GSE75916

Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative colitis

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 36 samples
Specimen: Organoid
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Dotti I, Salas A
Contact name: Azucena Salas
Submission date: 2015-12-11
Last update: 2016-11-03
Organization: IDIBAPS
Department: Gastroenterology
Public date: 2016-11-02
Experiment types: Expression profiling by array
Platforms: GPL20650 [HG-U219_Hs_ENTREZG_18] Affymetrix Human Genome U219 Array [CDF: Brainarray HGU219_Hs_ENTREZG_v18]
Series type: Series
SubSeries: Not available
BioProject: PRJNA305704

Summary

The transcriptional signature of mucosa of patients with ulcerative colitis (UC) in remission reveals long-lasting changes in the epithelial barrier which persist once the inflammatory response has resolved. In order to investigate if these changes are caused by primary defects in the epithelial cells, we generated in vitro epithelial organoid cultures (EpOCs) from colon samples of non-IBD controls and UC patients. After induction of differentiation, total RNA was extracted from both EpOCs and differentiated EpOCs (d-EpOCs) and used for hybridization on Affymetrix microarray.

Overall design

Colon samples from non-IBD controls and UC patients were collected. Both surgical and biopsy samples for non-IBD controls, and only biopsy samples for UC patients, were considered. Non-IBD controls were those subjects undergoing surgery for colorectal cancer, colonoscopy for mild gastrointestinal symptoms, or a screening for CRC and who presented no lesions during examination. Inclusion criteria for UC patients at the time of colonoscopy were: age between 18 and 80, diagnosis at least 5 years before inclusion, and exclusion of colitis-associated dysplasia or neoplasia. Endoscopic activity of UC at the time of colonoscopy was categorized according to the Mayo endoscopy subscore. Active disease was defined as Mayo endoscopic subscore of ≥1; quiescent disease was defined as a Mayo score of 0. Only samples from UC patients with inactive or mildly active disease were included in the generation of epithelial organoid cultures (EpOCs). Once expanded, EpOCs were induced to differentiate into the different epithelial lineages (d-EpOCs). Finally, a total of 19 human samples were analysed: 11 from non-IBD controls and 8 from UC patients. From these samples 19 EpOCs and 17 d-EpOCs were generated. RNA was then extracted and used for hybridization on Affymetrix microarrays.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 36 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication Alterations in the epithelial stem cell compartment could contribute to permanent changes in the mucosa of patients with ulcerative colitis. Gut, 2017 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

36 samples need manual grouping review.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

36 review-needed samples and 0 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples were flagged for manual review.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Colorectal cancer, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Ulcerative colitis 15 samples
Likely control group Control 21 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a model-system experiment. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Organoid. Comparison suitability: 0%.
Interpreted disease metadata: Colorectal cancer, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 27803115.
Publication context: Alterations in the epithelial stem cell compartment could contribute to permanent changes in the mucosa of patients with ulcerative colitis.. Gut, 2017. PMID 27803115. DOI 10.1136/gutjnl-2016-312609.

Cautions

Downgraded for tissue search because it is a model-system experiment.
Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Excluded sample type flags reduce suitability.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Organoid or cell-line experiment downgraded for patient tissue search intent.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Excluded model-system sample markers reduce suitability.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Multiple sample type labels or exclusion flags were detected.
Organoid samples appear to be included.
Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

201 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM1970196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: descending colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: descending colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970206 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970207 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970208 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970209 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970210 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970211 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970212 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970213 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970214 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970215 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970216 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970217 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970218 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970219 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970220 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970221 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970222 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970223 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970224 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970225 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970226 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970227 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970228 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970229 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970230 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM1970231 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon tissue: sigmoid colon sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... keyword match keyword match: microarray

collection_method biopsy GSM1970196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970206 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970209 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970210 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970211 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970212 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970219 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970220 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970221 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970222 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970223 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970224 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970227 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970228 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970229 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM1970230 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary collection method match: biopsy

disease colorectal cancer GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colorectal cancer dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease inflammatory bowel disease GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... controlled vocabulary controlled vocabulary disease match: ibd

disease ulcerative colitis GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease inflammatory bowel disease GSM1970199 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970200 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970201 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970202 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ... controlled vocabulary controlled vocabulary disease match: ibd

disease ulcerative colitis GSM1970203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease inflammatory bowel disease GSM1970205 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970206 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970207 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [94S] EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970208 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [94D] d-EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970209 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970210 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970211 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970212 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970213 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [115S] EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970214 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [115D] d-EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970215 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [117S] EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970216 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [117D] d-EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970217 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [128S] EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970218 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [128D] d-EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary disease match: ibd

disease ulcerative colitis GSM1970219 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970220 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970221 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970222 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970223 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970224 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease inflammatory bowel disease GSM1970225 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [149S] EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary disease match: ibd

disease inflammatory bowel disease GSM1970226 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd d-EpOC from non-IBD control [149D] d-EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary disease match: ibd

disease ulcerative colitis GSM1970227 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970228 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970229 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM1970230 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease inflammatory bowel disease GSM1970231 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd EpOC from non-IBD control [155S] EpOC from surgical sample of non-IBD control case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary disease match: ibd

excluded_sample_type organoid GSM1970196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970206 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970207 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [94S] EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970208 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [94D] d-EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970209 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970210 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970211 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970212 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970213 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [115S] EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970214 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [115D] d-EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970215 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [117S] EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970216 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [117D] d-EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970217 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [128S] EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970218 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [128D] d-EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970219 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970220 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970221 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970222 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970223 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970224 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970225 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [149S] EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970226 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from non-IBD control [149D] d-EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970227 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970228 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970229 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970230 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary organoid match: organoid

excluded_sample_type organoid GSM1970231 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence organoid EpOC from non-IBD control [155S] EpOC from surgical sample of non-IBD control case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary organoid match: organoid

organism Homo sapiens GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM1970196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970206 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970209 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970210 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970211 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970212 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970219 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970220 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970221 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970222 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970223 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970224 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970227 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970228 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970229 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM1970230 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary primary tissue match: biopsy

tissue colon GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSE75916 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal dataset_accession: GSE75916 dataset_title: Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative coli... controlled vocabulary controlled vocabulary tissue match: intestinal

tissue colon GSM1970196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970206 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970207 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [94S] EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970208 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [94D] d-EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970209 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970210 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970211 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970212 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970213 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [115S] EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970214 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [115D] d-EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970215 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [117S] EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970216 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [117D] d-EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970217 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [128S] EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970218 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [128D] d-EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970219 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970220 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970221 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970222 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970223 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970224 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970225 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [149S] EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970226 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from non-IBD control [149D] d-EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970227 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970228 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970229 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970230 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM1970231 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon EpOC from non-IBD control [155S] EpOC from surgical sample of non-IBD control case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (... controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

36 rows shown Show Hide

Study totals: Case 15 | Control 21 | Unassigned 0 | Excluded 0 | Ambiguous 0 36 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Ulcerative colitis	Case	GSM1970196	EpOC from UC patient [80S]	EpOC from biopsy sample of UC patient Case_id: 80; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 16; Age (years): 51	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970197	D-EpOC from UC patient [80D]	D-EpOC from biopsy sample of UC patient Case_id: 80; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 16; Age (years): 51	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970198	EpOC from UC patient [88S]	EpOC from biopsy sample of UC patient Case_id: 88; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 17; Age (years): 38	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970203	EpOC from UC patient [91S]	EpOC from biopsy sample of UC patient Case_id: 91; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 11; Age (years): 54	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970204	D-EpOC from UC patient [91D]	D-EpOC from biopsy sample of UC patient Case_id: 91; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 11; Age (years): 54	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970219	EpOC from UC patient [129S]	EpOC from biopsy sample of UC patient Case_id: 129; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 18; Age (years): 37	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970220	D-EpOC from UC patient [129D]	D-EpOC from biopsy sample of UC patient Case_id: 129; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 18; Age (years): 37	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970221	EpOC from UC patient [134S]	EpOC from biopsy sample of UC patient Case_id: 134; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 17; Age (years): 40	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970222	D-EpOC from UC patient [134D]	D-EpOC from biopsy sample of UC patient Case_id: 134; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 17; Age (years): 40	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970223	EpOC from UC patient [136S]	EpOC from biopsy sample of UC patient Case_id: 136; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 1; Uc_evolution_time (years): 17; Age (years): 50	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970224	D-EpOC from UC patient [136D]	D-EpOC from biopsy sample of UC patient Case_id: 136; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 1; Uc_evolution_time (years): 17; Age (years): 50	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970227	EpOC from UC patient [153S]	EpOC from biopsy sample of UC patient Case_id: 153; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 8; Age (years): 43	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970228	D-EpOC from UC patient [153D]	D-EpOC from biopsy sample of UC patient Case_id: 153; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 0; Uc_evolution_time (years): 8; Age (years): 43	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970229	EpOC from UC patient [154S]	EpOC from biopsy sample of UC patient Case_id: 154; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 1; Uc_evolution_time (years): 8; Age (years): 41	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Ulcerative colitis	Case	GSM1970230	D-EpOC from UC patient [154D]	D-EpOC from biopsy sample of UC patient Case_id: 154; Case_phenotype: Ulcerative colitis (UC) patient; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Endoscopic_mayo_score: 1; Uc_evolution_time (years): 8; Age (years): 41	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970199	EpOC from non-IBD control [89S]	EpOC from biopsy sample of non-IBD control Case_id: 89; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 30	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970200	D-EpOC from non-IBD control [89D]	D-EpOC from biopsy sample of non-IBD control Case_id: 89; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 30	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970201	EpOCs from non-IBD control [90S]	EpOC from biopsy sample of non-IBD control Case_id: 90; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Descending colon; Age (years): 53	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970202	D-EpOC from non-IBD control [90D]	D-EpOC from biopsy sample of non-IBD control Case_id: 90; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Descending colon; Age (years): 53	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970205	EpOC from non-IBD control [92S]	EpOC from biopsy sample of non-IBD control Case_id: 92; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 31	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970206	D-EpOC from non-IBD control [92D]	D-EpOC from biopsy sample of non-IBD control Case_id: 92; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 31	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970207	EpOC from non-IBD control [94S]	EpOC from surgical sample of non-IBD control Case_id: 94; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 48	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970208	D-EpOC from non-IBD control [94D]	D-EpOC from surgical sample of non-IBD control Case_id: 94; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 48	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970209	EpOC from non-IBD control [112S]	EpOC from biopsy sample of non-IBD control Case_id: 112; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 66	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970210	D-EpOC from non-IBD control [112D]	D-EpOC from biopsy sample of non-IBD control Case_id: 112; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 66	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970211	EpOC from non-IBD control [113S]	EpOC from biopsy sample of non-IBD control Case_id: 113; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 57	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970212	D-EpOC from non-IBD control [113D]	D-EpOC from biopsy sample of non-IBD control Case_id: 113; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 57	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970213	EpOC from non-IBD control [115S]	EpOC from surgical sample of non-IBD control Case_id: 115; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 64	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970214	D-EpOC from non-IBD control [115D]	D-EpOC from surgical sample of non-IBD control Case_id: 115; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 64	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970215	EpOC from non-IBD control [117S]	EpOC from surgical sample of non-IBD control Case_id: 117; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 52	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970216	D-EpOC from non-IBD control [117D]	D-EpOC from surgical sample of non-IBD control Case_id: 117; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 52	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970217	EpOC from non-IBD control [128S]	EpOC from surgical sample of non-IBD control Case_id: 128; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 77	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970218	D-EpOC from non-IBD control [128D]	D-EpOC from surgical sample of non-IBD control Case_id: 128; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 77	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970225	EpOC from non-IBD control [149S]	EpOC from surgical sample of non-IBD control Case_id: 149; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 56	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970226	D-EpOC from non-IBD control [149D]	D-EpOC from surgical sample of non-IBD control Case_id: 149; Case_phenotype: Non-IBD control; Organoid_culture: D-EpOC; Tissue: Sigmoid colon; Age (years): 56	organoid: Standalone model-system marker retained for comparison grouping: organoid.
Control	Control	GSM1970231	EpOC from non-IBD control [155S]	EpOC from surgical sample of non-IBD control Case_id: 155; Case_phenotype: Non-IBD control; Organoid_culture: EpOC; Tissue: Sigmoid colon; Age (years): 57	organoid: Standalone model-system marker retained for comparison grouping: organoid.

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