Matching samples

GSE68306 · miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of IL17RD.

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

20 case / 16 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (45)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM1667299

Uncertain

NS1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
        • NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
          • NS1 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
        Source metadata
        Source name
        colon
        Characteristics
        diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM1667299
sample_title: NS1
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

        GSM1667300

        Uncertain

        NS10

        Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

        Requirements and decision evidence
        • Case: organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • Case: assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • Case: specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
              • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
            • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • Case: specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
              • Control: organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • Control: assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • Control: specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                    • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                  • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • Control: specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                      • NS10 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                    Source metadata
                    Source name
                    colon
                    Characteristics
                    diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM1667300
sample_title: NS10
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon

                    GSM1667301

                    Uncertain

                    NS11

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                    Requirements and decision evidence
                    • Case: organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • Case: assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • Case: specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                          • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                        • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • Case: specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                            • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                          • Control: organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • Control: assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                              • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • Control: specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                  • NS11 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                Source metadata
                                Source name
                                colon
                                Characteristics
                                diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM1667301
sample_title: NS11
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon

                                GSM1667302

                                Uncertain

                                NS12

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                Requirements and decision evidence
                                • Case: organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • Case: assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                      • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                    • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • Case: specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                        • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                      • Control: organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • Control: assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                            • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                          • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • Control: specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                              • NS12 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                            Source metadata
                                            Source name
                                            colon
                                            Characteristics
                                            diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM1667302
sample_title: NS12
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon

                                            GSM1667303

                                            Uncertain

                                            NS2

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                  • NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                    • NS2 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                  Source metadata
                                                  Source name
                                                  colon
                                                  Characteristics
                                                  diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM1667303
sample_title: NS2
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon

                                                  GSM1667304

                                                  Uncertain

                                                  NS3

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                        • NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                          • NS3 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                        Source metadata
                                                        Source name
                                                        colon
                                                        Characteristics
                                                        diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM1667304
sample_title: NS3
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                        GSM1667305

                                                        Uncertain

                                                        NS34

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                              • NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                • NS34 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                              Source metadata
                                                              Source name
                                                              colon
                                                              Characteristics
                                                              diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM1667305
sample_title: NS34
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                              GSM1667306

                                                              Uncertain

                                                              NS4

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                    • NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                      • NS4 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                    Source metadata
                                                                    Source name
                                                                    colon
                                                                    Characteristics
                                                                    diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM1667306
sample_title: NS4
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                    GSM1667307

                                                                    Uncertain

                                                                    NS6

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                          • NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                            • NS6 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                          Source metadata
                                                                          Source name
                                                                          colon
                                                                          Characteristics
                                                                          diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM1667307
sample_title: NS6
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon

                                                                          GSM1667308

                                                                          Uncertain

                                                                          NS7

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                • NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                  • NS7 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                Source metadata
                                                                                Source name
                                                                                colon
                                                                                Characteristics
                                                                                diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM1667308
sample_title: NS7
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon

                                                                                GSM1667309

                                                                                Uncertain

                                                                                NS9

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                      • NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                        • NS9 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                      Source metadata
                                                                                      Source name
                                                                                      colon
                                                                                      Characteristics
                                                                                      diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM1667309
sample_title: NS9
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon

                                                                                      GSM1667310

                                                                                      Uncertain

                                                                                      NS13

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                            • NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                              • NS13 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                            Source metadata
                                                                                            Source name
                                                                                            colon
                                                                                            Characteristics
                                                                                            diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM1667310
sample_title: NS13
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                            GSM1667311

                                                                                            Uncertain

                                                                                            NS14

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                  • NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                    • NS14 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  colon
                                                                                                  Characteristics
                                                                                                  diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM1667311
sample_title: NS14
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                  GSM1667312

                                                                                                  Uncertain

                                                                                                  NS16

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                        • NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                          • NS16 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        colon
                                                                                                        Characteristics
                                                                                                        diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM1667312
sample_title: NS16
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                        GSM1667313

                                                                                                        Uncertain

                                                                                                        NS17

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                              • NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                • NS17 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              colon
                                                                                                              Characteristics
                                                                                                              diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM1667313
sample_title: NS17
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                              GSM1667314

                                                                                                              Uncertain

                                                                                                              NS18

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                    • NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                      • NS18 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    colon
                                                                                                                    Characteristics
                                                                                                                    diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM1667314
sample_title: NS18
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                    GSM1667315

                                                                                                                    Uncertain

                                                                                                                    NS19

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                          • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                        • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                            • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                          • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                              • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                  • NS19 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                colon
                                                                                                                                Characteristics
                                                                                                                                diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM1667315
sample_title: NS19
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                GSM1667316

                                                                                                                                Uncertain

                                                                                                                                NS20

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                      • NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                        • NS20 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      colon
                                                                                                                                      Characteristics
                                                                                                                                      diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM1667316
sample_title: NS20
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                      GSM1667317

                                                                                                                                      Uncertain

                                                                                                                                      NS21

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                            • NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                              • NS21 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            colon
                                                                                                                                            Characteristics
                                                                                                                                            diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM1667317
sample_title: NS21
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                            GSM1667318

                                                                                                                                            Uncertain

                                                                                                                                            NS22

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                  • NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                    • NS22 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  colon
                                                                                                                                                  Characteristics
                                                                                                                                                  diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM1667318
sample_title: NS22
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                  GSM1667319

                                                                                                                                                  Uncertain

                                                                                                                                                  NS23

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                        • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                      • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                          • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                        • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                              • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                            • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                • NS23 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              colon
                                                                                                                                                              Characteristics
                                                                                                                                                              diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM1667319
sample_title: NS23
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                              GSM1667320

                                                                                                                                                              Uncertain

                                                                                                                                                              NS24

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                    • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                      • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                    • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                          • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                            • NS24 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          colon
                                                                                                                                                                          Characteristics
                                                                                                                                                                          diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM1667320
sample_title: NS24
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                          GSM1667321

                                                                                                                                                                          Uncertain

                                                                                                                                                                          NS25

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                • NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                  • NS25 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                colon
                                                                                                                                                                                Characteristics
                                                                                                                                                                                diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM1667321
sample_title: NS25
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                GSM1667322

                                                                                                                                                                                Uncertain

                                                                                                                                                                                NS26

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                      • NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                        • NS26 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      colon
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM1667322
sample_title: NS26
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                      GSM1667323

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      NS27

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                            • NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                              • NS27 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            colon
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM1667323
sample_title: NS27
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                            GSM1667324

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            NS28

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                  • NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                    • NS28 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  colon
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM1667324
sample_title: NS28
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                                  GSM1667325

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  NS29

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                        • NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                          • NS29 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        colon
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM1667325
sample_title: NS29
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                                        GSM1667326

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        NS30

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                              • NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                • NS30 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              colon
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM1667326
sample_title: NS30
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                              GSM1667327

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              NS31

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                    • NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                      • NS31 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    colon
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM1667327
sample_title: NS31
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                                                    GSM1667328

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    NS32

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                          • NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                            • NS32 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          colon
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM1667328
sample_title: NS32
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                          GSM1667329

                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                          NS33

                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                • NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                  • NS33 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                colon
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM1667329
sample_title: NS33
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                GSM1667330

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                NS35

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                      • NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                        • NS35 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      colon
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM1667330
sample_title: NS35
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                      GSM1667331

                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                      NS36

                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                            • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                          • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                              • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                            • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                  • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                    • NS36 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  colon
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM1667331
sample_title: NS36
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                  GSM1667332

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  NS37

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                        • NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                          • NS37 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        colon
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM1667332
sample_title: NS37
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                        GSM1667333

                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                        NS38

                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                              • NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                • NS38 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              colon
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM1667333
sample_title: NS38
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                              GSM1667334

                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                              NS39

                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                    • NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                      • NS39 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    colon
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM1667334
sample_title: NS39
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                    GSM1667335

                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                    NS40

                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                          • NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                            • NS40 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          colon
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM1667335
sample_title: NS40
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                                                                                                          GSM1667336

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          NS41

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                • NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                  • NS41 colon diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                colon
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM1667336
sample_title: NS41
source_name: colon
characteristics: diagnosis: Normal; group: Normal; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                                GSM1667337

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                NS42

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                      • NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                        • NS42 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      colon
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM1667337
sample_title: NS42
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                                      GSM1667338

                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                      NS43

                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                            • NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                              • NS43 colon diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            colon
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM1667338
sample_title: NS43
source_name: colon
characteristics: diagnosis: UC patients without neoplasia; group: UC; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                                                                                                                            GSM1667339

                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                            NS44

                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                  • NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                    • NS44 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  colon
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM1667339
sample_title: NS44
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                                                  GSM1667340

                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                  NS45

                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                                        • NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                                          • NS45 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        colon
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM1667340
sample_title: NS45
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: right colon

                                                                                                                                                                                                                                                                                                        GSM1667341

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        NS46

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                              • NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                • NS46 colon diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              colon
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              diagnosis: ulcerative colitis associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM1667341
sample_title: NS46
source_name: colon
characteristics: diagnosis: ulcerative colitis  associated neoplastic tissues; group: UCN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                                                              GSM1667342

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              NS47

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                    • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                      • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                    • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                          • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                            • NS47 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          colon
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM1667342
sample_title: NS47
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                                                                          GSM1667343

                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                          NS48

                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                  • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                      • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                        • NS48 colon diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      colon
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM1667343
sample_title: NS48
source_name: colon
characteristics: diagnosis: non-dysplastic UC mucosa adjacent to a neoplastic lesion; group: nUCaN; tissue: colon; sampling: Biopsy; location: left colon

                                                                                                                                                                                                                                                                                                                                      Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                      No excluded samples.