Characterization of LncRNA BC012900 among long non-coding RNAs differentially expressed in ulcerative colitis

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

34 case / 22 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 57 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Wu F, Huang Y, Dong F, Kwon JH
Contact name: Yong Huang
Submission date: 2015-08-20
Last update: 2017-06-05
Organization: University of Viginia
Department: Medicine
Public date: 2016-01-28
Experiment types: Non-coding RNA profiling by array
Platforms: GPL20830 Invitrogen Ncode Human Noncoding RNA Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA293411

Summary

In this report, we provide a comprehensive assessment of the expression of ~17000 lncRNAs on 60 colonic samplesin colon tissues from patients with IBD, irritable bowel syndrome, infectious colitis and healthy controls. We also explored the possibility of using cRNAs as biomarkers distinguish active UC from normal. To investigate the mechanism offunctional role these IBD-associated lncRNAs in the development of IBD, we then focused on a ncRNA highlyexpressed in the UC-associated lncRNAactive UC, BC012900. We , to characterized its cellular localization, expression regulation and biological function. We . We found that BC012900 and its adjacent gene, dual specificity phosphatase 4 (DUSP4) are functionally distinct, with BC012900 modulating. Overexpression of BC012900 resulted in usceptibility to apoptosis. Our study provides the first evidence that lncRNAs may play potential roles in development and persistence of active UC.

Overall design

LncRNAs microarray and quantitative RT-PCR were performed on 60 sigmoid biopsies from patients with active ulcerative colitis (UC) and relevant controls.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 57 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication Ulcerative Colitis-Associated Long Noncoding RNA, BC012900, Regulates Intestinal Epithelial Cell Apoptosis. Inflammatory bowel diseases, 2016 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

90% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

8/15 pts

A small number of samples remain unassigned.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

1 samples are still unassigned.
Secondary RNA assay context should be analyzed separately from ordinary bulk RNA-seq.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 1 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Ulcerative colitis 34 samples
Likely control group Mixed controls 22 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Interpreted disease metadata: Crohn's disease, Infectious disease or host response, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 26937624.
Publication context: Ulcerative Colitis-Associated Long Noncoding RNA, BC012900, Regulates Intestinal Epithelial Cell Apoptosis.. Inflammatory bowel diseases, 2016. PMID 26937624. DOI 10.1097/MIB.0000000000000691.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.
Microarray expression context was detected; compare separately from RNA-seq cohorts.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

175 fields

Field Value Source Derived by Confidence Evidence Reason

assay_type microarray GSE72221 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE72221 dataset_title: Characterization of LncRNA BC012900 among long non-coding RNAs differentially expressed in ulcerative colitis organism: Homo sapiens a... keyword match keyword match: microarray

collection_method biopsy GSM1857992 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF156_10661_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857993 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF157_10754_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857994 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF246_10800_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857995 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N104_110710_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857996 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N122_0649_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857997 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N188_10701_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857998 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N190_10699_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1857999 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N195_10697_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858000 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N199_10755_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858001 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N209_10753_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858002 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N210_10751_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858003 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N212_10801_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858004 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N226_10803_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858005 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N234_10758_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858006 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N239_10757_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858007 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N66_0640_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858008 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N94_110711_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858009 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC100ina_10698_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858010 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC105ina_10661_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858011 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC109ina_10754_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858012 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC118ina_10752_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858013 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC121ina_10802_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858014 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC127ina_10750_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858015 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC130ina_10800_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858016 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC159ina_10756_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858017 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC165ina_0649_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858018 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC167act_10756_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858019 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC183ina_10757_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858020 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC70ina_110708_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858021 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC87ina_110707_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858022 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC90ina_110727_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858023 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC93ina_10700_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858024 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC110act_10701_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858025 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC139act_10697_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858026 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC143act_10755_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858027 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC144act_10758_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858028 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC148act_10752_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858029 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC153act_10751_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858030 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC161act_10803_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858031 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC168act_10801_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858032 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC169act_10753_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858033 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC178act_10769_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858034 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC63act_0640_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858035 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC71act_110711_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858036 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC73act2_10772_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858037 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC74act_110708_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858038 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD111act_10698_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858039 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD131act_10750_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858040 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD150act_10802_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858041 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD33act_110707_1 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858042 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD84act2_10772_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858043 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS108_10771_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858044 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS184e_10769_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858045 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS189_10770H_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858046 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS96_110727_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858047 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS99_10771_1 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1858048 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF255_10749_1 Biopsy diagnosis: infectious colitis; activity: active; group: INF controlled vocabulary controlled vocabulary collection method match: biopsy

disease inflammatory bowel disease GSE72221 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE72221 dataset_title: Characterization of LncRNA BC012900 among long non-coding RNAs differentially expressed in ulcerative colitis organism: Homo sapiens a... controlled vocabulary controlled vocabulary disease match: ibd

disease ulcerative colitis GSE72221 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE72221 dataset_title: Characterization of LncRNA BC012900 among long non-coding RNAs differentially expressed in ulcerative colitis organism: Homo sapiens a... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858009 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC100ina_10698_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858010 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC105ina_10661_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858011 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC109ina_10754_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858012 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC118ina_10752_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858013 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC121ina_10802_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858014 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC127ina_10750_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858015 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC130ina_10800_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858016 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC159ina_10756_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858017 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC165ina_0649_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858018 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC167act_10756_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858019 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC183ina_10757_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858020 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC70ina_110708_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858021 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC87ina_110707_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858022 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC90ina_110727_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858023 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC93ina_10700_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858024 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC110act_10701_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858025 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC139act_10697_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858026 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC143act_10755_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858027 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC144act_10758_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858028 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC148act_10752_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858029 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC153act_10751_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858030 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC161act_10803_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858031 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC168act_10801_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858032 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC169act_10753_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858033 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC178act_10769_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858034 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC63act_0640_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858035 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC71act_110711_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858036 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC73act2_10772_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1858037 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis UC74act_110708_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM1858038 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD111act_10698_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1858039 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD131act_10750_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1858040 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD150act_10802_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1858041 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD33act_110707_1 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM1858042 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD84act2_10772_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary disease match: Crohn's disease

organism Homo sapiens GSE72221 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE72221 dataset_title: Characterization of LncRNA BC012900 among long non-coding RNAs differentially expressed in ulcerative colitis organism: Homo sapiens a... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM1857992 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF156_10661_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857993 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF157_10754_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857994 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF246_10800_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857995 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N104_110710_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857996 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N122_0649_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857997 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N188_10701_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857998 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N190_10699_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1857999 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N195_10697_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858000 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N199_10755_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858001 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N209_10753_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858002 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N210_10751_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858003 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N212_10801_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858004 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N226_10803_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858005 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N234_10758_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858006 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N239_10757_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858007 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N66_0640_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858008 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy N94_110711_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858009 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC100ina_10698_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858010 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC105ina_10661_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858011 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC109ina_10754_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858012 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC118ina_10752_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858013 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC121ina_10802_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858014 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC127ina_10750_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858015 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC130ina_10800_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858016 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC159ina_10756_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858017 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC165ina_0649_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858018 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC167act_10756_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858019 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC183ina_10757_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858020 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC70ina_110708_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858021 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC87ina_110707_2 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858022 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC90ina_110727_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858023 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC93ina_10700_1 Biopsy diagnosis: Ulcerative colitis; activity: inactive; group: iUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858024 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC110act_10701_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858025 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC139act_10697_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858026 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC143act_10755_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858027 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC144act_10758_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858028 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC148act_10752_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858029 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC153act_10751_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858030 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC161act_10803_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858031 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC168act_10801_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858032 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC169act_10753_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858033 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC178act_10769_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858034 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC63act_0640_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858035 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC71act_110711_2 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858036 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC73act2_10772_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858037 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy UC74act_110708_1 Biopsy diagnosis: Ulcerative colitis; activity: active; group: aUC controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858038 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD111act_10698_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858039 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD131act_10750_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858040 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD150act_10802_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858041 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD33act_110707_1 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858042 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy CD84act2_10772_2 Biopsy diagnosis: Crohn’s disease; activity: active; group: aCD controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858043 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS108_10771_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858044 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS184e_10769_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858045 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS189_10770H_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858046 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS96_110727_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858047 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy IBS99_10771_1 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1858048 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy INF255_10749_1 Biopsy diagnosis: infectious colitis; activity: active; group: INF controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type normal tissue GSM1857992 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal INF156_10661_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857993 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal INF157_10754_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857994 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal INF246_10800_2 Biopsy diagnosis: infectious colitis; activity: normal; group: INF controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857995 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N104_110710_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857996 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N122_0649_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857997 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N188_10701_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857998 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N190_10699_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1857999 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N195_10697_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858000 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N199_10755_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858001 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N209_10753_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858002 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N210_10751_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858003 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N212_10801_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858004 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N226_10803_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858005 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N234_10758_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858006 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N239_10757_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858007 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N66_0640_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858008 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal N94_110711_1 Biopsy diagnosis: normal; activity: normal; group: CTR controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858043 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal IBS108_10771_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858044 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal IBS184e_10769_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858045 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal IBS189_10770H_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858046 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal IBS96_110727_2 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM1858047 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal IBS99_10771_1 Biopsy diagnosis: irritable bowel syndrome; activity: normal; group: IBS controlled vocabulary controlled vocabulary sample type match: normal

tissue colon GSE72221 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE72221 dataset_title: Characterization of LncRNA BC012900 among long non-coding RNAs differentially expressed in ulcerative colitis organism: Homo sapiens a... controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

57 rows shown Show Hide

Study totals: Case 34 | Control 22 | Unassigned 1 | Excluded 0 | Ambiguous 0 57 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Ulcerative colitis	Case	GSM1858009	UC100ina_10698_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858010	UC105ina_10661_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858011	UC109ina_10754_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858012	UC118ina_10752_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858013	UC121ina_10802_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858014	UC127ina_10750_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858015	UC130ina_10800_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858016	UC159ina_10756_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858017	UC165ina_0649_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858018	UC167act_10756_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858019	UC183ina_10757_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858020	UC70ina_110708_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858021	UC87ina_110707_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858022	UC90ina_110727_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858023	UC93ina_10700_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Inactive; Group: iUC	Case marker detected.
Ulcerative colitis	Case	GSM1858024	UC110act_10701_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858025	UC139act_10697_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858026	UC143act_10755_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858027	UC144act_10758_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858028	UC148act_10752_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858029	UC153act_10751_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858030	UC161act_10803_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858031	UC168act_10801_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858032	UC169act_10753_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858033	UC178act_10769_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858034	UC63act_0640_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858035	UC71act_110711_2	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858036	UC73act2_10772_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Ulcerative colitis	Case	GSM1858037	UC74act_110708_1	Biopsy Diagnosis: Ulcerative colitis; Activity: Active; Group: aUC	Case marker detected.
Crohn's disease	Case	GSM1858038	CD111act_10698_2	Biopsy Diagnosis: Crohn’s disease; Activity: Active; Group: aCD	Case marker detected.
Crohn's disease	Case	GSM1858039	CD131act_10750_2	Biopsy Diagnosis: Crohn’s disease; Activity: Active; Group: aCD	Case marker detected.
Crohn's disease	Case	GSM1858040	CD150act_10802_2	Biopsy Diagnosis: Crohn’s disease; Activity: Active; Group: aCD	Case marker detected.
Crohn's disease	Case	GSM1858041	CD33act_110707_1	Biopsy Diagnosis: Crohn’s disease; Activity: Active; Group: aCD	Case marker detected.
Crohn's disease	Case	GSM1858042	CD84act2_10772_2	Biopsy Diagnosis: Crohn’s disease; Activity: Active; Group: aCD	Case marker detected.
Normal tissue	Control	GSM1857992	INF156_10661_2	Biopsy Diagnosis: Infectious colitis; Activity: Normal; Group: INF	Control marker detected.
Normal tissue	Control	GSM1857993	INF157_10754_2	Biopsy Diagnosis: Infectious colitis; Activity: Normal; Group: INF	Control marker detected.
Normal tissue	Control	GSM1857994	INF246_10800_2	Biopsy Diagnosis: Infectious colitis; Activity: Normal; Group: INF	Control marker detected.
Healthy control	Control	GSM1857995	N104_110710_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1857996	N122_0649_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1857997	N188_10701_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1857998	N190_10699_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1857999	N195_10697_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858000	N199_10755_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858001	N209_10753_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858002	N210_10751_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858003	N212_10801_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858004	N226_10803_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858005	N234_10758_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858006	N239_10757_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858007	N66_0640_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Healthy control	Control	GSM1858008	N94_110711_1	Biopsy Diagnosis: Normal; Activity: Normal; Group: CTR	Sample-local control marker detected.
Normal tissue	Control	GSM1858043	IBS108_10771_2	Biopsy Diagnosis: Irritable bowel syndrome; Activity: Normal; Group: IBS	Control marker detected.
Normal tissue	Control	GSM1858044	IBS184e_10769_2	Biopsy Diagnosis: Irritable bowel syndrome; Activity: Normal; Group: IBS	Control marker detected.
Normal tissue	Control	GSM1858045	IBS189_10770H_2	Biopsy Diagnosis: Irritable bowel syndrome; Activity: Normal; Group: IBS	Control marker detected.
Normal tissue	Control	GSM1858046	IBS96_110727_2	Biopsy Diagnosis: Irritable bowel syndrome; Activity: Normal; Group: IBS	Control marker detected.
Normal tissue	Control	GSM1858047	IBS99_10771_1	Biopsy Diagnosis: Irritable bowel syndrome; Activity: Normal; Group: IBS	Control marker detected.
Unassigned	Unassigned	GSM1858048	INF255_10749_1	Biopsy Diagnosis: Infectious colitis; Activity: Active; Group: INF	No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort