miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of IL17RD.

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

20 case / 16 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 45 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Pekow J, Meckel K, Dougherty U, Huang Y, Chen X, Almoghrabi A, Mustafi R, Buton F, Hart J, Rubin D, Kwon J, Bissonnette M
Contact name: Yong Huang
Submission date: 2015-04-27
Last update: 2017-08-28
Organization: University of Viginia
Department: Medicine
Public date: 2015-04-28
Experiment types: Expression profiling by array; Other
Platforms: GPL20111 NanoString nCounter v1.7.0
Series type: Series
SubSeries: Not available
BioProject: PRJNA282408

Summary

Patients with ulcerative colitis (UC) are at increased risk for colorectal cancer although mechanisms remain poorly understood. We sought to evaluate the role of miRNAs in neoplasia development in this high-risk population

Overall design

RNA was extracted from formalin fixed paraffin embedded tissue from controls (n=12), UC without neoplasia (UC, n=9), UC-associated neoplastic tissue (UCN, n=10; HGD-4, CRC-6) and adjacent tissue (n=9). miRNA array analysis was performed using the Nanostring nCounter System v1

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 45 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication miR-193a-3p is a Key Tumor Suppressor in Ulcerative Colitis-Associated Colon Cancer and Promotes Carcinogenesis through Upregulation of IL17RD. Clinical cancer research : an official journal of the American Association for Cancer Research, 2017 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

9 samples are still unassigned.
Secondary RNA assay context should be analyzed separately from ordinary bulk RNA-seq.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 9 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Colorectal cancer, ulcerative colitis Disease context came from Normalization rules.
Likely case group Ulcerative colitis 20 samples
Likely control group Healthy control 16 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Interpreted disease metadata: Colorectal cancer, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 28600480.
Publication context: miR-193a-3p is a Key Tumor Suppressor in Ulcerative Colitis-Associated Colon Cancer and Promotes Carcinogenesis through Upregulation of IL17RD.. Clinical cancer research : an official journal of the American Association for Cancer Research, 2017. PMID 28600480. DOI 10.1158/1078-0432.CCR-17-0171.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Small RNA, miRNA, circRNA, or extracellular-vesicle RNA context downgraded for primary mRNA tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because secondary RNA assays are not primary mRNA tissue RNA-seq.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.
Microarray expression context was detected; compare separately from RNA-seq cohorts.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

221 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM1667299 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667300 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667301 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667302 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667303 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667304 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667305 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667307 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667308 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667309 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667310 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667311 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667312 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667313 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667314 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667315 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667316 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667317 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667318 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667319 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667320 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667321 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667322 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667323 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667324 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667325 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667326 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667327 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667328 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667329 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667330 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667331 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667332 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667333 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667334 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667335 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667336 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667337 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667338 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667339 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667340 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667341 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667342 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1667343 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: colon sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE68306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE68306 dataset_title: miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of ... keyword match keyword match: microarray

collection_method biopsy GSM1667299 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667300 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667301 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667302 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667303 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667304 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667305 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667306 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667307 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667308 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667309 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667310 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667311 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667312 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667313 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667314 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667315 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667316 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667317 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667318 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667319 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667320 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667321 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667322 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667323 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667324 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667325 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667326 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667327 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667328 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667329 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667330 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667331 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667332 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667333 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667334 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667335 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667336 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667337 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667338 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667339 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667340 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667341 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667342 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1667343 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary collection method match: biopsy

disease colorectal cancer GSE68306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colorectal cancer dataset_accession: GSE68306 dataset_title: miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease ulcerative colitis GSE68306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE68306 dataset_title: miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of ... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667305 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667308 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667309 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667312 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667313 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667314 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667316 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667317 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667318 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667325 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667326 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667327 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667328 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667329 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667330 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667337 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667338 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence UC NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: UC

disease ulcerative colitis GSM1667339 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667340 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1667341 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary disease match: ulcerative colitis

organism Homo sapiens GSE68306 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE68306 dataset_title: miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of ... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM1667299 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667300 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667301 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667302 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667303 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667304 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667305 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667306 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667307 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667308 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667309 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667310 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667311 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667312 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667313 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667314 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667315 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667316 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667317 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667318 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667319 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667320 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667321 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667322 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667323 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667324 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667325 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667326 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667327 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667328 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667329 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667330 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667331 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667332 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667333 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667334 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667335 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667336 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667337 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667338 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667339 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667340 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667341 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667342 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1667343 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type normal tissue GSM1667299 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667303 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667304 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667306 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667307 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667310 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667311 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667321 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667322 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667323 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667324 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667332 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667333 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667334 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667335 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1667336 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary sample type match: normal

tissue colon GSE68306 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE68306 dataset_title: miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667299 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667300 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667301 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667302 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667303 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667304 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667305 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667306 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667307 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667308 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667309 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667310 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667311 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667312 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667313 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667314 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667315 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667316 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667317 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667318 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667319 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667320 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667321 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667322 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667323 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667324 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667325 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667326 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667327 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667328 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667329 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667330 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667331 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667332 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667333 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667334 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667335 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667336 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667337 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667338 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667339 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667340 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667341 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667342 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1667343 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

45 rows shown Show Hide

Study totals: Case 20 | Control 16 | Unassigned 9 | Excluded 0 | Ambiguous 0 45 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Ulcerative colitis	Case	GSM1667305	NS34	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667308	NS7	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667309	NS9	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667312	NS16	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667313	NS17	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667314	NS18	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667316	NS20	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667317	NS21	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667318	NS22	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667325	NS29	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667326	NS30	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667327	NS31	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667328	NS32	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667329	NS33	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667330	NS35	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667337	NS42	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667338	NS43	Colon Diagnosis: UC patients without neoplasia; Group: UC; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667339	NS44	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Ulcerative colitis	Case	GSM1667340	NS45	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Case marker detected.
Ulcerative colitis	Case	GSM1667341	NS46	Colon Diagnosis: Ulcerative colitis associated neoplastic tissues; Group: UCN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Case marker detected.
Healthy control	Control	GSM1667299	NS1	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667303	NS2	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Sample-local control marker detected.
Healthy control	Control	GSM1667304	NS3	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667306	NS4	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667307	NS6	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Sample-local control marker detected.
Healthy control	Control	GSM1667310	NS13	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667311	NS14	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667321	NS25	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667322	NS26	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Sample-local control marker detected.
Healthy control	Control	GSM1667323	NS27	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667324	NS28	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Sample-local control marker detected.
Healthy control	Control	GSM1667332	NS37	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667333	NS38	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667334	NS39	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Healthy control	Control	GSM1667335	NS40	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Right colon	Sample-local control marker detected.
Healthy control	Control	GSM1667336	NS41	Colon Diagnosis: Normal; Group: Normal; Tissue: Colon; Sampling: Biopsy; Location: Left colon	Sample-local control marker detected.
Unassigned	Unassigned	GSM1667300	NS10	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667301	NS11	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667302	NS12	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667315	NS19	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667319	NS23	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667320	NS24	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Right colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667331	NS36	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667342	NS47	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	No explicit case or control marker detected.
Unassigned	Unassigned	GSM1667343	NS48	Colon Diagnosis: Non-dysplastic UC mucosa adjacent to a neoplastic lesion; Group: nUCaN; Tissue: Colon; Sampling: Biopsy; Location: Left colon	No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

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Use as Discovery Cohort