; biopsy: 3; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 87-3 sigmoideum patient: 87; biopsy: 3; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 87; biopsy: 3; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621900
sample_title: 87-3
source_name: sigmoideum
characteristics: patient: 87; biopsy: 3; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621901

Uncertain

124-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 124-4 rectum patient: 124; biopsy: 4; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 124-4 rectum patient: 124; biopsy: 4; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 124-4 rectum patient: 124; biopsy: 4; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 124-4 rectum patient: 124; biopsy: 4; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 124; biopsy: 4; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621901
sample_title: 124-4
source_name: rectum
characteristics: patient: 124; biopsy: 4; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621902

Uncertain

46-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 46-1 descendens patient: 46; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 46-1 descendens patient: 46; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 46-1 descendens patient: 46; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 46-1 descendens patient: 46; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 46; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621902
sample_title: 46-1
source_name: descendens
characteristics: patient: 46; biopsy: 1; age: 38; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621903

Uncertain

20-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20-5 sigmoideum patient: 20; biopsy: 5; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 20-5 sigmoideum patient: 20; biopsy: 5; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20-5 sigmoideum patient: 20; biopsy: 5; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 20-5 sigmoideum patient: 20; biopsy: 5; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 20; biopsy: 5; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621903
sample_title: 20-5
source_name: sigmoideum
characteristics: patient: 20; biopsy: 5; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621904

Uncertain

87-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 87-4 sigmoideum patient: 87; biopsy: 4; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 87-4 sigmoideum patient: 87; biopsy: 4; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 87-4 sigmoideum patient: 87; biopsy: 4; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 87-4 sigmoideum patient: 87; biopsy: 4; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 87; biopsy: 4; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621904
sample_title: 87-4
source_name: sigmoideum
characteristics: patient: 87; biopsy: 4; age: 64; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621905

Uncertain

127-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 127-4 sigmoideum patient: 127; biopsy: 4; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 127-4 sigmoideum patient: 127; biopsy: 4; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 127-4 sigmoideum patient: 127; biopsy: 4; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 127-4 sigmoideum patient: 127; biopsy: 4; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 127; biopsy: 4; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621905
sample_title: 127-4
source_name: sigmoideum
characteristics: patient: 127; biopsy: 4; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621906

Uncertain

18-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 18-1 coecum patient: 18; biopsy: 1; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 18-1 coecum patient: 18; biopsy: 1; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 18-1 coecum patient: 18; biopsy: 1; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 18-1 coecum patient: 18; biopsy: 1; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 18; biopsy: 1; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621906
sample_title: 18-1
source_name: coecum
characteristics: patient: 18; biopsy: 1; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621907

Uncertain

88-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 88-1 descendens patient: 88; biopsy: 1; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 88-1 descendens patient: 88; biopsy: 1; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 88-1 descendens patient: 88; biopsy: 1; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 88-1 descendens patient: 88; biopsy: 1; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 88; biopsy: 1; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621907
sample_title: 88-1
source_name: descendens
characteristics: patient: 88; biopsy: 1; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621908

Uncertain

20-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20-2 ascendens patient: 20; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 20-2 ascendens patient: 20; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20-2 ascendens patient: 20; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 20-2 ascendens patient: 20; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 20; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621908
sample_title: 20-2
source_name: ascendens
characteristics: patient: 20; biopsy: 2; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621909

Uncertain

92-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 92-6 rectum patient: 92; biopsy: 6; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 92-6 rectum patient: 92; biopsy: 6; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 92-6 rectum patient: 92; biopsy: 6; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 92-6 rectum patient: 92; biopsy: 6; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 92; biopsy: 6; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621909
sample_title: 92-6
source_name: rectum
characteristics: patient: 92; biopsy: 6; age: 28; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621910

Uncertain

18-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 18-2 transversum patient: 18; biopsy: 2; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 18-2 transversum patient: 18; biopsy: 2; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 18-2 transversum patient: 18; biopsy: 2; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
- 18-2 transversum patient: 18; biopsy: 2; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 18; biopsy: 2; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621910
sample_title: 18-2
source_name: transversum
characteristics: patient: 18; biopsy: 2; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: transversum

GSM1621911

Uncertain

88-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 88-2 sigmoideum patient: 88; biopsy: 2; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 88-2 sigmoideum patient: 88; biopsy: 2; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 88-2 sigmoideum patient: 88; biopsy: 2; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 88-2 sigmoideum patient: 88; biopsy: 2; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 88; biopsy: 2; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621911
sample_title: 88-2
source_name: sigmoideum
characteristics: patient: 88; biopsy: 2; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621912

Uncertain

22-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-1 ileum patient: 22; biopsy: 1; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 22-1 ileum patient: 22; biopsy: 1; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-1 ileum patient: 22; biopsy: 1; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 22-1 ileum patient: 22; biopsy: 1; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 22; biopsy: 1; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621912
sample_title: 22-1
source_name: ileum
characteristics: patient: 22; biopsy: 1; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621913

Uncertain

97-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 97-3 sigmoideum patient: 97; biopsy: 3; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 97-3 sigmoideum patient: 97; biopsy: 3; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 97-3 sigmoideum patient: 97; biopsy: 3; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 97-3 sigmoideum patient: 97; biopsy: 3; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 97; biopsy: 3; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621913
sample_title: 97-3
source_name: sigmoideum
characteristics: patient: 97; biopsy: 3; age: 39; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621914

Uncertain

18-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 18-3 sigmoideum patient: 18; biopsy: 3; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 18-3 sigmoideum patient: 18; biopsy: 3; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 18-3 sigmoideum patient: 18; biopsy: 3; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 18-3 sigmoideum patient: 18; biopsy: 3; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 18; biopsy: 3; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621914
sample_title: 18-3
source_name: sigmoideum
characteristics: patient: 18; biopsy: 3; age: 57; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621915

Uncertain

88-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 88-3 sigmoideum patient: 88; biopsy: 3; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 88-3 sigmoideum patient: 88; biopsy: 3; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 88-3 sigmoideum patient: 88; biopsy: 3; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 88-3 sigmoideum patient: 88; biopsy: 3; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 88; biopsy: 3; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621915
sample_title: 88-3
source_name: sigmoideum
characteristics: patient: 88; biopsy: 3; age: 49; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621916

Uncertain

100-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 100-6 sigmoideum patient: 100; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 100-6 sigmoideum patient: 100; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 100-6 sigmoideum patient: 100; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 100-6 sigmoideum patient: 100; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 100; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621916
sample_title: 100-6
source_name: sigmoideum
characteristics: patient: 100; biopsy: 6; age: 50; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621917

Uncertain

27-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 27-2 sigmoideum patient: 27; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 27-2 sigmoideum patient: 27; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 27-2 sigmoideum patient: 27; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 27-2 sigmoideum patient: 27; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 27; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621917
sample_title: 27-2
source_name: sigmoideum
characteristics: patient: 27; biopsy: 2; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621918

Uncertain

19-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 19-4 descendens patient: 19; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 19-4 descendens patient: 19; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 19-4 descendens patient: 19; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 19-4 descendens patient: 19; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 19; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621918
sample_title: 19-4
source_name: descendens
characteristics: patient: 19; biopsy: 4; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621919

Uncertain

89-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 89-1 sigmoideum patient: 89; biopsy: 1; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 89-1 sigmoideum patient: 89; biopsy: 1; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 89-1 sigmoideum patient: 89; biopsy: 1; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 89-1 sigmoideum patient: 89; biopsy: 1; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 89; biopsy: 1; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621919
sample_title: 89-1
source_name: sigmoideum
characteristics: patient: 89; biopsy: 1; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621920

Uncertain

105-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 105-2 sigmoideum patient: 105; biopsy: 2; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 105-2 sigmoideum patient: 105; biopsy: 2; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 105-2 sigmoideum patient: 105; biopsy: 2; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 105-2 sigmoideum patient: 105; biopsy: 2; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 105; biopsy: 2; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621920
sample_title: 105-2
source_name: sigmoideum
characteristics: patient: 105; biopsy: 2; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621921

Uncertain

34-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 34-6 descendens patient: 34; biopsy: 6; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 34-6 descendens patient: 34; biopsy: 6; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 34-6 descendens patient: 34; biopsy: 6; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 34-6 descendens patient: 34; biopsy: 6; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 34; biopsy: 6; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621921
sample_title: 34-6
source_name: descendens
characteristics: patient: 34; biopsy: 6; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621922

Uncertain

19-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 19-3 ascendens patient: 19; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 19-3 ascendens patient: 19; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 19-3 ascendens patient: 19; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 19-3 ascendens patient: 19; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 19; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621922
sample_title: 19-3
source_name: ascendens
characteristics: patient: 19; biopsy: 3; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621923

Uncertain

89-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 89-2 rectum patient: 89; biopsy: 2; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 89-2 rectum patient: 89; biopsy: 2; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 89-2 rectum patient: 89; biopsy: 2; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 89-2 rectum patient: 89; biopsy: 2; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 89; biopsy: 2; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621923
sample_title: 89-2
source_name: rectum
characteristics: patient: 89; biopsy: 2; age: 24; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621924

Uncertain

109-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 109-2 sigmoideum patient: 109; biopsy: 2; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 109-2 sigmoideum patient: 109; biopsy: 2; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 109-2 sigmoideum patient: 109; biopsy: 2; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 109-2 sigmoideum patient: 109; biopsy: 2; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 109; biopsy: 2; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621924
sample_title: 109-2
source_name: sigmoideum
characteristics: patient: 109; biopsy: 2; age: 41; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621925

Uncertain

42-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42-4 descendens patient: 42; biopsy: 4; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 42-4 descendens patient: 42; biopsy: 4; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42-4 descendens patient: 42; biopsy: 4; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 42-4 descendens patient: 42; biopsy: 4; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 42; biopsy: 4; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621925
sample_title: 42-4
source_name: descendens
characteristics: patient: 42; biopsy: 4; age: 22; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621926

Uncertain

19-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 19-2 ileum patient: 19; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 19-2 ileum patient: 19; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 19-2 ileum patient: 19; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
- 19-2 ileum patient: 19; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 19; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621926
sample_title: 19-2
source_name: ileum
characteristics: patient: 19; biopsy: 2; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: ileum

GSM1621927

Uncertain

90-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 90-1 descendens patient: 90; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 90-1 descendens patient: 90; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 90-1 descendens patient: 90; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 90-1 descendens patient: 90; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 90; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621927
sample_title: 90-1
source_name: descendens
characteristics: patient: 90; biopsy: 1; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621928

Uncertain

112-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 112-1 sigmoideum patient: 112; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 112-1 sigmoideum patient: 112; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 112-1 sigmoideum patient: 112; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 112-1 sigmoideum patient: 112; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 112; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621928
sample_title: 112-1
source_name: sigmoideum
characteristics: patient: 112; biopsy: 1; age: 34; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621929

Uncertain

38-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 38-2 ileum patient: 38; biopsy: 2; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 38-2 ileum patient: 38; biopsy: 2; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 38-2 ileum patient: 38; biopsy: 2; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 38-2 ileum patient: 38; biopsy: 2; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 38; biopsy: 2; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621929
sample_title: 38-2
source_name: ileum
characteristics: patient: 38; biopsy: 2; age: 25; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621930

Uncertain

19-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 19-1 coecum patient: 19; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
- 19-1 coecum patient: 19; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 19-1 coecum patient: 19; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
- 19-1 coecum patient: 19; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 19; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621930
sample_title: 19-1
source_name: coecum
characteristics: patient: 19; biopsy: 1; age: 35; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: coecum

GSM1621931

Uncertain

90-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 90-2 sigmoideum patient: 90; biopsy: 2; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 90-2 sigmoideum patient: 90; biopsy: 2; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 90-2 sigmoideum patient: 90; biopsy: 2; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
- 90-2 sigmoideum patient: 90; biopsy: 2; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 90; biopsy: 2; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621931
sample_title: 90-2
source_name: sigmoideum
characteristics: patient: 90; biopsy: 2; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: sigmoideum

GSM1621932

Uncertain

116-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 116-1 sigmoideum patient: 116; biopsy: 1; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 116-1 sigmoideum patient: 116; biopsy: 1; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 116-1 sigmoideum patient: 116; biopsy: 1; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 116-1 sigmoideum patient: 116; biopsy: 1; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 116; biopsy: 1; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621932
sample_title: 116-1
source_name: sigmoideum
characteristics: patient: 116; biopsy: 1; age: 24; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621933

Uncertain

36-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 36-1 rectum patient: 36; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 36-1 rectum patient: 36; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 36-1 rectum patient: 36; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 36-1 rectum patient: 36; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 36; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621933
sample_title: 36-1
source_name: rectum
characteristics: patient: 36; biopsy: 1; age: 45; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621934

Uncertain

20-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20-4 descendens patient: 20; biopsy: 4; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 20-4 descendens patient: 20; biopsy: 4; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20-4 descendens patient: 20; biopsy: 4; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 20-4 descendens patient: 20; biopsy: 4; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 20; biopsy: 4; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621934
sample_title: 20-4
source_name: descendens
characteristics: patient: 20; biopsy: 4; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621935

Uncertain

90-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 90-3 rectum patient: 90; biopsy: 3; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 90-3 rectum patient: 90; biopsy: 3; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 90-3 rectum patient: 90; biopsy: 3; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 90-3 rectum patient: 90; biopsy: 3; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 90; biopsy: 3; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621935
sample_title: 90-3
source_name: rectum
characteristics: patient: 90; biopsy: 3; age: 50; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621936

Uncertain

120-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 120-4 sigmoideum patient: 120; biopsy: 4; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 120-4 sigmoideum patient: 120; biopsy: 4; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 120-4 sigmoideum patient: 120; biopsy: 4; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 120-4 sigmoideum patient: 120; biopsy: 4; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 120; biopsy: 4; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621936
sample_title: 120-4
source_name: sigmoideum
characteristics: patient: 120; biopsy: 4; age: 43; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621937

Uncertain

31-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 31-3 rectum patient: 31; biopsy: 3; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 31-3 rectum patient: 31; biopsy: 3; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 31-3 rectum patient: 31; biopsy: 3; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 31-3 rectum patient: 31; biopsy: 3; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 31; biopsy: 3; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621937
sample_title: 31-3
source_name: rectum
characteristics: patient: 31; biopsy: 3; age: 63; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621938

Uncertain

20-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20-3 transversum patient: 20; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 20-3 transversum patient: 20; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20-3 transversum patient: 20; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 20-3 transversum patient: 20; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 20; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621938
sample_title: 20-3
source_name: transversum
characteristics: patient: 20; biopsy: 3; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: transversum

GSM1621939

Uncertain

91-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 91-1 ileum patient: 91; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 91-1 ileum patient: 91; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 91-1 ileum patient: 91; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
- 91-1 ileum patient: 91; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

Source metadata

Source name: ileum
Characteristics: patient: 91; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621939
sample_title: 91-1
source_name: ileum
characteristics: patient: 91; biopsy: 1; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ileum

GSM1621940

Uncertain

121-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 121-7 rectum patient: 121; biopsy: 7; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 121-7 rectum patient: 121; biopsy: 7; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 121-7 rectum patient: 121; biopsy: 7; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 121-7 rectum patient: 121; biopsy: 7; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 121; biopsy: 7; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621940
sample_title: 121-7
source_name: rectum
characteristics: patient: 121; biopsy: 7; age: 29; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621941

Uncertain

37-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 37-2 rectum patient: 37; biopsy: 2; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 37-2 rectum patient: 37; biopsy: 2; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 37-2 rectum patient: 37; biopsy: 2; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 37-2 rectum patient: 37; biopsy: 2; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 37; biopsy: 2; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621941
sample_title: 37-2
source_name: rectum
characteristics: patient: 37; biopsy: 2; age: 29; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621942

Uncertain

20-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20-1 coecum patient: 20; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 20-1 coecum patient: 20; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20-1 coecum patient: 20; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 20-1 coecum patient: 20; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 20; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621942
sample_title: 20-1
source_name: coecum
characteristics: patient: 20; biopsy: 1; age: 67; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621943

Uncertain

91-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 91-2 coecum patient: 91; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 91-2 coecum patient: 91; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 91-2 coecum patient: 91; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 91-2 coecum patient: 91; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 91; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621943
sample_title: 91-2
source_name: coecum
characteristics: patient: 91; biopsy: 2; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621944

Uncertain

123-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 123-5 descendens patient: 123; biopsy: 5; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 123-5 descendens patient: 123; biopsy: 5; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 123-5 descendens patient: 123; biopsy: 5; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 123-5 descendens patient: 123; biopsy: 5; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 123; biopsy: 5; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621944
sample_title: 123-5
source_name: descendens
characteristics: patient: 123; biopsy: 5; age: 52; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621945

Uncertain

27-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 27-1 sigmoideum patient: 27; biopsy: 1; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 27-1 sigmoideum patient: 27; biopsy: 1; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 27-1 sigmoideum patient: 27; biopsy: 1; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
- 27-1 sigmoideum patient: 27; biopsy: 1; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

Source metadata

Source name: sigmoideum
Characteristics: patient: 27; biopsy: 1; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621945
sample_title: 27-1
source_name: sigmoideum
characteristics: patient: 27; biopsy: 1; age: 51; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: sigmoideum

GSM1621946

Uncertain

22-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-2 coecum patient: 22; biopsy: 2; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 22-2 coecum patient: 22; biopsy: 2; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-2 coecum patient: 22; biopsy: 2; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
- 22-2 coecum patient: 22; biopsy: 2; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

Source metadata

Source name: coecum
Characteristics: patient: 22; biopsy: 2; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621946
sample_title: 22-2
source_name: coecum
characteristics: patient: 22; biopsy: 2; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: coecum

GSM1621947

Uncertain

91-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 91-3 ascendens patient: 91; biopsy: 3; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 91-3 ascendens patient: 91; biopsy: 3; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 91-3 ascendens patient: 91; biopsy: 3; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
- 91-3 ascendens patient: 91; biopsy: 3; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

Source metadata

Source name: ascendens
Characteristics: patient: 91; biopsy: 3; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621947
sample_title: 91-3
source_name: ascendens
characteristics: patient: 91; biopsy: 3; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: ascendens

GSM1621948

Uncertain

125-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 125-1 rectum patient: 125; biopsy: 1; age: 23; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 125-1 rectum patient: 125; biopsy: 1; age: 23; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 125-1 rectum patient: 125; biopsy: 1; age: 23; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 125-1 rectum patient: 125; biopsy: 1; age: 23; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 125; biopsy: 1; age: 23; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621948
sample_title: 125-1
source_name: rectum
characteristics: patient: 125; biopsy: 1; age: 23; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621949

Uncertain

48-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 48-1 descendens patient: 48; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 48-1 descendens patient: 48; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 48-1 descendens patient: 48; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
- 48-1 descendens patient: 48; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 48; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621949
sample_title: 48-1
source_name: descendens
characteristics: patient: 48; biopsy: 1; age: 31; diagnosis: UC; gastroscopy: FALSE; inflammation: yes; tissue: descendens

GSM1621950

Uncertain

22-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22-7 rectum patient: 22; biopsy: 7; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 22-7 rectum patient: 22; biopsy: 7; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22-7 rectum patient: 22; biopsy: 7; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
- 22-7 rectum patient: 22; biopsy: 7; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 22; biopsy: 7; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621950
sample_title: 22-7
source_name: rectum
characteristics: patient: 22; biopsy: 7; age: 19; diagnosis: CD; gastroscopy: FALSE; inflammation: non; tissue: rectum

GSM1621951

Uncertain

91-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 91-4 descendens patient: 91; biopsy: 4; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 91-4 descendens patient: 91; biopsy: 4; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 91-4 descendens patient: 91; biopsy: 4; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
- 91-4 descendens patient: 91; biopsy: 4; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

Source metadata

Source name: descendens
Characteristics: patient: 91; biopsy: 4; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621951
sample_title: 91-4
source_name: descendens
characteristics: patient: 91; biopsy: 4; age: 54; diagnosis: UC; gastroscopy: FALSE; inflammation: non; tissue: descendens

GSM1621952

Uncertain

127-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 127-5 rectum patient: 127; biopsy: 5; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 127-5 rectum patient: 127; biopsy: 5; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 127-5 rectum patient: 127; biopsy: 5; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
- 127-5 rectum patient: 127; biopsy: 5; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

Source metadata

Source name: rectum
Characteristics: patient: 127; biopsy: 5; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621952
sample_title: 127-5
source_name: rectum
characteristics: patient: 127; biopsy: 5; age: 42; diagnosis: CD; gastroscopy: FALSE; inflammation: yes; tissue: rectum

GSM1621953

Uncertain

53-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 53-4 transversum patient: 53; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 53-4 transversum patient: 53; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 53-4 transversum patient: 53; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
- 53-4 transversum patient: 53; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Source metadata

Source name: transversum
Characteristics: patient: 53; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM1621953
sample_title: 53-4
source_name: transversum
characteristics: patient: 53; biopsy: 4; age: 18; diagnosis: Control; gastroscopy: FALSE; inflammation: non; tissue: transversum

Included samples (0)

Uncertain samples (368)