Matching samples

GSE75916 · Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative colitis

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (36)

GSM1970196

Excluded

EpOC from UC patient [80S]

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
        • EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
        • The reported value differs from the selected requirement.
        • Supported by the indexed evidence.
        • EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
      • specimen category excludes: Biofluid — Insufficient evidence
        • The required value is not reported.
        • EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
        • EpOC from UC patient [80S] EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
      Source metadata
      Source name
      EpOC from biopsy sample of UC patient
      Characteristics
      case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51
      Description
      Not reported
      Indexed organism evidence
      INFERRED · PARENT_INHERITED: Not reported
      Indexed assay evidence
      INFERRED · PARENT_INHERITED: Not reported
      Source
      GEO
      Original indexed metadata
      sample_accession: GSM1970196
      sample_title: EpOC from UC patient [80S]
      source_name: EpOC from biopsy sample of UC patient
      characteristics: case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51

      GSM1970197

      Excluded

      d-EpOC from UC patient [80D]

      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

      Requirements and decision evidence
      • organism: Homo sapiens — Insufficient evidence
        • The required value is not reported.
        • assay type: bulk RNA-seq — Insufficient evidence
          • The required value is not reported.
          • specimen category: Tissue or biopsy — Insufficient evidence
            • The required value is not reported.
            • d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
            • d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
            • The reported value differs from the selected requirement.
            • Supported by the indexed evidence.
            • d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
          • specimen category excludes: Biofluid — Insufficient evidence
            • The required value is not reported.
            • d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
            • d-EpOC from UC patient [80D] d-EpOC from biopsy sample of UC patient case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
          Source metadata
          Source name
          d-EpOC from biopsy sample of UC patient
          Characteristics
          case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51
          Description
          Not reported
          Indexed organism evidence
          INFERRED · PARENT_INHERITED: Not reported
          Indexed assay evidence
          INFERRED · PARENT_INHERITED: Not reported
          Source
          GEO
          Original indexed metadata
          sample_accession: GSM1970197
          sample_title: d-EpOC from UC patient [80D]
          source_name: d-EpOC from biopsy sample of UC patient
          characteristics: case_id: 80; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 16; age (years): 51

          GSM1970198

          Excluded

          EpOC from UC patient [88S]

          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

          Requirements and decision evidence
          • organism: Homo sapiens — Insufficient evidence
            • The required value is not reported.
            • assay type: bulk RNA-seq — Insufficient evidence
              • The required value is not reported.
              • specimen category: Tissue or biopsy — Insufficient evidence
                • The required value is not reported.
                • EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                • EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                • The reported value differs from the selected requirement.
                • Supported by the indexed evidence.
                • EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                • EpOC from UC patient [88S] EpOC from biopsy sample of UC patient case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
              Source metadata
              Source name
              EpOC from biopsy sample of UC patient
              Characteristics
              case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 38
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM1970198
              sample_title: EpOC from UC patient [88S]
              source_name: EpOC from biopsy sample of UC patient
              characteristics: case_id: 88; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 38

              GSM1970199

              Excluded

              EpOC from non-IBD control [89S]

              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                    • EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • Supported by the indexed evidence.
                    • EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                  • specimen category excludes: Biofluid — Insufficient evidence
                    • The required value is not reported.
                    • EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                    • EpOC from non-IBD control [89S] EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                  Source metadata
                  Source name
                  EpOC from biopsy sample of non-IBD control
                  Characteristics
                  case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 30
                  Description
                  Not reported
                  Indexed organism evidence
                  INFERRED · PARENT_INHERITED: Not reported
                  Indexed assay evidence
                  INFERRED · PARENT_INHERITED: Not reported
                  Source
                  GEO
                  Original indexed metadata
                  sample_accession: GSM1970199
                  sample_title: EpOC from non-IBD control [89S]
                  source_name: EpOC from biopsy sample of non-IBD control
                  characteristics: case_id: 89; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 30

                  GSM1970200

                  Excluded

                  d-EpOC from non-IBD control [89D]

                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                  Requirements and decision evidence
                  • organism: Homo sapiens — Insufficient evidence
                    • The required value is not reported.
                    • assay type: bulk RNA-seq — Insufficient evidence
                      • The required value is not reported.
                      • specimen category: Tissue or biopsy — Insufficient evidence
                        • The required value is not reported.
                        • d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                        • d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                        • The reported value differs from the selected requirement.
                        • Supported by the indexed evidence.
                        • d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                      • specimen category excludes: Biofluid — Insufficient evidence
                        • The required value is not reported.
                        • d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                        • d-EpOC from non-IBD control [89D] d-EpOC from biopsy sample of non-IBD control case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                      Source metadata
                      Source name
                      d-EpOC from biopsy sample of non-IBD control
                      Characteristics
                      case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 30
                      Description
                      Not reported
                      Indexed organism evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Indexed assay evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Source
                      GEO
                      Original indexed metadata
                      sample_accession: GSM1970200
                      sample_title: d-EpOC from non-IBD control [89D]
                      source_name: d-EpOC from biopsy sample of non-IBD control
                      characteristics: case_id: 89; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 30

                      GSM1970201

                      Excluded

                      EpOCs from non-IBD control [90S]

                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                      Requirements and decision evidence
                      • organism: Homo sapiens — Insufficient evidence
                        • The required value is not reported.
                        • assay type: bulk RNA-seq — Insufficient evidence
                          • The required value is not reported.
                          • specimen category: Tissue or biopsy — Insufficient evidence
                            • The required value is not reported.
                            • EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
                            • EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • Supported by the indexed evidence.
                            • EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
                            • EpOCs from non-IBD control [90S] EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (...
                          Source metadata
                          Source name
                          EpOC from biopsy sample of non-IBD control
                          Characteristics
                          case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (years): 53
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM1970201
                          sample_title: EpOCs from non-IBD control [90S]
                          source_name: EpOC from biopsy sample of non-IBD control
                          characteristics: case_id: 90; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: descending colon; age (years): 53

                          GSM1970202

                          Excluded

                          d-EpOC from non-IBD control [90D]

                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
                                • d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • Supported by the indexed evidence.
                                • d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
                              • specimen category excludes: Biofluid — Insufficient evidence
                                • The required value is not reported.
                                • d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
                                • d-EpOC from non-IBD control [90D] d-EpOC from biopsy sample of non-IBD control case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; ...
                              Source metadata
                              Source name
                              d-EpOC from biopsy sample of non-IBD control
                              Characteristics
                              case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; age (years): 53
                              Description
                              Not reported
                              Indexed organism evidence
                              INFERRED · PARENT_INHERITED: Not reported
                              Indexed assay evidence
                              INFERRED · PARENT_INHERITED: Not reported
                              Source
                              GEO
                              Original indexed metadata
                              sample_accession: GSM1970202
                              sample_title: d-EpOC from non-IBD control [90D]
                              source_name: d-EpOC from biopsy sample of non-IBD control
                              characteristics: case_id: 90; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: descending colon; age (years): 53

                              GSM1970203

                              Excluded

                              EpOC from UC patient [91S]

                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                              Requirements and decision evidence
                              • organism: Homo sapiens — Insufficient evidence
                                • The required value is not reported.
                                • assay type: bulk RNA-seq — Insufficient evidence
                                  • The required value is not reported.
                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                    • The required value is not reported.
                                    • EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                                    • EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                    • The reported value differs from the selected requirement.
                                    • Supported by the indexed evidence.
                                    • EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                                  • specimen category excludes: Biofluid — Insufficient evidence
                                    • The required value is not reported.
                                    • EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                                    • EpOC from UC patient [91S] EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; end...
                                  Source metadata
                                  Source name
                                  EpOC from biopsy sample of UC patient
                                  Characteristics
                                  case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54
                                  Description
                                  Not reported
                                  Indexed organism evidence
                                  INFERRED · PARENT_INHERITED: Not reported
                                  Indexed assay evidence
                                  INFERRED · PARENT_INHERITED: Not reported
                                  Source
                                  GEO
                                  Original indexed metadata
                                  sample_accession: GSM1970203
                                  sample_title: EpOC from UC patient [91S]
                                  source_name: EpOC from biopsy sample of UC patient
                                  characteristics: case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54

                                  GSM1970204

                                  Excluded

                                  d-EpOC from UC patient [91D]

                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                  Requirements and decision evidence
                                  • organism: Homo sapiens — Insufficient evidence
                                    • The required value is not reported.
                                    • assay type: bulk RNA-seq — Insufficient evidence
                                      • The required value is not reported.
                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                        • The required value is not reported.
                                        • d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
                                        • d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • Supported by the indexed evidence.
                                        • d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
                                        • d-EpOC from UC patient [91D] d-EpOC from biopsy sample of UC patient case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colo...
                                      Source metadata
                                      Source name
                                      d-EpOC from biopsy sample of UC patient
                                      Characteristics
                                      case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM1970204
                                      sample_title: d-EpOC from UC patient [91D]
                                      source_name: d-EpOC from biopsy sample of UC patient
                                      characteristics: case_id: 91; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 11; age (years): 54

                                      GSM1970205

                                      Excluded

                                      EpOC from non-IBD control [92S]

                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                                            • EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • Supported by the indexed evidence.
                                            • EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                                          • specimen category excludes: Biofluid — Insufficient evidence
                                            • The required value is not reported.
                                            • EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                                            • EpOC from non-IBD control [92S] EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (year...
                                          Source metadata
                                          Source name
                                          EpOC from biopsy sample of non-IBD control
                                          Characteristics
                                          case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 31
                                          Description
                                          Not reported
                                          Indexed organism evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Indexed assay evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Source
                                          GEO
                                          Original indexed metadata
                                          sample_accession: GSM1970205
                                          sample_title: EpOC from non-IBD control [92S]
                                          source_name: EpOC from biopsy sample of non-IBD control
                                          characteristics: case_id: 92; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 31

                                          GSM1970206

                                          Excluded

                                          d-EpOC from non-IBD control [92D]

                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                          Requirements and decision evidence
                                          • organism: Homo sapiens — Insufficient evidence
                                            • The required value is not reported.
                                            • assay type: bulk RNA-seq — Insufficient evidence
                                              • The required value is not reported.
                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                • The required value is not reported.
                                                • d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                                                • d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                • The reported value differs from the selected requirement.
                                                • Supported by the indexed evidence.
                                                • d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                • The required value is not reported.
                                                • d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                                                • d-EpOC from non-IBD control [92D] d-EpOC from biopsy sample of non-IBD control case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age...
                                              Source metadata
                                              Source name
                                              d-EpOC from biopsy sample of non-IBD control
                                              Characteristics
                                              case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 31
                                              Description
                                              Not reported
                                              Indexed organism evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Indexed assay evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Source
                                              GEO
                                              Original indexed metadata
                                              sample_accession: GSM1970206
                                              sample_title: d-EpOC from non-IBD control [92D]
                                              source_name: d-EpOC from biopsy sample of non-IBD control
                                              characteristics: case_id: 92; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 31

                                              GSM1970207

                                              Excluded

                                              EpOC from non-IBD control [94S]

                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                              Requirements and decision evidence
                                              • organism: Homo sapiens — Insufficient evidence
                                                • The required value is not reported.
                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                  • The required value is not reported.
                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                    • The required value is not reported.
                                                    • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                      • The reported value differs from the selected requirement.
                                                      • Supported by the indexed evidence.
                                                      • EpOC from non-IBD control [94S] EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                    • specimen category excludes: Biofluid — Meets requirement
                                                      • Supported by the indexed evidence.
                                                      Source metadata
                                                      Source name
                                                      EpOC from surgical sample of non-IBD control
                                                      Characteristics
                                                      case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 48
                                                      Description
                                                      Not reported
                                                      Indexed organism evidence
                                                      INFERRED · PARENT_INHERITED: Not reported
                                                      Indexed assay evidence
                                                      INFERRED · PARENT_INHERITED: Not reported
                                                      Source
                                                      GEO
                                                      Original indexed metadata
                                                      sample_accession: GSM1970207
                                                      sample_title: EpOC from non-IBD control [94S]
                                                      source_name: EpOC from surgical sample of non-IBD control
                                                      characteristics: case_id: 94; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 48

                                                      GSM1970208

                                                      Excluded

                                                      d-EpOC from non-IBD control [94D]

                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                      Requirements and decision evidence
                                                      • organism: Homo sapiens — Insufficient evidence
                                                        • The required value is not reported.
                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                          • The required value is not reported.
                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                            • The required value is not reported.
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                              • The reported value differs from the selected requirement.
                                                              • Supported by the indexed evidence.
                                                              • d-EpOC from non-IBD control [94D] d-EpOC from surgical sample of non-IBD control case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                            • specimen category excludes: Biofluid — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              Source metadata
                                                              Source name
                                                              d-EpOC from surgical sample of non-IBD control
                                                              Characteristics
                                                              case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 48
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM1970208
                                                              sample_title: d-EpOC from non-IBD control [94D]
                                                              source_name: d-EpOC from surgical sample of non-IBD control
                                                              characteristics: case_id: 94; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 48

                                                              GSM1970209

                                                              Excluded

                                                              EpOC from non-IBD control [112S]

                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                    • EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • Supported by the indexed evidence.
                                                                    • EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                    • EpOC from non-IBD control [112S] EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                  Source metadata
                                                                  Source name
                                                                  EpOC from biopsy sample of non-IBD control
                                                                  Characteristics
                                                                  case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 66
                                                                  Description
                                                                  Not reported
                                                                  Indexed organism evidence
                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                  Indexed assay evidence
                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                  Source
                                                                  GEO
                                                                  Original indexed metadata
                                                                  sample_accession: GSM1970209
                                                                  sample_title: EpOC from non-IBD control [112S]
                                                                  source_name: EpOC from biopsy sample of non-IBD control
                                                                  characteristics: case_id: 112; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 66

                                                                  GSM1970210

                                                                  Excluded

                                                                  d-EpOC from non-IBD control [112D]

                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                  Requirements and decision evidence
                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                        • d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                        • The reported value differs from the selected requirement.
                                                                        • Supported by the indexed evidence.
                                                                        • d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                        • d-EpOC from non-IBD control [112D] d-EpOC from biopsy sample of non-IBD control case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                      Source metadata
                                                                      Source name
                                                                      d-EpOC from biopsy sample of non-IBD control
                                                                      Characteristics
                                                                      case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 66
                                                                      Description
                                                                      Not reported
                                                                      Indexed organism evidence
                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                      Indexed assay evidence
                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                      Source
                                                                      GEO
                                                                      Original indexed metadata
                                                                      sample_accession: GSM1970210
                                                                      sample_title: d-EpOC from non-IBD control [112D]
                                                                      source_name: d-EpOC from biopsy sample of non-IBD control
                                                                      characteristics: case_id: 112; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 66

                                                                      GSM1970211

                                                                      Excluded

                                                                      EpOC from non-IBD control [113S]

                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                      Requirements and decision evidence
                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                            • EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • Supported by the indexed evidence.
                                                                            • EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                            • EpOC from non-IBD control [113S] EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (ye...
                                                                          Source metadata
                                                                          Source name
                                                                          EpOC from biopsy sample of non-IBD control
                                                                          Characteristics
                                                                          case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM1970211
                                                                          sample_title: EpOC from non-IBD control [113S]
                                                                          source_name: EpOC from biopsy sample of non-IBD control
                                                                          characteristics: case_id: 113; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57

                                                                          GSM1970212

                                                                          Excluded

                                                                          d-EpOC from non-IBD control [113D]

                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                                • d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • Supported by the indexed evidence.
                                                                                • d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                                • d-EpOC from non-IBD control [113D] d-EpOC from biopsy sample of non-IBD control case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; a...
                                                                              Source metadata
                                                                              Source name
                                                                              d-EpOC from biopsy sample of non-IBD control
                                                                              Characteristics
                                                                              case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 57
                                                                              Description
                                                                              Not reported
                                                                              Indexed organism evidence
                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                              Indexed assay evidence
                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                              Source
                                                                              GEO
                                                                              Original indexed metadata
                                                                              sample_accession: GSM1970212
                                                                              sample_title: d-EpOC from non-IBD control [113D]
                                                                              source_name: d-EpOC from biopsy sample of non-IBD control
                                                                              characteristics: case_id: 113; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 57

                                                                              GSM1970213

                                                                              Excluded

                                                                              EpOC from non-IBD control [115S]

                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                              Requirements and decision evidence
                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                      • The reported value differs from the selected requirement.
                                                                                      • Supported by the indexed evidence.
                                                                                      • EpOC from non-IBD control [115S] EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      Source metadata
                                                                                      Source name
                                                                                      EpOC from surgical sample of non-IBD control
                                                                                      Characteristics
                                                                                      case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 64
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM1970213
                                                                                      sample_title: EpOC from non-IBD control [115S]
                                                                                      source_name: EpOC from surgical sample of non-IBD control
                                                                                      characteristics: case_id: 115; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 64

                                                                                      GSM1970214

                                                                                      Excluded

                                                                                      d-EpOC from non-IBD control [115D]

                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                              • The reported value differs from the selected requirement.
                                                                                              • Supported by the indexed evidence.
                                                                                              • d-EpOC from non-IBD control [115D] d-EpOC from surgical sample of non-IBD control case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                              • Supported by the indexed evidence.
                                                                                              Source metadata
                                                                                              Source name
                                                                                              d-EpOC from surgical sample of non-IBD control
                                                                                              Characteristics
                                                                                              case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 64
                                                                                              Description
                                                                                              Not reported
                                                                                              Indexed organism evidence
                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                              Indexed assay evidence
                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                              Source
                                                                                              GEO
                                                                                              Original indexed metadata
                                                                                              sample_accession: GSM1970214
                                                                                              sample_title: d-EpOC from non-IBD control [115D]
                                                                                              source_name: d-EpOC from surgical sample of non-IBD control
                                                                                              characteristics: case_id: 115; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 64

                                                                                              GSM1970215

                                                                                              Excluded

                                                                                              EpOC from non-IBD control [117S]

                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                              Requirements and decision evidence
                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                      • The reported value differs from the selected requirement.
                                                                                                      • Supported by the indexed evidence.
                                                                                                      • EpOC from non-IBD control [117S] EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                      • Supported by the indexed evidence.
                                                                                                      Source metadata
                                                                                                      Source name
                                                                                                      EpOC from surgical sample of non-IBD control
                                                                                                      Characteristics
                                                                                                      case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 52
                                                                                                      Description
                                                                                                      Not reported
                                                                                                      Indexed organism evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Indexed assay evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Source
                                                                                                      GEO
                                                                                                      Original indexed metadata
                                                                                                      sample_accession: GSM1970215
                                                                                                      sample_title: EpOC from non-IBD control [117S]
                                                                                                      source_name: EpOC from surgical sample of non-IBD control
                                                                                                      characteristics: case_id: 117; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 52

                                                                                                      GSM1970216

                                                                                                      Excluded

                                                                                                      d-EpOC from non-IBD control [117D]

                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                      Requirements and decision evidence
                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                              • The reported value differs from the selected requirement.
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • d-EpOC from non-IBD control [117D] d-EpOC from surgical sample of non-IBD control case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              d-EpOC from surgical sample of non-IBD control
                                                                                                              Characteristics
                                                                                                              case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 52
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM1970216
                                                                                                              sample_title: d-EpOC from non-IBD control [117D]
                                                                                                              source_name: d-EpOC from surgical sample of non-IBD control
                                                                                                              characteristics: case_id: 117; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 52

                                                                                                              GSM1970217

                                                                                                              Excluded

                                                                                                              EpOC from non-IBD control [128S]

                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                      • Supported by the indexed evidence.
                                                                                                                      • EpOC from non-IBD control [128S] EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                      • Supported by the indexed evidence.
                                                                                                                      Source metadata
                                                                                                                      Source name
                                                                                                                      EpOC from surgical sample of non-IBD control
                                                                                                                      Characteristics
                                                                                                                      case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 77
                                                                                                                      Description
                                                                                                                      Not reported
                                                                                                                      Indexed organism evidence
                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                      Indexed assay evidence
                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                      Source
                                                                                                                      GEO
                                                                                                                      Original indexed metadata
                                                                                                                      sample_accession: GSM1970217
                                                                                                                      sample_title: EpOC from non-IBD control [128S]
                                                                                                                      source_name: EpOC from surgical sample of non-IBD control
                                                                                                                      characteristics: case_id: 128; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 77

                                                                                                                      GSM1970218

                                                                                                                      Excluded

                                                                                                                      d-EpOC from non-IBD control [128D]

                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                      Requirements and decision evidence
                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                              • Supported by the indexed evidence.
                                                                                                                              • d-EpOC from non-IBD control [128D] d-EpOC from surgical sample of non-IBD control case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                              • Supported by the indexed evidence.
                                                                                                                              Source metadata
                                                                                                                              Source name
                                                                                                                              d-EpOC from surgical sample of non-IBD control
                                                                                                                              Characteristics
                                                                                                                              case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 77
                                                                                                                              Description
                                                                                                                              Not reported
                                                                                                                              Indexed organism evidence
                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                              Indexed assay evidence
                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                              Source
                                                                                                                              GEO
                                                                                                                              Original indexed metadata
                                                                                                                              sample_accession: GSM1970218
                                                                                                                              sample_title: d-EpOC from non-IBD control [128D]
                                                                                                                              source_name: d-EpOC from surgical sample of non-IBD control
                                                                                                                              characteristics: case_id: 128; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 77

                                                                                                                              GSM1970219

                                                                                                                              Excluded

                                                                                                                              EpOC from UC patient [129S]

                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                              Requirements and decision evidence
                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                    • EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                    • EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                    • EpOC from UC patient [129S] EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                  Source metadata
                                                                                                                                  Source name
                                                                                                                                  EpOC from biopsy sample of UC patient
                                                                                                                                  Characteristics
                                                                                                                                  case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37
                                                                                                                                  Description
                                                                                                                                  Not reported
                                                                                                                                  Indexed organism evidence
                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                  Indexed assay evidence
                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                  Source
                                                                                                                                  GEO
                                                                                                                                  Original indexed metadata
                                                                                                                                  sample_accession: GSM1970219
                                                                                                                                  sample_title: EpOC from UC patient [129S]
                                                                                                                                  source_name: EpOC from biopsy sample of UC patient
                                                                                                                                  characteristics: case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37

                                                                                                                                  GSM1970220

                                                                                                                                  Excluded

                                                                                                                                  d-EpOC from UC patient [129D]

                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                  Requirements and decision evidence
                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                        • d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                        • d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                        • d-EpOC from UC patient [129D] d-EpOC from biopsy sample of UC patient case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      d-EpOC from biopsy sample of UC patient
                                                                                                                                      Characteristics
                                                                                                                                      case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM1970220
                                                                                                                                      sample_title: d-EpOC from UC patient [129D]
                                                                                                                                      source_name: d-EpOC from biopsy sample of UC patient
                                                                                                                                      characteristics: case_id: 129; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 18; age (years): 37

                                                                                                                                      GSM1970221

                                                                                                                                      Excluded

                                                                                                                                      EpOC from UC patient [134S]

                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                            • EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                            • EpOC from UC patient [134S] EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                          Source metadata
                                                                                                                                          Source name
                                                                                                                                          EpOC from biopsy sample of UC patient
                                                                                                                                          Characteristics
                                                                                                                                          case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40
                                                                                                                                          Description
                                                                                                                                          Not reported
                                                                                                                                          Indexed organism evidence
                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                          Indexed assay evidence
                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                          Source
                                                                                                                                          GEO
                                                                                                                                          Original indexed metadata
                                                                                                                                          sample_accession: GSM1970221
                                                                                                                                          sample_title: EpOC from UC patient [134S]
                                                                                                                                          source_name: EpOC from biopsy sample of UC patient
                                                                                                                                          characteristics: case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40

                                                                                                                                          GSM1970222

                                                                                                                                          Excluded

                                                                                                                                          d-EpOC from UC patient [134D]

                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                          Requirements and decision evidence
                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                • d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                • d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                • d-EpOC from UC patient [134D] d-EpOC from biopsy sample of UC patient case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                              Source metadata
                                                                                                                                              Source name
                                                                                                                                              d-EpOC from biopsy sample of UC patient
                                                                                                                                              Characteristics
                                                                                                                                              case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40
                                                                                                                                              Description
                                                                                                                                              Not reported
                                                                                                                                              Indexed organism evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Indexed assay evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Source
                                                                                                                                              GEO
                                                                                                                                              Original indexed metadata
                                                                                                                                              sample_accession: GSM1970222
                                                                                                                                              sample_title: d-EpOC from UC patient [134D]
                                                                                                                                              source_name: d-EpOC from biopsy sample of UC patient
                                                                                                                                              characteristics: case_id: 134; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 17; age (years): 40

                                                                                                                                              GSM1970223

                                                                                                                                              Excluded

                                                                                                                                              EpOC from UC patient [136S]

                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                              Requirements and decision evidence
                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                    • EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                    • EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                    • EpOC from UC patient [136S] EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  EpOC from biopsy sample of UC patient
                                                                                                                                                  Characteristics
                                                                                                                                                  case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM1970223
                                                                                                                                                  sample_title: EpOC from UC patient [136S]
                                                                                                                                                  source_name: EpOC from biopsy sample of UC patient
                                                                                                                                                  characteristics: case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50

                                                                                                                                                  GSM1970224

                                                                                                                                                  Excluded

                                                                                                                                                  d-EpOC from UC patient [136D]

                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                        • d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                        • d-EpOC from UC patient [136D] d-EpOC from biopsy sample of UC patient case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                      Source metadata
                                                                                                                                                      Source name
                                                                                                                                                      d-EpOC from biopsy sample of UC patient
                                                                                                                                                      Characteristics
                                                                                                                                                      case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50
                                                                                                                                                      Description
                                                                                                                                                      Not reported
                                                                                                                                                      Indexed organism evidence
                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                      Indexed assay evidence
                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                      Source
                                                                                                                                                      GEO
                                                                                                                                                      Original indexed metadata
                                                                                                                                                      sample_accession: GSM1970224
                                                                                                                                                      sample_title: d-EpOC from UC patient [136D]
                                                                                                                                                      source_name: d-EpOC from biopsy sample of UC patient
                                                                                                                                                      characteristics: case_id: 136; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 17; age (years): 50

                                                                                                                                                      GSM1970225

                                                                                                                                                      Excluded

                                                                                                                                                      EpOC from non-IBD control [149S]

                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • EpOC from non-IBD control [149S] EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              EpOC from surgical sample of non-IBD control
                                                                                                                                                              Characteristics
                                                                                                                                                              case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 56
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM1970225
                                                                                                                                                              sample_title: EpOC from non-IBD control [149S]
                                                                                                                                                              source_name: EpOC from surgical sample of non-IBD control
                                                                                                                                                              characteristics: case_id: 149; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 56

                                                                                                                                                              GSM1970226

                                                                                                                                                              Excluded

                                                                                                                                                              d-EpOC from non-IBD control [149D]

                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                      • d-EpOC from non-IBD control [149D] d-EpOC from surgical sample of non-IBD control case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon;...
                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                      Source metadata
                                                                                                                                                                      Source name
                                                                                                                                                                      d-EpOC from surgical sample of non-IBD control
                                                                                                                                                                      Characteristics
                                                                                                                                                                      case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 56
                                                                                                                                                                      Description
                                                                                                                                                                      Not reported
                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                      Source
                                                                                                                                                                      GEO
                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                      sample_accession: GSM1970226
                                                                                                                                                                      sample_title: d-EpOC from non-IBD control [149D]
                                                                                                                                                                      source_name: d-EpOC from surgical sample of non-IBD control
                                                                                                                                                                      characteristics: case_id: 149; case_phenotype: non-IBD control; organoid_culture: d-EpOC; tissue: sigmoid colon; age (years): 56

                                                                                                                                                                      GSM1970227

                                                                                                                                                                      Excluded

                                                                                                                                                                      EpOC from UC patient [153S]

                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                            • EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                            • EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                            • EpOC from UC patient [153S] EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          EpOC from biopsy sample of UC patient
                                                                                                                                                                          Characteristics
                                                                                                                                                                          case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM1970227
                                                                                                                                                                          sample_title: EpOC from UC patient [153S]
                                                                                                                                                                          source_name: EpOC from biopsy sample of UC patient
                                                                                                                                                                          characteristics: case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43

                                                                                                                                                                          GSM1970228

                                                                                                                                                                          Excluded

                                                                                                                                                                          d-EpOC from UC patient [153D]

                                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                • d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                • d-EpOC from UC patient [153D] d-EpOC from biopsy sample of UC patient case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                              Source metadata
                                                                                                                                                                              Source name
                                                                                                                                                                              d-EpOC from biopsy sample of UC patient
                                                                                                                                                                              Characteristics
                                                                                                                                                                              case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43
                                                                                                                                                                              Description
                                                                                                                                                                              Not reported
                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                              Source
                                                                                                                                                                              GEO
                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                              sample_accession: GSM1970228
                                                                                                                                                                              sample_title: d-EpOC from UC patient [153D]
                                                                                                                                                                              source_name: d-EpOC from biopsy sample of UC patient
                                                                                                                                                                              characteristics: case_id: 153; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 0; uc_evolution_time (years): 8; age (years): 43

                                                                                                                                                                              GSM1970229

                                                                                                                                                                              Excluded

                                                                                                                                                                              EpOC from UC patient [154S]

                                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                                    • EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                    • EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                                    • EpOC from UC patient [154S] EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; e...
                                                                                                                                                                                  Source metadata
                                                                                                                                                                                  Source name
                                                                                                                                                                                  EpOC from biopsy sample of UC patient
                                                                                                                                                                                  Characteristics
                                                                                                                                                                                  case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41
                                                                                                                                                                                  Description
                                                                                                                                                                                  Not reported
                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                  Source
                                                                                                                                                                                  GEO
                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                  sample_accession: GSM1970229
                                                                                                                                                                                  sample_title: EpOC from UC patient [154S]
                                                                                                                                                                                  source_name: EpOC from biopsy sample of UC patient
                                                                                                                                                                                  characteristics: case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41

                                                                                                                                                                                  GSM1970230

                                                                                                                                                                                  Excluded

                                                                                                                                                                                  d-EpOC from UC patient [154D]

                                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                        • d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                        • d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                        • d-EpOC from UC patient [154D] d-EpOC from biopsy sample of UC patient case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid co...
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      d-EpOC from biopsy sample of UC patient
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM1970230
                                                                                                                                                                                      sample_title: d-EpOC from UC patient [154D]
                                                                                                                                                                                      source_name: d-EpOC from biopsy sample of UC patient
                                                                                                                                                                                      characteristics: case_id: 154; case_phenotype: ulcerative colitis (UC) patient; organoid_culture: d-EpOC; tissue: sigmoid colon; endoscopic_mayo_score: 1; uc_evolution_time (years): 8; age (years): 41

                                                                                                                                                                                      GSM1970231

                                                                                                                                                                                      Excluded

                                                                                                                                                                                      EpOC from non-IBD control [155S]

                                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                              • EpOC from non-IBD control [155S] EpOC from surgical sample of non-IBD control case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (...
                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                              Source metadata
                                                                                                                                                                                              Source name
                                                                                                                                                                                              EpOC from surgical sample of non-IBD control
                                                                                                                                                                                              Characteristics
                                                                                                                                                                                              case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57
                                                                                                                                                                                              Description
                                                                                                                                                                                              Not reported
                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                              Source
                                                                                                                                                                                              GEO
                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                              sample_accession: GSM1970231
                                                                                                                                                                                              sample_title: EpOC from non-IBD control [155S]
                                                                                                                                                                                              source_name: EpOC from surgical sample of non-IBD control
                                                                                                                                                                                              characteristics: case_id: 155; case_phenotype: non-IBD control; organoid_culture: EpOC; tissue: sigmoid colon; age (years): 57