Matching samples

GSE7741 · Expression data of HCV-associated advance disease state

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Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (3)

GSM182149

Excluded

HCV infected liver _Fibrosis Stage 0_pool1

Excluded by the study grouping rules. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: Pooled sample metadata detected.

Requirements and decision evidence
  • Case: organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • Case: assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • Case: specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
        • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
      • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • Case: specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
          • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
        • Control: organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • Control: assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • Control: specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
              • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
            • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • Control: specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
                • HCV infected liver _Fibrosis Stage 0_pool1 Pooled early fibrosis Stage 0 of chronic HCV infected liver Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liv...
              Source metadata
              Source name
              Pooled early fibrosis Stage 0 of chronic HCV infected liver
              Characteristics
              Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liver tissues with chronic hepatitis C, fibrosis stage 0, grade of inflammation 0-1.
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM182149
sample_title: HCV infected liver _Fibrosis Stage 0_pool1
source_name: Pooled early fibrosis Stage 0 of chronic HCV infected liver
characteristics: Tissue: Liver biopsy tissue; Disease stage: A pooled RNA sample from 4 liver tissues with chronic hepatitis C, fibrosis stage 0, grade of inflammation 0-1.

              GSM182150

              Excluded

              Non-viral hepatic liver_pool1

              Excluded by the study grouping rules. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: Pooled sample metadata detected.

              Requirements and decision evidence
              • Case: organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • Case: assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • Case: specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                    • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • Case: specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                      • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                    • Control: organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • Control: specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                          • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • Control: specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                            • Non-viral hepatic liver_pool1 Pooled Non-viral hepatitis Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis s...
                          Source metadata
                          Source name
                          Pooled Non-viral hepatitis
                          Characteristics
                          Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis stage 3, grade of inflammation II; Male to female ratio: 1/2
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM182150
sample_title: Non-viral hepatic liver_pool1
source_name: Pooled Non-viral hepatitis
characteristics: Tissue: Liver biopsy tissue; Disease state: A pooled RNA sample from 3 liver tissues with non-viral hepatitis fibrosis stage 3, grade of inflammation II; Male to female ratio: 1/2

                          GSM182151

                          Excluded

                          HCV infected liver_Advance Fibrosis pool

                          Excluded by the study grouping rules. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: Pooled sample metadata detected.

                          Requirements and decision evidence
                          • Case: organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                  • Supported by the indexed evidence.
                                  • Case: specimen category excludes: Biofluid — Meets requirement
                                    • Supported by the indexed evidence.
                                    • Control: organism: Homo sapiens — Insufficient evidence
                                      • The required value is not reported.
                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                        • The required value is not reported.
                                        • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                          • The required value is not reported.
                                          • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • Control: specimen category excludes: Biofluid — Meets requirement
                                              • Supported by the indexed evidence.
                                              Source metadata
                                              Source name
                                              Pooled advance fibrosis stage III-IV chronic HCV infected liver
                                              Characteristics
                                              Tissue: Liver tissues; Disease state: A pooled RNA sample from 4 liver tissues with chronic hepatitis C fibrosis stage III and IV, grade of inflammation III-IV; Male to female ratio: 1/3
                                              Description
                                              Not reported
                                              Indexed organism evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Indexed assay evidence
                                              INFERRED · PARENT_INHERITED: Not reported
                                              Source
                                              GEO
                                              Original indexed metadata
                                              sample_accession: GSM182151
sample_title: HCV infected liver_Advance Fibrosis pool
source_name: Pooled advance fibrosis stage III-IV chronic HCV infected liver
characteristics: Tissue: Liver tissues; Disease state: A pooled RNA sample from 4 liver tissues with chronic hepatitis C fibrosis stage III and IV, grade of inflammation III-IV; Male to female ratio: 1/3