EpOC from UC patient [80S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
- EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
- EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970196
sample_title: EpOC from UC patient [80S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51
d-EpOC from UC patient [80D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
- d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
- d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970197
sample_title: d-EpOC from UC patient [80D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51
EpOC from UC patient [88S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
- EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
- EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 38
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970198
sample_title: EpOC from UC patient [88S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 38
EpOC from non-IBD control [89S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
- EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
- EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
Source metadata
- Source name
- EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 30
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970199
sample_title: EpOC from non-IBD control [89S]
source_name: EpOC from biopsy sample of non-IBD control
characteristics: case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 30
d-EpOC from non-IBD control [89D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
- d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
- d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
Source metadata
- Source name
- d-EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 30
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970200
sample_title: d-EpOC from non-IBD control [89D]
source_name: d-EpOC from biopsy sample of non-IBD control
characteristics: case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 30
EpOCs from non-IBD control [90S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
- EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
- EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
Source metadata
- Source name
- EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (years): 53
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970201
sample_title: EpOCs from non-IBD control [90S]
source_name: EpOC from biopsy sample of non-IBD control
characteristics: case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (years): 53
d-EpOC from non-IBD control [90D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
- d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
- d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
Source metadata
- Source name
- d-EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; age (years): 53
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970202
sample_title: d-EpOC from non-IBD control [90D]
source_name: d-EpOC from biopsy sample of non-IBD control
characteristics: case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; age (years): 53
EpOC from UC patient [91S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
- EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
- EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970203
sample_title: EpOC from UC patient [91S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54
d-EpOC from UC patient [91D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
- d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
- d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970204
sample_title: d-EpOC from UC patient [91D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54
EpOC from non-IBD control [92S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
- EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
- EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
Source metadata
- Source name
- EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 31
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970205
sample_title: EpOC from non-IBD control [92S]
source_name: EpOC from biopsy sample of non-IBD control
characteristics: case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 31
d-EpOC from non-IBD control [92D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
- d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
- d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
Source metadata
- Source name
- d-EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 31
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970206
sample_title: d-EpOC from non-IBD control [92D]
source_name: d-EpOC from biopsy sample of non-IBD control
characteristics: case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 31
EpOC from non-IBD control [94S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [94S] EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 48
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970207
sample_title: EpOC from non-IBD control [94S]
source_name: EpOC from surgical sample of non-IBD control
characteristics: case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 48
d-EpOC from non-IBD control [94D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [94D] d-EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- d-EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 48
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970208
sample_title: d-EpOC from non-IBD control [94D]
source_name: d-EpOC from surgical sample of non-IBD control
characteristics: case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 48
EpOC from non-IBD control [112S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
- EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
- EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
Source metadata
- Source name
- EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 66
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970209
sample_title: EpOC from non-IBD control [112S]
source_name: EpOC from biopsy sample of non-IBD control
characteristics: case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 66
d-EpOC from non-IBD control [112D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
- d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
- d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
Source metadata
- Source name
- d-EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 66
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970210
sample_title: d-EpOC from non-IBD control [112D]
source_name: d-EpOC from biopsy sample of non-IBD control
characteristics: case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 66
EpOC from non-IBD control [113S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
- EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
- EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
Source metadata
- Source name
- EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970211
sample_title: EpOC from non-IBD control [113S]
source_name: EpOC from biopsy sample of non-IBD control
characteristics: case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57
d-EpOC from non-IBD control [113D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
- d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
- d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
Source metadata
- Source name
- d-EpOC from biopsy sample of non-IBD control
- Characteristics
- case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 57
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970212
sample_title: d-EpOC from non-IBD control [113D]
source_name: d-EpOC from biopsy sample of non-IBD control
characteristics: case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 57
EpOC from non-IBD control [115S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [115S] EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 64
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970213
sample_title: EpOC from non-IBD control [115S]
source_name: EpOC from surgical sample of non-IBD control
characteristics: case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 64
d-EpOC from non-IBD control [115D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [115D] d-EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- d-EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 64
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970214
sample_title: d-EpOC from non-IBD control [115D]
source_name: d-EpOC from surgical sample of non-IBD control
characteristics: case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 64
EpOC from non-IBD control [117S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [117S] EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 52
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970215
sample_title: EpOC from non-IBD control [117S]
source_name: EpOC from surgical sample of non-IBD control
characteristics: case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 52
d-EpOC from non-IBD control [117D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [117D] d-EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- d-EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 52
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970216
sample_title: d-EpOC from non-IBD control [117D]
source_name: d-EpOC from surgical sample of non-IBD control
characteristics: case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 52
EpOC from non-IBD control [128S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [128S] EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 77
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970217
sample_title: EpOC from non-IBD control [128S]
source_name: EpOC from surgical sample of non-IBD control
characteristics: case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 77
d-EpOC from non-IBD control [128D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [128D] d-EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- d-EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 77
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970218
sample_title: d-EpOC from non-IBD control [128D]
source_name: d-EpOC from surgical sample of non-IBD control
characteristics: case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 77
EpOC from UC patient [129S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970219
sample_title: EpOC from UC patient [129S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37
d-EpOC from UC patient [129D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970220
sample_title: d-EpOC from UC patient [129D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37
EpOC from UC patient [134S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970221
sample_title: EpOC from UC patient [134S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40
d-EpOC from UC patient [134D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970222
sample_title: d-EpOC from UC patient [134D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40
EpOC from UC patient [136S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970223
sample_title: EpOC from UC patient [136S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50
d-EpOC from UC patient [136D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970224
sample_title: d-EpOC from UC patient [136D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50
EpOC from non-IBD control [149S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [149S] EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 56
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970225
sample_title: EpOC from non-IBD control [149S]
source_name: EpOC from surgical sample of non-IBD control
characteristics: case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 56
d-EpOC from non-IBD control [149D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from non-IBD control [149D] d-EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- d-EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 56
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970226
sample_title: d-EpOC from non-IBD control [149D]
source_name: d-EpOC from surgical sample of non-IBD control
characteristics: case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 56
EpOC from UC patient [153S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970227
sample_title: EpOC from UC patient [153S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43
d-EpOC from UC patient [153D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970228
sample_title: d-EpOC from UC patient [153D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43
EpOC from UC patient [154S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
- EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
Source metadata
- Source name
- EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970229
sample_title: EpOC from UC patient [154S]
source_name: EpOC from biopsy sample of UC patient
characteristics: case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41
d-EpOC from UC patient [154D]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
- d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
Source metadata
- Source name
- d-EpOC from biopsy sample of UC patient
- Characteristics
- case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970230
sample_title: d-EpOC from UC patient [154D]
source_name: d-EpOC from biopsy sample of UC patient
characteristics: case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41
EpOC from non-IBD control [155S]
Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- The reported value differs from the selected requirement.
- Supported by the indexed evidence.
- EpOC from non-IBD control [155S] EpOC from surgical sample of non-IBD control case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- EpOC from surgical sample of non-IBD control
- Characteristics
- case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM1970231
sample_title: EpOC from non-IBD control [155S]
source_name: EpOC from surgical sample of non-IBD control
characteristics: case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57