GSE75214

Mucosal gene expression profiling in patients with inflammatory bowel disease study

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

133 case / 61 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
microarray
Organism
Homo sapiens
Whole-study samples
194 samples
Specimen
Biopsy
Reported/interpreted study design
Disease/model vs control Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
Arijs I, Vancamelbeke M, Vanhove W, De Hertogh G, Schuit F, Rutgeerts P, Vemeire S
Contact name
Ingrid Arijs
Submission date
2015-11-19
Last update
2018-07-26
Organization
KULeuven
Department
Clinical and Experimental Medicine
Public date
2017-09-14
Experiment types
Expression profiling by array
Platforms
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Series type
Series
SubSeries
Not available
BioProject
PRJNA302811

Summary

Microarrays were used to analyze the gene expression in endoscopic-derived intestinal mucosal biopsies from patients with inflammatory bowel diseas (IBD) and controls

Overall design

Mucosal biopsies were obtained at endoscopy from the colon of 97 ulcerative colitis (UC), 8 Crohn's disease (CD) patients and 11 controls and from the (neo-)terminal ileum of 67 CD patients and 11 controls. The biopsies were taken at the most affected sites but at a distance of ulcerations. Disease activity was endoscopically assessed. Total RNA extracted from mucosal biopsies was used to analyze mRNA expression via Affymetrix Human Gene 1.0 ST arrays

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
194 GSM samples
 Primary source
recount3

Planned trusted source for processed count availability.

 No match found
Expression Atlas

Planned source for curated expression experiment links.

 No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

21 linked publications 21 DOIs

Primary publication

  1. Genetic and Transcriptomic Bases of Intestinal Epithelial Barrier Dysfunction in Inflammatory Bowel Disease. Inflammatory bowel diseases, 2017

Related publications

  1. Integrating transcriptomics, network pharmacology, and GraphBAN neural networks to identify biomarkers and regulatory mechanisms of classical traditional Chinese medicine formulations in ulcerative colitis. Naunyn-Schmiedeberg's archives of pharmacology, 2026
  2. Comprehensive analysis of monocyte palmitoylation-related genes IFITM3 and CCL3-CCR5 axis in crohn's disease progression: Insights from mendelian randomization, multi-omics integration, machine learning, and SHAP methodology. Computational biology and chemistry, 2026
  3. Identification of cholesterol homeostasis related genes and potential pathogenesis mechanisms in ulcerative colitis. The Journal of steroid biochemistry and molecular biology, 2025
  4. Transcriptomic exploration of key genes related to mitochondria and ferroptosis in inflammatory bowel disease and experimental validation. Scientific reports, 2025
  5. Study on the mechanism of action of HuaZhuoKeLi in modulating LCN2-mediated cellular pyroptosis to ameliorate ulcerative colitis. Scientific reports, 2026
  6. Machine learning-based identification of a metabolic cell death gene signature for assessing disease activity and immunological landscape in inflammatory bowel disease. Scientific reports, 2026
  7. HMGB1 Exacerbates Intestinal Barrier Damage by Inducing Ferroptosis Through the TLR4/NF-κB/GPX4 Pathway in Ulcerative Colitis. Mediators of inflammation, 2025
  8. Integrated Multiomics Elucidates Molecular Mechanisms of Bisphenol A in Exacerbating Crohn's Disease. Mediators of inflammation, 2026
  9. Investigating Immune Microenvironment of Inflammatory Bowel Disease and the Mitochondrial Metabolism-Related Molecular Mechanisms: Combining a Multiomics Approach and Experimental Validation. Omics : a journal of integrative biology, 2026
  10. Bioinformatic validation of LCN2 as a common hub gene for ferroptosis, pyroptosis and necroptosis in ulcerative colitis. BMC gastroenterology, 2026
  11. Identification and validation of aryl hydrocarbon receptor-associated hub genes in ulcerative colitis via integrated bioinformatics analysis. Human genomics, 2025
  12. PI3 as a Common Hub Gene Linking Atopic Dermatitis and Ulcerative Colitis Through Immune Cell Recruitment Mechanisms. Journal of inflammation research, 2025
  13. Multi-Cohort Transcriptomics Combined with Mendelian Randomization Identifies PPARGC1A, NAAA and GIPC2 as NLRP3 Inflammasome-Related Key Genes in Ulcerative Colitis. Journal of inflammation research, 2026
  14. Mendelian randomization integrated with multi-omics analysis identifies TNIK as a key gene in gut microbiota-induced IBD development. Frontiers in immunology, 2025
  15. A lactylation modification-related prediction model for the diagnosis of ulcerative colitis based on machine learning. Frontiers in immunology, 2026
  16. Multiomics integration of single-cell transcriptomics and bulk sequencing data identifies key biomarkers and predictive models for IBD subtype classification. Frontiers in medicine, 2026
  17. Revealing key genes and molecular mechanisms associated with dietary restriction in ulcerative colitis. Frontiers in molecular biosciences, 2026
  18. Exploring the molecular characteristics of inflammatory bowel disease from the perspective of hypoxia-related genes. Frontiers in pharmacology, 2025
  19. Integrating Transcriptomics and Machine Learning to Uncover the FLI1-PARP14-Immune Axis in Ulcerative Colitis Activity and Pathogenesis. Genes, 2025
  20. Integrative transcriptomic analysis unveils FXR as a key regulator of intestinal stemness and inflammation in ulcerative colitis. International journal of molecular medicine, 2026
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Inflamed tissue 133 samples
  • Likely control group Control 61 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 21 publications; 21 DOIs available: PMID 28885228, PMID 40645380, PMID 40689397, PMID 40771912, PMID 40901026.
  • Publication context: Genetic and Transcriptomic Bases of Intestinal Epithelial Barrier Dysfunction in Inflammatory Bowel Disease.. Inflammatory bowel diseases, 2017. PMID 28885228. DOI 10.1097/MIB.0000000000001246.
  • Publication context: Identification of cholesterol homeostasis related genes and potential pathogenesis mechanisms in ulcerative colitis.. The Journal of steroid biochemistry and molecular biology, 2025. PMID 40645380. DOI 10.1016/j.jsbmb.2025.106833.
  • Publication context: HMGB1 Exacerbates Intestinal Barrier Damage by Inducing Ferroptosis Through the TLR4/NF-κB/GPX4 Pathway in Ulcerative Colitis.. Mediators of inflammation, 2025. PMID 40689397. DOI 10.1155/mi/2395557.
  • Publication context: 18 additional linked PubMed publications are available.

Cautions

  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 1082 fields

Sample Group Preview

showing 100 of 194 preview rows Show Hide
Study totals: Case 133 | Control 61 | Unassigned 0 | Excluded 0 | Ambiguous 0 showing 100 of 194 preview rows
Group Role Accession Title Source / characteristics Reason
Inflamed tissue Case GSM1426071 CD_colon_active_1 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426072 CD_colon_active_2 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426073 CD_colon_active_3 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426074 CD_colon_active_4 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426075 CD_colon_active_5 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426076 CD_colon_active_6 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426077 CD_colon_active_7 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426078 CD_colon_active_8 Biopsy from inflamed colonic mucosa of active CD patient Tissue: Colon; Disease: Crohn's disease; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426090 UC_colon_active_105 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426091 UC_colon_active_106 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426092 UC_colon_active_107 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426093 UC_colon_active_108 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426094 UC_colon_active_109 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426095 UC_colon_active_110 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426096 UC_colon_active_111 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426097 UC_colon_active_112 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426098 UC_colon_active_113 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426099 UC_colon_active_114 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426100 UC_colon_active_115 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426101 UC_colon_active_116 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426102 UC_colon_active_117 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426103 UC_colon_active_118 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426104 UC_colon_active_119 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426105 UC_colon_active_120 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426106 UC_colon_active_121 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426107 UC_colon_active_122 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426108 UC_colon_active_123 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426109 UC_colon_active_124 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426110 UC_colon_active_125 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426111 UC_colon_active_126 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426112 UC_colon_active_127 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426113 UC_colon_active_128 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426114 UC_colon_active_129 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426115 UC_colon_active_130 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426116 UC_colon_active_131 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426117 UC_colon_active_132 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426118 UC_colon_active_133 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426119 UC_colon_active_134 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426120 UC_colon_active_135 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426121 UC_colon_active_136 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426122 UC_colon_active_137 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426123 UC_colon_active_138 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426124 UC_colon_active_139 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426125 UC_colon_active_140 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426126 UC_colon_active_141 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426127 UC_colon_active_142 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426128 UC_colon_active_143 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426129 UC_colon_active_144 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426130 UC_colon_active_145 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
Inflamed tissue Case GSM1426131 UC_colon_active_146 Biopsy from inflamed colonic mucosa of active UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Active Case marker detected.
83 additional case samples are hidden from this preview.
Control Control GSM1426079 Control_colon_76 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426080 Control_colon_77 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426081 Control_colon_78 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426082 Control_colon_79 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426083 Control_colon_80 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426084 Control_colon_81 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426085 Control_colon_82 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426086 Control_colon_83 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426087 Control_colon_84 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426088 Control_colon_85 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Control Control GSM1426089 Control_colon_86 Biopsy from normal colonic mucosa of control individual Tissue: Colon; Disease: Control; Disease activity: Normal Sample-local control marker detected.
Non-inflamed tissue Control GSM1426164 UC_colon_inactive_179 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426165 UC_colon_inactive_180 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426166 UC_colon_inactive_181 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426167 UC_colon_inactive_182 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426168 UC_colon_inactive_183 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426169 UC_colon_inactive_184 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426170 UC_colon_inactive_185 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426171 UC_colon_inactive_186 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426172 UC_colon_inactive_187 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426173 UC_colon_inactive_188 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426174 UC_colon_inactive_189 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426175 UC_colon_inactive_190 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426176 UC_colon_inactive_191 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426177 UC_colon_inactive_192 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426178 UC_colon_inactive_193 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426179 UC_colon_inactive_194 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426180 UC_colon_inactive_195 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426181 UC_colon_inactive_196 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426182 UC_colon_inactive_197 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426183 UC_colon_inactive_198 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426184 UC_colon_inactive_199 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426185 UC_colon_inactive_200 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1426186 UC_colon_inactive_201 Biopsy from uninflamed colonic mucosa of inactive UC patient Tissue: Colon; Disease: Ulcerative colitis; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945810 CD_ileum_inactive_60 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945811 CD_ileum_inactive_61 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945812 CD_ileum_inactive_62 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945813 CD_ileum_inactive_63 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945814 CD_ileum_inactive_64 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945815 CD_ileum_inactive_65 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945816 CD_ileum_inactive_66 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945817 CD_ileum_inactive_67 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945818 CD_ileum_inactive_68 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945819 CD_ileum_inactive_69 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945820 CD_ileum_inactive_70 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945821 CD_ileum_inactive_71 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945822 CD_ileum_inactive_72 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945823 CD_ileum_inactive_73 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945824 CD_ileum_inactive_74 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
Non-inflamed tissue Control GSM1945825 CD_ileum_inactive_75 Biopsy from uninflamed ileal mucosa of inactive CD patient Tissue: Ileum; Disease: CD; Disease activity: Inactive Sample-local control marker detected.
11 additional control samples are hidden from this preview.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.