Matching samples

GSE71730 · Plasma induced signatures reveal an extracellular milieu possessing an immunoregulatory bias in treatment naïve inflammatory bowel disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (47)

GSM1844252

Excluded

UPN727 cells, unrelated healthy control (uHC) plasma patients 01

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Does not meet requirement
        • The reported value differs from the selected requirement.
        • UPN727 cells, unrelated healthy control (uHC) plasma patients 01 UPN727 cells stimulated with HC01 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
        • Supported by the indexed evidence.
        • The reported value differs from the selected requirement.
        • UPN727 cells, unrelated healthy control (uHC) plasma patients 01 UPN727 cells stimulated with HC01 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
      • specimen category excludes: Biofluid — Does not meet requirement
        • The reported value differs from the selected requirement.
        • UPN727 cells, unrelated healthy control (uHC) plasma patients 01 UPN727 cells stimulated with HC01 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
      Source metadata
      Source name
      UPN727 cells stimulated with HC01 Plasma
      Characteristics
      responder cell line: UPN727; diagnosis of plasma donor: healthy
      Description
      Not reported
      Indexed organism evidence
      INFERRED · PARENT_INHERITED: Not reported
      Indexed assay evidence
      INFERRED · PARENT_INHERITED: Not reported
      Source
      GEO
      Original indexed metadata
      sample_accession: GSM1844252
      sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 01
      source_name: UPN727 cells stimulated with HC01 Plasma
      characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

      GSM1844253

      Excluded

      UPN727 cells, unrelated healthy control (uHC) plasma patients 02

      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

      Requirements and decision evidence
      • organism: Homo sapiens — Insufficient evidence
        • The required value is not reported.
        • assay type: bulk RNA-seq — Insufficient evidence
          • The required value is not reported.
          • specimen category: Tissue or biopsy — Does not meet requirement
            • The reported value differs from the selected requirement.
            • UPN727 cells, unrelated healthy control (uHC) plasma patients 02 UPN727 cells stimulated with HC02 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
            • Supported by the indexed evidence.
            • The reported value differs from the selected requirement.
            • UPN727 cells, unrelated healthy control (uHC) plasma patients 02 UPN727 cells stimulated with HC02 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
          • specimen category excludes: Biofluid — Does not meet requirement
            • The reported value differs from the selected requirement.
            • UPN727 cells, unrelated healthy control (uHC) plasma patients 02 UPN727 cells stimulated with HC02 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
          Source metadata
          Source name
          UPN727 cells stimulated with HC02 Plasma
          Characteristics
          responder cell line: UPN727; diagnosis of plasma donor: healthy
          Description
          Not reported
          Indexed organism evidence
          INFERRED · PARENT_INHERITED: Not reported
          Indexed assay evidence
          INFERRED · PARENT_INHERITED: Not reported
          Source
          GEO
          Original indexed metadata
          sample_accession: GSM1844253
          sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 02
          source_name: UPN727 cells stimulated with HC02 Plasma
          characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

          GSM1844254

          Excluded

          UPN727 cells, unrelated healthy control (uHC) plasma patients 03

          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

          Requirements and decision evidence
          • organism: Homo sapiens — Insufficient evidence
            • The required value is not reported.
            • assay type: bulk RNA-seq — Insufficient evidence
              • The required value is not reported.
              • specimen category: Tissue or biopsy — Does not meet requirement
                • The reported value differs from the selected requirement.
                • UPN727 cells, unrelated healthy control (uHC) plasma patients 03 UPN727 cells stimulated with HC03 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                • Supported by the indexed evidence.
                • The reported value differs from the selected requirement.
                • UPN727 cells, unrelated healthy control (uHC) plasma patients 03 UPN727 cells stimulated with HC03 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
              • specimen category excludes: Biofluid — Does not meet requirement
                • The reported value differs from the selected requirement.
                • UPN727 cells, unrelated healthy control (uHC) plasma patients 03 UPN727 cells stimulated with HC03 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
              Source metadata
              Source name
              UPN727 cells stimulated with HC03 Plasma
              Characteristics
              responder cell line: UPN727; diagnosis of plasma donor: healthy
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM1844254
              sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 03
              source_name: UPN727 cells stimulated with HC03 Plasma
              characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

              GSM1844255

              Excluded

              UPN727 cells, unrelated healthy control (uHC) plasma patients 04

              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • UPN727 cells, unrelated healthy control (uHC) plasma patients 04 UPN727 cells stimulated with HC04 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                    • Supported by the indexed evidence.
                    • The reported value differs from the selected requirement.
                    • UPN727 cells, unrelated healthy control (uHC) plasma patients 04 UPN727 cells stimulated with HC04 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                  • specimen category excludes: Biofluid — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • UPN727 cells, unrelated healthy control (uHC) plasma patients 04 UPN727 cells stimulated with HC04 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                  Source metadata
                  Source name
                  UPN727 cells stimulated with HC04 Plasma
                  Characteristics
                  responder cell line: UPN727; diagnosis of plasma donor: healthy
                  Description
                  Not reported
                  Indexed organism evidence
                  INFERRED · PARENT_INHERITED: Not reported
                  Indexed assay evidence
                  INFERRED · PARENT_INHERITED: Not reported
                  Source
                  GEO
                  Original indexed metadata
                  sample_accession: GSM1844255
                  sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 04
                  source_name: UPN727 cells stimulated with HC04 Plasma
                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                  GSM1844256

                  Excluded

                  UPN727 cells, unrelated healthy control (uHC) plasma patients 05

                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                  Requirements and decision evidence
                  • organism: Homo sapiens — Insufficient evidence
                    • The required value is not reported.
                    • assay type: bulk RNA-seq — Insufficient evidence
                      • The required value is not reported.
                      • specimen category: Tissue or biopsy — Does not meet requirement
                        • The reported value differs from the selected requirement.
                        • UPN727 cells, unrelated healthy control (uHC) plasma patients 05 UPN727 cells stimulated with HC05 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                        • Supported by the indexed evidence.
                        • The reported value differs from the selected requirement.
                        • UPN727 cells, unrelated healthy control (uHC) plasma patients 05 UPN727 cells stimulated with HC05 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                      • specimen category excludes: Biofluid — Does not meet requirement
                        • The reported value differs from the selected requirement.
                        • UPN727 cells, unrelated healthy control (uHC) plasma patients 05 UPN727 cells stimulated with HC05 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                      Source metadata
                      Source name
                      UPN727 cells stimulated with HC05 Plasma
                      Characteristics
                      responder cell line: UPN727; diagnosis of plasma donor: healthy
                      Description
                      Not reported
                      Indexed organism evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Indexed assay evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Source
                      GEO
                      Original indexed metadata
                      sample_accession: GSM1844256
                      sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 05
                      source_name: UPN727 cells stimulated with HC05 Plasma
                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                      GSM1844257

                      Excluded

                      UPN727 cells, unrelated healthy control (uHC) plasma patients 06

                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                      Requirements and decision evidence
                      • organism: Homo sapiens — Insufficient evidence
                        • The required value is not reported.
                        • assay type: bulk RNA-seq — Insufficient evidence
                          • The required value is not reported.
                          • specimen category: Tissue or biopsy — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • UPN727 cells, unrelated healthy control (uHC) plasma patients 06 UPN727 cells stimulated with HC06 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                            • Supported by the indexed evidence.
                            • The reported value differs from the selected requirement.
                            • UPN727 cells, unrelated healthy control (uHC) plasma patients 06 UPN727 cells stimulated with HC06 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                          • specimen category excludes: Biofluid — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • UPN727 cells, unrelated healthy control (uHC) plasma patients 06 UPN727 cells stimulated with HC06 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                          Source metadata
                          Source name
                          UPN727 cells stimulated with HC06 Plasma
                          Characteristics
                          responder cell line: UPN727; diagnosis of plasma donor: healthy
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM1844257
                          sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 06
                          source_name: UPN727 cells stimulated with HC06 Plasma
                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                          GSM1844258

                          Excluded

                          UPN727 cells, unrelated healthy control (uHC) plasma patients 07

                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • UPN727 cells, unrelated healthy control (uHC) plasma patients 07 UPN727 cells stimulated with HC07 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                • Supported by the indexed evidence.
                                • The reported value differs from the selected requirement.
                                • UPN727 cells, unrelated healthy control (uHC) plasma patients 07 UPN727 cells stimulated with HC07 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                              • specimen category excludes: Biofluid — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • UPN727 cells, unrelated healthy control (uHC) plasma patients 07 UPN727 cells stimulated with HC07 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                              Source metadata
                              Source name
                              UPN727 cells stimulated with HC07 Plasma
                              Characteristics
                              responder cell line: UPN727; diagnosis of plasma donor: healthy
                              Description
                              Not reported
                              Indexed organism evidence
                              INFERRED · PARENT_INHERITED: Not reported
                              Indexed assay evidence
                              INFERRED · PARENT_INHERITED: Not reported
                              Source
                              GEO
                              Original indexed metadata
                              sample_accession: GSM1844258
                              sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 07
                              source_name: UPN727 cells stimulated with HC07 Plasma
                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                              GSM1844259

                              Excluded

                              UPN727 cells, unrelated healthy control (uHC) plasma patients 08

                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                              Requirements and decision evidence
                              • organism: Homo sapiens — Insufficient evidence
                                • The required value is not reported.
                                • assay type: bulk RNA-seq — Insufficient evidence
                                  • The required value is not reported.
                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                    • The reported value differs from the selected requirement.
                                    • UPN727 cells, unrelated healthy control (uHC) plasma patients 08 UPN727 cells stimulated with HC08 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                    • Supported by the indexed evidence.
                                    • The reported value differs from the selected requirement.
                                    • UPN727 cells, unrelated healthy control (uHC) plasma patients 08 UPN727 cells stimulated with HC08 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                  • specimen category excludes: Biofluid — Does not meet requirement
                                    • The reported value differs from the selected requirement.
                                    • UPN727 cells, unrelated healthy control (uHC) plasma patients 08 UPN727 cells stimulated with HC08 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                  Source metadata
                                  Source name
                                  UPN727 cells stimulated with HC08 Plasma
                                  Characteristics
                                  responder cell line: UPN727; diagnosis of plasma donor: healthy
                                  Description
                                  Not reported
                                  Indexed organism evidence
                                  INFERRED · PARENT_INHERITED: Not reported
                                  Indexed assay evidence
                                  INFERRED · PARENT_INHERITED: Not reported
                                  Source
                                  GEO
                                  Original indexed metadata
                                  sample_accession: GSM1844259
                                  sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 08
                                  source_name: UPN727 cells stimulated with HC08 Plasma
                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                                  GSM1844260

                                  Excluded

                                  UPN727 cells, unrelated healthy control (uHC) plasma patients 09

                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                  Requirements and decision evidence
                                  • organism: Homo sapiens — Insufficient evidence
                                    • The required value is not reported.
                                    • assay type: bulk RNA-seq — Insufficient evidence
                                      • The required value is not reported.
                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • UPN727 cells, unrelated healthy control (uHC) plasma patients 09 UPN727 cells stimulated with HC09 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                        • Supported by the indexed evidence.
                                        • The reported value differs from the selected requirement.
                                        • UPN727 cells, unrelated healthy control (uHC) plasma patients 09 UPN727 cells stimulated with HC09 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                      • specimen category excludes: Biofluid — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • UPN727 cells, unrelated healthy control (uHC) plasma patients 09 UPN727 cells stimulated with HC09 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                      Source metadata
                                      Source name
                                      UPN727 cells stimulated with HC09 Plasma
                                      Characteristics
                                      responder cell line: UPN727; diagnosis of plasma donor: healthy
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM1844260
                                      sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 09
                                      source_name: UPN727 cells stimulated with HC09 Plasma
                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                                      GSM1844261

                                      Excluded

                                      UPN727 cells, unrelated healthy control (uHC) plasma patients 10

                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • UPN727 cells, unrelated healthy control (uHC) plasma patients 10 UPN727 cells stimulated with HC10 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                            • Supported by the indexed evidence.
                                            • The reported value differs from the selected requirement.
                                            • UPN727 cells, unrelated healthy control (uHC) plasma patients 10 UPN727 cells stimulated with HC10 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                          • specimen category excludes: Biofluid — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • UPN727 cells, unrelated healthy control (uHC) plasma patients 10 UPN727 cells stimulated with HC10 Plasma responder cell line: UPN727; diagnosis of plasma donor: healthy
                                          Source metadata
                                          Source name
                                          UPN727 cells stimulated with HC10 Plasma
                                          Characteristics
                                          responder cell line: UPN727; diagnosis of plasma donor: healthy
                                          Description
                                          Not reported
                                          Indexed organism evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Indexed assay evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Source
                                          GEO
                                          Original indexed metadata
                                          sample_accession: GSM1844261
                                          sample_title: UPN727 cells, unrelated healthy control (uHC) plasma patients 10
                                          source_name: UPN727 cells stimulated with HC10 Plasma
                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: healthy

                                          GSM1844262

                                          Excluded

                                          UPN727 cells, Crohn’s disease (CD) plasma patients 01

                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                          Requirements and decision evidence
                                          • organism: Homo sapiens — Insufficient evidence
                                            • The required value is not reported.
                                            • assay type: bulk RNA-seq — Insufficient evidence
                                              • The required value is not reported.
                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                • The reported value differs from the selected requirement.
                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 01 UPN727 cells stimulated with CD01 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                • Supported by the indexed evidence.
                                                • The reported value differs from the selected requirement.
                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 01 UPN727 cells stimulated with CD01 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                • The reported value differs from the selected requirement.
                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 01 UPN727 cells stimulated with CD01 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                              Source metadata
                                              Source name
                                              UPN727 cells stimulated with CD01 Plasma
                                              Characteristics
                                              responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                              Description
                                              Not reported
                                              Indexed organism evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Indexed assay evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Source
                                              GEO
                                              Original indexed metadata
                                              sample_accession: GSM1844262
                                              sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 01
                                              source_name: UPN727 cells stimulated with CD01 Plasma
                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                              GSM1844263

                                              Excluded

                                              UPN727 cells, Crohn’s disease (CD) plasma patients 02

                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                              Requirements and decision evidence
                                              • organism: Homo sapiens — Insufficient evidence
                                                • The required value is not reported.
                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                  • The required value is not reported.
                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                    • The reported value differs from the selected requirement.
                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 02 UPN727 cells stimulated with CD02 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                    • Supported by the indexed evidence.
                                                    • The reported value differs from the selected requirement.
                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 02 UPN727 cells stimulated with CD02 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                    • The reported value differs from the selected requirement.
                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 02 UPN727 cells stimulated with CD02 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                  Source metadata
                                                  Source name
                                                  UPN727 cells stimulated with CD02 Plasma
                                                  Characteristics
                                                  responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM1844263
                                                  sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 02
                                                  source_name: UPN727 cells stimulated with CD02 Plasma
                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                  GSM1844264

                                                  Excluded

                                                  UPN727 cells, Crohn’s disease (CD) plasma patients 03

                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                        • The reported value differs from the selected requirement.
                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 03 UPN727 cells stimulated with CD03 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                        • Supported by the indexed evidence.
                                                        • The reported value differs from the selected requirement.
                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 03 UPN727 cells stimulated with CD03 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                        • The reported value differs from the selected requirement.
                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 03 UPN727 cells stimulated with CD03 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                      Source metadata
                                                      Source name
                                                      UPN727 cells stimulated with CD03 Plasma
                                                      Characteristics
                                                      responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                      Description
                                                      Not reported
                                                      Indexed organism evidence
                                                      INFERRED · PARENT_INHERITED: Not reported
                                                      Indexed assay evidence
                                                      INFERRED · PARENT_INHERITED: Not reported
                                                      Source
                                                      GEO
                                                      Original indexed metadata
                                                      sample_accession: GSM1844264
                                                      sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 03
                                                      source_name: UPN727 cells stimulated with CD03 Plasma
                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                      GSM1844265

                                                      Excluded

                                                      UPN727 cells, Crohn’s disease (CD) plasma patients 04

                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                      Requirements and decision evidence
                                                      • organism: Homo sapiens — Insufficient evidence
                                                        • The required value is not reported.
                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                          • The required value is not reported.
                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                            • The reported value differs from the selected requirement.
                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 04 UPN727 cells stimulated with CD04 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                            • Supported by the indexed evidence.
                                                            • The reported value differs from the selected requirement.
                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 04 UPN727 cells stimulated with CD04 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                            • The reported value differs from the selected requirement.
                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 04 UPN727 cells stimulated with CD04 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                          Source metadata
                                                          Source name
                                                          UPN727 cells stimulated with CD04 Plasma
                                                          Characteristics
                                                          responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                          Description
                                                          Not reported
                                                          Indexed organism evidence
                                                          INFERRED · PARENT_INHERITED: Not reported
                                                          Indexed assay evidence
                                                          INFERRED · PARENT_INHERITED: Not reported
                                                          Source
                                                          GEO
                                                          Original indexed metadata
                                                          sample_accession: GSM1844265
                                                          sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 04
                                                          source_name: UPN727 cells stimulated with CD04 Plasma
                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                          GSM1844266

                                                          Excluded

                                                          UPN727 cells, Crohn’s disease (CD) plasma patients 05

                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                          Requirements and decision evidence
                                                          • organism: Homo sapiens — Insufficient evidence
                                                            • The required value is not reported.
                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                              • The required value is not reported.
                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                • The reported value differs from the selected requirement.
                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 05 UPN727 cells stimulated with CD05 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                • Supported by the indexed evidence.
                                                                • The reported value differs from the selected requirement.
                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 05 UPN727 cells stimulated with CD05 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                • The reported value differs from the selected requirement.
                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 05 UPN727 cells stimulated with CD05 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                              Source metadata
                                                              Source name
                                                              UPN727 cells stimulated with CD05 Plasma
                                                              Characteristics
                                                              responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM1844266
                                                              sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 05
                                                              source_name: UPN727 cells stimulated with CD05 Plasma
                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                              GSM1844267

                                                              Excluded

                                                              UPN727 cells, Crohn’s disease (CD) plasma patients 06

                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 06 UPN727 cells stimulated with CD06 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                    • Supported by the indexed evidence.
                                                                    • The reported value differs from the selected requirement.
                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 06 UPN727 cells stimulated with CD06 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 06 UPN727 cells stimulated with CD06 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                  Source metadata
                                                                  Source name
                                                                  UPN727 cells stimulated with CD06 Plasma
                                                                  Characteristics
                                                                  responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                  Description
                                                                  Not reported
                                                                  Indexed organism evidence
                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                  Indexed assay evidence
                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                  Source
                                                                  GEO
                                                                  Original indexed metadata
                                                                  sample_accession: GSM1844267
                                                                  sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 06
                                                                  source_name: UPN727 cells stimulated with CD06 Plasma
                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                  GSM1844268

                                                                  Excluded

                                                                  UPN727 cells, Crohn’s disease (CD) plasma patients 07

                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                  Requirements and decision evidence
                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                        • The reported value differs from the selected requirement.
                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 07 UPN727 cells stimulated with CD07 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                        • Supported by the indexed evidence.
                                                                        • The reported value differs from the selected requirement.
                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 07 UPN727 cells stimulated with CD07 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                        • The reported value differs from the selected requirement.
                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 07 UPN727 cells stimulated with CD07 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                      Source metadata
                                                                      Source name
                                                                      UPN727 cells stimulated with CD07 Plasma
                                                                      Characteristics
                                                                      responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                      Description
                                                                      Not reported
                                                                      Indexed organism evidence
                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                      Indexed assay evidence
                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                      Source
                                                                      GEO
                                                                      Original indexed metadata
                                                                      sample_accession: GSM1844268
                                                                      sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 07
                                                                      source_name: UPN727 cells stimulated with CD07 Plasma
                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                      GSM1844269

                                                                      Excluded

                                                                      UPN727 cells, Crohn’s disease (CD) plasma patients 08

                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                      Requirements and decision evidence
                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 08 UPN727 cells stimulated with CD08 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                            • Supported by the indexed evidence.
                                                                            • The reported value differs from the selected requirement.
                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 08 UPN727 cells stimulated with CD08 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 08 UPN727 cells stimulated with CD08 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                          Source metadata
                                                                          Source name
                                                                          UPN727 cells stimulated with CD08 Plasma
                                                                          Characteristics
                                                                          responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM1844269
                                                                          sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 08
                                                                          source_name: UPN727 cells stimulated with CD08 Plasma
                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                          GSM1844270

                                                                          Excluded

                                                                          UPN727 cells, Crohn’s disease (CD) plasma patients 09

                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 09 UPN727 cells stimulated with CD09 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                • Supported by the indexed evidence.
                                                                                • The reported value differs from the selected requirement.
                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 09 UPN727 cells stimulated with CD09 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 09 UPN727 cells stimulated with CD09 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                              Source metadata
                                                                              Source name
                                                                              UPN727 cells stimulated with CD09 Plasma
                                                                              Characteristics
                                                                              responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                              Description
                                                                              Not reported
                                                                              Indexed organism evidence
                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                              Indexed assay evidence
                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                              Source
                                                                              GEO
                                                                              Original indexed metadata
                                                                              sample_accession: GSM1844270
                                                                              sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 09
                                                                              source_name: UPN727 cells stimulated with CD09 Plasma
                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                              GSM1844271

                                                                              Excluded

                                                                              UPN727 cells, Crohn’s disease (CD) plasma patients 10

                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                              Requirements and decision evidence
                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                    • The reported value differs from the selected requirement.
                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 10 UPN727 cells stimulated with CD10 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                    • Supported by the indexed evidence.
                                                                                    • The reported value differs from the selected requirement.
                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 10 UPN727 cells stimulated with CD10 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                    • The reported value differs from the selected requirement.
                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 10 UPN727 cells stimulated with CD10 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                  Source metadata
                                                                                  Source name
                                                                                  UPN727 cells stimulated with CD10 Plasma
                                                                                  Characteristics
                                                                                  responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                  Description
                                                                                  Not reported
                                                                                  Indexed organism evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Indexed assay evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Source
                                                                                  GEO
                                                                                  Original indexed metadata
                                                                                  sample_accession: GSM1844271
                                                                                  sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 10
                                                                                  source_name: UPN727 cells stimulated with CD10 Plasma
                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                  GSM1844272

                                                                                  Excluded

                                                                                  UPN727 cells, Crohn’s disease (CD) plasma patients 11

                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                  Requirements and decision evidence
                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 11 UPN727 cells stimulated with CD11 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                        • Supported by the indexed evidence.
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 11 UPN727 cells stimulated with CD11 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 11 UPN727 cells stimulated with CD11 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                      Source metadata
                                                                                      Source name
                                                                                      UPN727 cells stimulated with CD11 Plasma
                                                                                      Characteristics
                                                                                      responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM1844272
                                                                                      sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 11
                                                                                      source_name: UPN727 cells stimulated with CD11 Plasma
                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                      GSM1844273

                                                                                      Excluded

                                                                                      UPN727 cells, Crohn’s disease (CD) plasma patients 12

                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 12 UPN727 cells stimulated with CD12 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 12 UPN727 cells stimulated with CD12 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 12 UPN727 cells stimulated with CD12 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                          Source metadata
                                                                                          Source name
                                                                                          UPN727 cells stimulated with CD12 Plasma
                                                                                          Characteristics
                                                                                          responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                          Description
                                                                                          Not reported
                                                                                          Indexed organism evidence
                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                          Indexed assay evidence
                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                          Source
                                                                                          GEO
                                                                                          Original indexed metadata
                                                                                          sample_accession: GSM1844273
                                                                                          sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 12
                                                                                          source_name: UPN727 cells stimulated with CD12 Plasma
                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                          GSM1844274

                                                                                          Excluded

                                                                                          UPN727 cells, Crohn’s disease (CD) plasma patients 13

                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                          Requirements and decision evidence
                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                • The reported value differs from the selected requirement.
                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 13 UPN727 cells stimulated with CD13 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                • Supported by the indexed evidence.
                                                                                                • The reported value differs from the selected requirement.
                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 13 UPN727 cells stimulated with CD13 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                • The reported value differs from the selected requirement.
                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 13 UPN727 cells stimulated with CD13 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                              Source metadata
                                                                                              Source name
                                                                                              UPN727 cells stimulated with CD13 Plasma
                                                                                              Characteristics
                                                                                              responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                              Description
                                                                                              Not reported
                                                                                              Indexed organism evidence
                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                              Indexed assay evidence
                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                              Source
                                                                                              GEO
                                                                                              Original indexed metadata
                                                                                              sample_accession: GSM1844274
                                                                                              sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 13
                                                                                              source_name: UPN727 cells stimulated with CD13 Plasma
                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                              GSM1844275

                                                                                              Excluded

                                                                                              UPN727 cells, Crohn’s disease (CD) plasma patients 14

                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                              Requirements and decision evidence
                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 14 UPN727 cells stimulated with CD14 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                    • Supported by the indexed evidence.
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 14 UPN727 cells stimulated with CD14 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 14 UPN727 cells stimulated with CD14 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  UPN727 cells stimulated with CD14 Plasma
                                                                                                  Characteristics
                                                                                                  responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM1844275
                                                                                                  sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 14
                                                                                                  source_name: UPN727 cells stimulated with CD14 Plasma
                                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                  GSM1844276

                                                                                                  Excluded

                                                                                                  UPN727 cells, Crohn’s disease (CD) plasma patients 15

                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 15 UPN727 cells stimulated with CD15 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 15 UPN727 cells stimulated with CD15 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 15 UPN727 cells stimulated with CD15 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                      Source metadata
                                                                                                      Source name
                                                                                                      UPN727 cells stimulated with CD15 Plasma
                                                                                                      Characteristics
                                                                                                      responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                      Description
                                                                                                      Not reported
                                                                                                      Indexed organism evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Indexed assay evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Source
                                                                                                      GEO
                                                                                                      Original indexed metadata
                                                                                                      sample_accession: GSM1844276
                                                                                                      sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 15
                                                                                                      source_name: UPN727 cells stimulated with CD15 Plasma
                                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                      GSM1844277

                                                                                                      Excluded

                                                                                                      UPN727 cells, Crohn’s disease (CD) plasma patients 16

                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                      Requirements and decision evidence
                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                            • The reported value differs from the selected requirement.
                                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 16 UPN727 cells stimulated with CD16 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                            • Supported by the indexed evidence.
                                                                                                            • The reported value differs from the selected requirement.
                                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 16 UPN727 cells stimulated with CD16 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                            • The reported value differs from the selected requirement.
                                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 16 UPN727 cells stimulated with CD16 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                          Source metadata
                                                                                                          Source name
                                                                                                          UPN727 cells stimulated with CD16 Plasma
                                                                                                          Characteristics
                                                                                                          responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                          Description
                                                                                                          Not reported
                                                                                                          Indexed organism evidence
                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                          Indexed assay evidence
                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                          Source
                                                                                                          GEO
                                                                                                          Original indexed metadata
                                                                                                          sample_accession: GSM1844277
                                                                                                          sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 16
                                                                                                          source_name: UPN727 cells stimulated with CD16 Plasma
                                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                          GSM1844278

                                                                                                          Excluded

                                                                                                          UPN727 cells, Crohn’s disease (CD) plasma patients 17

                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                          Requirements and decision evidence
                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 17 UPN727 cells stimulated with CD17 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                • Supported by the indexed evidence.
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 17 UPN727 cells stimulated with CD17 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 17 UPN727 cells stimulated with CD17 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              UPN727 cells stimulated with CD17 Plasma
                                                                                                              Characteristics
                                                                                                              responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM1844278
                                                                                                              sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 17
                                                                                                              source_name: UPN727 cells stimulated with CD17 Plasma
                                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                              GSM1844279

                                                                                                              Excluded

                                                                                                              UPN727 cells, Crohn’s disease (CD) plasma patients 18

                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 18 UPN727 cells stimulated with CD18 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 18 UPN727 cells stimulated with CD18 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 18 UPN727 cells stimulated with CD18 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                  Source metadata
                                                                                                                  Source name
                                                                                                                  UPN727 cells stimulated with CD18 Plasma
                                                                                                                  Characteristics
                                                                                                                  responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                  Description
                                                                                                                  Not reported
                                                                                                                  Indexed organism evidence
                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                  Indexed assay evidence
                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                  Source
                                                                                                                  GEO
                                                                                                                  Original indexed metadata
                                                                                                                  sample_accession: GSM1844279
                                                                                                                  sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 18
                                                                                                                  source_name: UPN727 cells stimulated with CD18 Plasma
                                                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                                  GSM1844280

                                                                                                                  Excluded

                                                                                                                  UPN727 cells, Crohn’s disease (CD) plasma patients 19

                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                  Requirements and decision evidence
                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 19 UPN727 cells stimulated with CD19 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                        • Supported by the indexed evidence.
                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 19 UPN727 cells stimulated with CD19 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                        • UPN727 cells, Crohn’s disease (CD) plasma patients 19 UPN727 cells stimulated with CD19 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                      Source metadata
                                                                                                                      Source name
                                                                                                                      UPN727 cells stimulated with CD19 Plasma
                                                                                                                      Characteristics
                                                                                                                      responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                      Description
                                                                                                                      Not reported
                                                                                                                      Indexed organism evidence
                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                      Indexed assay evidence
                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                      Source
                                                                                                                      GEO
                                                                                                                      Original indexed metadata
                                                                                                                      sample_accession: GSM1844280
                                                                                                                      sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 19
                                                                                                                      source_name: UPN727 cells stimulated with CD19 Plasma
                                                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                                      GSM1844281

                                                                                                                      Excluded

                                                                                                                      UPN727 cells, Crohn’s disease (CD) plasma patients 20

                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                      Requirements and decision evidence
                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 20 UPN727 cells stimulated with CD20 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                            • Supported by the indexed evidence.
                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 20 UPN727 cells stimulated with CD20 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                            • UPN727 cells, Crohn’s disease (CD) plasma patients 20 UPN727 cells stimulated with CD20 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          UPN727 cells stimulated with CD20 Plasma
                                                                                                                          Characteristics
                                                                                                                          responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM1844281
                                                                                                                          sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 20
                                                                                                                          source_name: UPN727 cells stimulated with CD20 Plasma
                                                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                                          GSM1844282

                                                                                                                          Excluded

                                                                                                                          UPN727 cells, Crohn’s disease (CD) plasma patients 21

                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 21 UPN727 cells stimulated with CD21 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 21 UPN727 cells stimulated with CD21 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                • UPN727 cells, Crohn’s disease (CD) plasma patients 21 UPN727 cells stimulated with CD21 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                              Source metadata
                                                                                                                              Source name
                                                                                                                              UPN727 cells stimulated with CD21 Plasma
                                                                                                                              Characteristics
                                                                                                                              responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                              Description
                                                                                                                              Not reported
                                                                                                                              Indexed organism evidence
                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                              Indexed assay evidence
                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                              Source
                                                                                                                              GEO
                                                                                                                              Original indexed metadata
                                                                                                                              sample_accession: GSM1844282
                                                                                                                              sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 21
                                                                                                                              source_name: UPN727 cells stimulated with CD21 Plasma
                                                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                                              GSM1844283

                                                                                                                              Excluded

                                                                                                                              UPN727 cells, Crohn’s disease (CD) plasma patients 22

                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                              Requirements and decision evidence
                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 22 UPN727 cells stimulated with CD22 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 22 UPN727 cells stimulated with CD22 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                    • UPN727 cells, Crohn’s disease (CD) plasma patients 22 UPN727 cells stimulated with CD22 Plasma responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                                  Source metadata
                                                                                                                                  Source name
                                                                                                                                  UPN727 cells stimulated with CD22 Plasma
                                                                                                                                  Characteristics
                                                                                                                                  responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)
                                                                                                                                  Description
                                                                                                                                  Not reported
                                                                                                                                  Indexed organism evidence
                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                  Indexed assay evidence
                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                  Source
                                                                                                                                  GEO
                                                                                                                                  Original indexed metadata
                                                                                                                                  sample_accession: GSM1844283
                                                                                                                                  sample_title: UPN727 cells, Crohn’s disease (CD)  plasma patients 22
                                                                                                                                  source_name: UPN727 cells stimulated with CD22 Plasma
                                                                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: Crohn’s disease (CD)

                                                                                                                                  GSM1844284

                                                                                                                                  Excluded

                                                                                                                                  UPN727 cells, ulcerative colitis (UC) plasma patients 01

                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                  Requirements and decision evidence
                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 01 UPN727 cells stimulated with UC01 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 01 UPN727 cells stimulated with UC01 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 01 UPN727 cells stimulated with UC01 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      UPN727 cells stimulated with UC01 Plasma
                                                                                                                                      Characteristics
                                                                                                                                      responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM1844284
                                                                                                                                      sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 01
                                                                                                                                      source_name: UPN727 cells stimulated with UC01 Plasma
                                                                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                      GSM1844285

                                                                                                                                      Excluded

                                                                                                                                      UPN727 cells, ulcerative colitis (UC) plasma patients 02

                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 02 UPN727 cells stimulated with UC02 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 02 UPN727 cells stimulated with UC02 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 02 UPN727 cells stimulated with UC02 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                          Source metadata
                                                                                                                                          Source name
                                                                                                                                          UPN727 cells stimulated with UC02 Plasma
                                                                                                                                          Characteristics
                                                                                                                                          responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                          Description
                                                                                                                                          Not reported
                                                                                                                                          Indexed organism evidence
                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                          Indexed assay evidence
                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                          Source
                                                                                                                                          GEO
                                                                                                                                          Original indexed metadata
                                                                                                                                          sample_accession: GSM1844285
                                                                                                                                          sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 02
                                                                                                                                          source_name: UPN727 cells stimulated with UC02 Plasma
                                                                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                          GSM1844286

                                                                                                                                          Excluded

                                                                                                                                          UPN727 cells, ulcerative colitis (UC) plasma patients 03

                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                          Requirements and decision evidence
                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 03 UPN727 cells stimulated with UC03 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 03 UPN727 cells stimulated with UC03 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 03 UPN727 cells stimulated with UC03 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                              Source metadata
                                                                                                                                              Source name
                                                                                                                                              UPN727 cells stimulated with UC03 Plasma
                                                                                                                                              Characteristics
                                                                                                                                              responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                              Description
                                                                                                                                              Not reported
                                                                                                                                              Indexed organism evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Indexed assay evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Source
                                                                                                                                              GEO
                                                                                                                                              Original indexed metadata
                                                                                                                                              sample_accession: GSM1844286
                                                                                                                                              sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 03
                                                                                                                                              source_name: UPN727 cells stimulated with UC03 Plasma
                                                                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                              GSM1844287

                                                                                                                                              Excluded

                                                                                                                                              UPN727 cells, ulcerative colitis (UC) plasma patients 04

                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                              Requirements and decision evidence
                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 04 UPN727 cells stimulated with UC04 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 04 UPN727 cells stimulated with UC04 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 04 UPN727 cells stimulated with UC04 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  UPN727 cells stimulated with UC04 Plasma
                                                                                                                                                  Characteristics
                                                                                                                                                  responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM1844287
                                                                                                                                                  sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 04
                                                                                                                                                  source_name: UPN727 cells stimulated with UC04 Plasma
                                                                                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                  GSM1844288

                                                                                                                                                  Excluded

                                                                                                                                                  UPN727 cells, ulcerative colitis (UC) plasma patients 05

                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 05 UPN727 cells stimulated with UC05 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 05 UPN727 cells stimulated with UC05 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 05 UPN727 cells stimulated with UC05 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                      Source metadata
                                                                                                                                                      Source name
                                                                                                                                                      UPN727 cells stimulated with UC05 Plasma
                                                                                                                                                      Characteristics
                                                                                                                                                      responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                      Description
                                                                                                                                                      Not reported
                                                                                                                                                      Indexed organism evidence
                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                      Indexed assay evidence
                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                      Source
                                                                                                                                                      GEO
                                                                                                                                                      Original indexed metadata
                                                                                                                                                      sample_accession: GSM1844288
                                                                                                                                                      sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 05
                                                                                                                                                      source_name: UPN727 cells stimulated with UC05 Plasma
                                                                                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                      GSM1844289

                                                                                                                                                      Excluded

                                                                                                                                                      UPN727 cells, ulcerative colitis (UC) plasma patients 06

                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 06 UPN727 cells stimulated with UC06 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 06 UPN727 cells stimulated with UC06 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 06 UPN727 cells stimulated with UC06 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                          Source metadata
                                                                                                                                                          Source name
                                                                                                                                                          UPN727 cells stimulated with UC06 Plasma
                                                                                                                                                          Characteristics
                                                                                                                                                          responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                          Description
                                                                                                                                                          Not reported
                                                                                                                                                          Indexed organism evidence
                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                          Indexed assay evidence
                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                          Source
                                                                                                                                                          GEO
                                                                                                                                                          Original indexed metadata
                                                                                                                                                          sample_accession: GSM1844289
                                                                                                                                                          sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 06
                                                                                                                                                          source_name: UPN727 cells stimulated with UC06 Plasma
                                                                                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                          GSM1844290

                                                                                                                                                          Excluded

                                                                                                                                                          UPN727 cells, ulcerative colitis (UC) plasma patients 07

                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 07 UPN727 cells stimulated with UC07 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 07 UPN727 cells stimulated with UC07 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 07 UPN727 cells stimulated with UC07 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              UPN727 cells stimulated with UC07 Plasma
                                                                                                                                                              Characteristics
                                                                                                                                                              responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM1844290
                                                                                                                                                              sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 07
                                                                                                                                                              source_name: UPN727 cells stimulated with UC07 Plasma
                                                                                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                              GSM1844291

                                                                                                                                                              Excluded

                                                                                                                                                              UPN727 cells, ulcerative colitis (UC) plasma patients 08

                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 08 UPN727 cells stimulated with UC08 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 08 UPN727 cells stimulated with UC08 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 08 UPN727 cells stimulated with UC08 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                  Source metadata
                                                                                                                                                                  Source name
                                                                                                                                                                  UPN727 cells stimulated with UC08 Plasma
                                                                                                                                                                  Characteristics
                                                                                                                                                                  responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                  Description
                                                                                                                                                                  Not reported
                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Source
                                                                                                                                                                  GEO
                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                  sample_accession: GSM1844291
                                                                                                                                                                  sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 08
                                                                                                                                                                  source_name: UPN727 cells stimulated with UC08 Plasma
                                                                                                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                  GSM1844292

                                                                                                                                                                  Excluded

                                                                                                                                                                  UPN727 cells, ulcerative colitis (UC) plasma patients 09

                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 09 UPN727 cells stimulated with UC09 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 09 UPN727 cells stimulated with UC09 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 09 UPN727 cells stimulated with UC09 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                      Source metadata
                                                                                                                                                                      Source name
                                                                                                                                                                      UPN727 cells stimulated with UC09 Plasma
                                                                                                                                                                      Characteristics
                                                                                                                                                                      responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                      Description
                                                                                                                                                                      Not reported
                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                      Source
                                                                                                                                                                      GEO
                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                      sample_accession: GSM1844292
                                                                                                                                                                      sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 09
                                                                                                                                                                      source_name: UPN727 cells stimulated with UC09 Plasma
                                                                                                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                      GSM1844293

                                                                                                                                                                      Excluded

                                                                                                                                                                      UPN727 cells, ulcerative colitis (UC) plasma patients 10

                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 10 UPN727 cells stimulated with UC10 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 10 UPN727 cells stimulated with UC10 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 10 UPN727 cells stimulated with UC10 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          UPN727 cells stimulated with UC10 Plasma
                                                                                                                                                                          Characteristics
                                                                                                                                                                          responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM1844293
                                                                                                                                                                          sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 10
                                                                                                                                                                          source_name: UPN727 cells stimulated with UC10 Plasma
                                                                                                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                          GSM1844294

                                                                                                                                                                          Excluded

                                                                                                                                                                          UPN727 cells, ulcerative colitis (UC) plasma patients 11

                                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 11 UPN727 cells stimulated with UC11 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 11 UPN727 cells stimulated with UC11 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 11 UPN727 cells stimulated with UC11 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                              Source metadata
                                                                                                                                                                              Source name
                                                                                                                                                                              UPN727 cells stimulated with UC11 Plasma
                                                                                                                                                                              Characteristics
                                                                                                                                                                              responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                              Description
                                                                                                                                                                              Not reported
                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                              Source
                                                                                                                                                                              GEO
                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                              sample_accession: GSM1844294
                                                                                                                                                                              sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 11
                                                                                                                                                                              source_name: UPN727 cells stimulated with UC11 Plasma
                                                                                                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                              GSM1844295

                                                                                                                                                                              Excluded

                                                                                                                                                                              UPN727 cells, ulcerative colitis (UC) plasma patients 12

                                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 12 UPN727 cells stimulated with UC12 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 12 UPN727 cells stimulated with UC12 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                    • UPN727 cells, ulcerative colitis (UC) plasma patients 12 UPN727 cells stimulated with UC12 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                  Source metadata
                                                                                                                                                                                  Source name
                                                                                                                                                                                  UPN727 cells stimulated with UC12 Plasma
                                                                                                                                                                                  Characteristics
                                                                                                                                                                                  responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                  Description
                                                                                                                                                                                  Not reported
                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                  Source
                                                                                                                                                                                  GEO
                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                  sample_accession: GSM1844295
                                                                                                                                                                                  sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 12
                                                                                                                                                                                  source_name: UPN727 cells stimulated with UC12 Plasma
                                                                                                                                                                                  characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                                  GSM1844296

                                                                                                                                                                                  Excluded

                                                                                                                                                                                  UPN727 cells, ulcerative colitis (UC) plasma patients 13

                                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 13 UPN727 cells stimulated with UC13 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 13 UPN727 cells stimulated with UC13 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                        • UPN727 cells, ulcerative colitis (UC) plasma patients 13 UPN727 cells stimulated with UC13 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      UPN727 cells stimulated with UC13 Plasma
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM1844296
                                                                                                                                                                                      sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 13
                                                                                                                                                                                      source_name: UPN727 cells stimulated with UC13 Plasma
                                                                                                                                                                                      characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                                      GSM1844297

                                                                                                                                                                                      Excluded

                                                                                                                                                                                      UPN727 cells, ulcerative colitis (UC) plasma patients 14

                                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 14 UPN727 cells stimulated with UC14 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 14 UPN727 cells stimulated with UC14 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                            • UPN727 cells, ulcerative colitis (UC) plasma patients 14 UPN727 cells stimulated with UC14 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                          Source metadata
                                                                                                                                                                                          Source name
                                                                                                                                                                                          UPN727 cells stimulated with UC14 Plasma
                                                                                                                                                                                          Characteristics
                                                                                                                                                                                          responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                          Description
                                                                                                                                                                                          Not reported
                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                          Source
                                                                                                                                                                                          GEO
                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                          sample_accession: GSM1844297
                                                                                                                                                                                          sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 14
                                                                                                                                                                                          source_name: UPN727 cells stimulated with UC14 Plasma
                                                                                                                                                                                          characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)

                                                                                                                                                                                          GSM1844298

                                                                                                                                                                                          Excluded

                                                                                                                                                                                          UPN727 cells, ulcerative colitis (UC) plasma patients 15

                                                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 15 UPN727 cells stimulated with UC15 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 15 UPN727 cells stimulated with UC15 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                • UPN727 cells, ulcerative colitis (UC) plasma patients 15 UPN727 cells stimulated with UC15 Plasma responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                              Source metadata
                                                                                                                                                                                              Source name
                                                                                                                                                                                              UPN727 cells stimulated with UC15 Plasma
                                                                                                                                                                                              Characteristics
                                                                                                                                                                                              responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)
                                                                                                                                                                                              Description
                                                                                                                                                                                              Not reported
                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                              Source
                                                                                                                                                                                              GEO
                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                              sample_accession: GSM1844298
                                                                                                                                                                                              sample_title: UPN727 cells, ulcerative colitis (UC)  plasma patients 15
                                                                                                                                                                                              source_name: UPN727 cells stimulated with UC15 Plasma
                                                                                                                                                                                              characteristics: responder cell line: UPN727; diagnosis of plasma donor: ulcerative colitis (UC)