GSE81266

Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

71 case / 2 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 77 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Huang Y, Dalal S, Chang EB
Contact name: Yong Huang
Submission date: 2016-05-10
Last update: 2019-05-15
Organization: University of Viginia
Department: Medicine
Public date: 2016-05-11
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA321131

Summary

UC pouchitis is a potential model of UC. We prospectively examined the pouch transcriptomes of UC and familial adenomatous polyposis (FAP) IPAA patients to unveil molecular mechanisms of UC pouchitis susceptibility. Methods: Total RNA was isolated using the AllPrep DNA/RNA Mini Kit (QIAGEN, Cat No. 8020). RNA quality was evaluated using Bioanalyzer (Agilent, Santa Clara, CA). All RNA samples displayed RNA Integrity Number (RIN) >7. RNAseq including cDNA library preparation was processed at the Genomics Core Facility of University of Chicago (https://fgf.uchicago.edu/). Total RNA in the amount of 100-500μg per sample was depleted of ribosomal RNA using the Ribo-Zero kit (Epicentre, Madison, WI). The directional (first strand) cDNA libraries were prepared following the guide of TruSeq Stranded Total RNA Sample Preparation kit. Results: Unlike FAP patients, UC subjects exhibited a large set of differentially expressed genes (DEGs) between pouch and pre-pouch mucosa as early as 4 months after pouch functionalization. Functional pathway analysis of DEGs in UC pouch revealed: (1) Gain of colon-associated gene expressions and loss of ileum associated gene expressions, (2) enhanced state of immune/inflammatory response, and (3) suppressed xenobiotic, lipid, and bile acid metabolic pathways. These changes were corroborated upon reanalysis of a published larger cross-sectional study of UC and FAP patients. Moreover, >70% of DEGs mapped to published IBD and normal colonic microarray datasets displayed directional changes consistent with active UC, but not Crohn's disease. Conclusions: UC patients exhibit a unique transcriptomic response to ileal pouch creation that can be observed well before disease. The transcriptome alterations provide insights into pouchitis

Overall design

Seventeen patients with UC and four patients with FAP were recruited at the University of Chicago and the Mayo Clinic Rochester. All patients underwent a total proctocolectomy with ileal pouch anal anastomosis (IPAA) as a standard of care. UC patients underwent a pouchoscopy for biopsy of the pre-pouch ileum and pouch at 4 months, 8 months, and 12 months after ileostomy closure. None of these patients had pouchitis.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 77 GSM samples	Primary source
recount3	Trusted source evidence for processed count availability. recount3 project ID srp074739	Available
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication Early Transcriptomic Changes in the Ileal Pouch Provide Insight into the Molecular Pathogenesis of Pouchitis and Ulcerative Colitis. Inflammatory bowel diseases, 2017 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

4 samples are still unassigned.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 4 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Ulcerative colitis 71 samples
Likely control group Healthy control 2 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: recount3 reports trusted processed count availability.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 28221248.
Publication context: Early Transcriptomic Changes in the Ileal Pouch Provide Insight into the Molecular Pathogenesis of Pouchitis and Ulcerative Colitis.. Inflammatory bowel diseases, 2017. PMID 28221248. DOI 10.1097/MIB.0000000000001027.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

230 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source ileum GSM2147872 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147873 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147874 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147875 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147876 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147877 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147878 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147879 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147880 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147881 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147882 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147883 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147884 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147885 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147886 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147887 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147888 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147889 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147890 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147891 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147892 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147893 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147894 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147895 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147896 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147897 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147898 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147899 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147900 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147901 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147902 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147903 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147904 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147905 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147906 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147907 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147908 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147909 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147910 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147911 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147912 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147913 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147914 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147915 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147916 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147917 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147918 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147919 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147920 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147921 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147922 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147923 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147924 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147925 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147926 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147927 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147928 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147929 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147930 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147931 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147932 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147933 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147934 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147935 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147936 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147937 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147938 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147939 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147940 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147941 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147942 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147943 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147944 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147945 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileal tissue: Ileal pouch sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2147946 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Prepouch ileum sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... keyword match keyword match: microarray

disease Crohn's disease GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease inflammatory bowel disease GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... controlled vocabulary controlled vocabulary disease match: ibd

disease ulcerative colitis GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147872 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC1 P500.5 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147873 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC2 P500.5 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147874 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC3 P500.8 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147875 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC4 P500.8 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147876 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC5 P500.12 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147877 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC6 P500.12 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147878 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC7 P502.4 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147879 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC8 P502.4 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147880 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC9 P502.8 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147881 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC10 P502.8 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147882 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC11 P502.12 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147883 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC12 P502.12 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147884 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC13 P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147885 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC14 P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147886 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC15 P603 patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147887 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC16 P603 patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147888 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH10 P501.5 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147889 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH11 P501.6 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147890 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH12 P501.7 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147891 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH13 P503.5 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147892 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH14 P503.6 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147893 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH15 P503.7 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147894 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH17 P503.6 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147895 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH18 P503.7 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147896 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH19 P505.6 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147897 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH1 P427.5 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147898 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH20 P505.7 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147899 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH21 P505.5 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147900 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH22 P505.6 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147901 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH23 P505.7 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147902 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH24 P506.5 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147903 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH26 P506.7 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147904 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH27 P506.5 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147905 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH28 P506.6 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147906 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH29 P506.7 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147907 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH2 P427.6 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147908 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH30 P507.5 patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147909 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH32 P507.5 patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147910 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH34 P508.5 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147911 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH35 P508.6 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147912 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH36 P508.5 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147913 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH37 P508.6 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147914 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH38 P509.5 patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147915 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH39 P509.5 patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147916 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH3 P427.7 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147917 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH40 P510.5 patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147918 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH41 P510.5 patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147919 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH42 P511.5 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147920 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH43 P511.6 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147921 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH44 P511.5 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147922 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH45 P511.6 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147923 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH47 P512.5 patient: P512; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 42; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147924 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH48 P513.5 patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147925 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH49 P513.5 patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147926 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH4 P427.5 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147927 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH50 P600.5 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147928 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH51 P600.6 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147929 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH52 P600.5 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147930 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH53 P600.6 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147931 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH56 P604.6 patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147932 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH58 P604.6 patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147933 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH59 P604.7 patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147934 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH60 P607.5 patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147935 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH61 P607.5 patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147936 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH6 P427.7 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147937 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH7 P501.5 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147938 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH8 P501.6 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147939 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis NH9 P501.7 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147944 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC11b P502.12 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147945 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC13b P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2147946 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis EC14b P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary disease match: ulcerative colitis

organism Homo sapiens GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... keyword match keyword match: homo sapiens

sample_type normal tissue GSM2147947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NH64 Ileum1 patient: IL1; diagnosis: Normal; prognosis: Healthy; tissue: Ile; biopsytime: NA; age: missing; Sex: missing; ethnicity: Caucasian controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2147948 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal NH65 Ileum2 patient: IL2; diagnosis: Normal; prognosis: Healthy; tissue: Ile; biopsytime: NA; age: missing; Sex: missing; ethnicity: Caucasian controlled vocabulary controlled vocabulary sample type match: normal

tissue colon GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSE81266 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum dataset_accession: GSE81266 dataset_title: Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis organism: Homo sapiens assay_type: mic... controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147872 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC1 P500.5 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147873 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC2 P500.5 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147874 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC3 P500.8 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147875 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC4 P500.8 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147876 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC5 P500.12 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147877 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC6 P500.12 patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147878 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC7 P502.4 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147879 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC8 P502.4 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147880 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC9 P502.8 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147881 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC10 P502.8 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147882 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC11 P502.12 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147883 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC12 P502.12 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147884 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC13 P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147885 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC14 P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147886 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC15 P603 patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147887 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC16 P603 patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147888 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH10 P501.5 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147889 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH11 P501.6 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147890 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH12 P501.7 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147891 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH13 P503.5 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147892 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH14 P503.6 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147893 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH15 P503.7 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147894 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH17 P503.6 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147895 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH18 P503.7 patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147896 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH19 P505.6 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147897 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH1 P427.5 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147898 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH20 P505.7 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147899 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH21 P505.5 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147900 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH22 P505.6 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147901 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH23 P505.7 patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147902 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH24 P506.5 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147903 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH26 P506.7 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147904 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH27 P506.5 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147905 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH28 P506.6 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147906 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH29 P506.7 patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147907 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH2 P427.6 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147908 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH30 P507.5 patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147909 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH32 P507.5 patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147910 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH34 P508.5 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147911 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH35 P508.6 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147912 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH36 P508.5 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147913 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH37 P508.6 patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147914 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH38 P509.5 patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147915 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH39 P509.5 patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147916 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH3 P427.7 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147917 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH40 P510.5 patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147918 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH41 P510.5 patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147919 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH42 P511.5 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147920 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH43 P511.6 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147921 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH44 P511.5 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147922 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH45 P511.6 patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147923 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH47 P512.5 patient: P512; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 42; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147924 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH48 P513.5 patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147925 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH49 P513.5 patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147926 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH4 P427.5 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147927 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH50 P600.5 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147928 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH51 P600.6 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147929 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH52 P600.5 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147930 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH53 P600.6 patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147931 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH56 P604.6 patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147932 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH58 P604.6 patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147933 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH59 P604.7 patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147934 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH60 P607.5 patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147935 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH61 P607.5 patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147936 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH6 P427.7 patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147937 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH7 P501.5 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147938 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH8 P501.6 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147939 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH9 P501.7 patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147940 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH62 P701 patient: P701; diagnosis: FAP; prognosis: FAP; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: missing; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147941 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH63 P701 patient: P701; diagnosis: FAP; prognosis: FAP; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: missing; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147942 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum NH54 P601 patient: P601; diagnosis: FAP; prognosis: FAP; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2147943 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal NH55 P601 patient: P601; diagnosis: FAP; prognosis: FAP; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147944 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC11b P502.12 patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147945 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileal EC13b P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileal

tissue intestine GSM2147946 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum EC14b P602 patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian controlled vocabulary controlled vocabulary tissue match: ileum

Sample Group Preview

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Study totals: Case 71 | Control 2 | Unassigned 4 | Excluded 0 | Ambiguous 0 showing 56 of 77 preview rows

Group	Role	Accession	Title	Source / characteristics	Reason
Ulcerative colitis	Case	GSM2147872	EC1	P500.5 Patient: P500; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 28; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147873	EC2	P500.5 Patient: P500; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 28; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147874	EC3	P500.8 Patient: P500; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 28; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147875	EC4	P500.8 Patient: P500; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 28; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147876	EC5	P500.12 Patient: P500; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 12mo; Age: 28; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147877	EC6	P500.12 Patient: P500; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 12mo; Age: 28; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147878	EC7	P502.4 Patient: P502; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 39; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147879	EC8	P502.4 Patient: P502; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 39; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147880	EC9	P502.8 Patient: P502; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 39; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147881	EC10	P502.8 Patient: P502; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 39; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147882	EC11	P502.12 Patient: P502; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 12mo; Age: 39; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147883	EC12	P502.12 Patient: P502; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 12mo; Age: 39; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147884	EC13	P602 Patient: P602; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: >12mo; Age: Missing; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147885	EC14	P602 Patient: P602; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: >12mo; Age: Missing; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147886	EC15	P603 Patient: P603; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: >12mo; Age: Missing; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147887	EC16	P603 Patient: P603; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: >12mo; Age: Missing; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147888	NH10	P501.5 Patient: P501; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 25; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147889	NH11	P501.6 Patient: P501; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 25; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147890	NH12	P501.7 Patient: P501; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 12mo; Age: 25; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147891	NH13	P503.5 Patient: P503; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 30; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147892	NH14	P503.6 Patient: P503; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 30; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147893	NH15	P503.7 Patient: P503; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 12mo; Age: 30; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147894	NH17	P503.6 Patient: P503; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 30; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147895	NH18	P503.7 Patient: P503; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 12mo; Age: 30; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147896	NH19	P505.6 Patient: P505; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 47; Sex: Male; Ethnicity: South Indian	Case marker detected.
Ulcerative colitis	Case	GSM2147897	NH1	P427.5 Patient: P427; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 30; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147898	NH20	P505.7 Patient: P505; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 12mo; Age: 47; Sex: Male; Ethnicity: South Indian	Case marker detected.
Ulcerative colitis	Case	GSM2147899	NH21	P505.5 Patient: P505; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 47; Sex: Male; Ethnicity: South Indian	Case marker detected.
Ulcerative colitis	Case	GSM2147900	NH22	P505.6 Patient: P505; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 47; Sex: Male; Ethnicity: South Indian	Case marker detected.
Ulcerative colitis	Case	GSM2147901	NH23	P505.7 Patient: P505; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 12mo; Age: 47; Sex: Male; Ethnicity: South Indian	Case marker detected.
Ulcerative colitis	Case	GSM2147902	NH24	P506.5 Patient: P506; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 30; Sex: Female; Ethnicity: Africa American	Case marker detected.
Ulcerative colitis	Case	GSM2147903	NH26	P506.7 Patient: P506; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 12mo; Age: 30; Sex: Female; Ethnicity: Africa American	Case marker detected.
Ulcerative colitis	Case	GSM2147904	NH27	P506.5 Patient: P506; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 30; Sex: Female; Ethnicity: Africa American	Case marker detected.
Ulcerative colitis	Case	GSM2147905	NH28	P506.6 Patient: P506; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 30; Sex: Female; Ethnicity: Africa American	Case marker detected.
Ulcerative colitis	Case	GSM2147906	NH29	P506.7 Patient: P506; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 12mo; Age: 30; Sex: Female; Ethnicity: Africa American	Case marker detected.
Ulcerative colitis	Case	GSM2147907	NH2	P427.6 Patient: P427; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 30; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147908	NH30	P507.5 Patient: P507; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 21; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147909	NH32	P507.5 Patient: P507; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 21; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147910	NH34	P508.5 Patient: P508; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 26; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147911	NH35	P508.6 Patient: P508; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 26; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147912	NH36	P508.5 Patient: P508; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 26; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147913	NH37	P508.6 Patient: P508; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 8mo; Age: 26; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147914	NH38	P509.5 Patient: P509; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 18; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147915	NH39	P509.5 Patient: P509; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 18; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147916	NH3	P427.7 Patient: P427; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 12mo; Age: 30; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147917	NH40	P510.5 Patient: P510; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 51; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147918	NH41	P510.5 Patient: P510; Diagnosis: Ulcerative colitis; Prognosis: Pouchitis; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 51; Sex: Female; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147919	NH42	P511.5 Patient: P511; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 4mo; Age: 38; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147920	NH43	P511.6 Patient: P511; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Prepouch ileum; Biopsytime: 8mo; Age: 38; Sex: Male; Ethnicity: Caucasian	Case marker detected.
Ulcerative colitis	Case	GSM2147921	NH44	P511.5 Patient: P511; Diagnosis: Ulcerative colitis; Prognosis: Healthy; Tissue: Ileal pouch; Biopsytime: 4mo; Age: 38; Sex: Male; Ethnicity: Caucasian	Case marker detected.
21 additional case samples are hidden from this preview.
Healthy control	Control	GSM2147947	NH64	Ileum1 Patient: IL1; Diagnosis: Normal; Prognosis: Healthy; Tissue: Ile; Biopsytime: NA; Age: Missing; Sex: Missing; Ethnicity: Caucasian	Sample-local control marker detected.
Healthy control	Control	GSM2147948	NH65	Ileum2 Patient: IL2; Diagnosis: Normal; Prognosis: Healthy; Tissue: Ile; Biopsytime: NA; Age: Missing; Sex: Missing; Ethnicity: Caucasian	Sample-local control marker detected.
Unassigned	Unassigned	GSM2147940	NH62	P701 Patient: P701; Diagnosis: FAP; Prognosis: FAP; Tissue: Prepouch ileum; Biopsytime: >12mo; Age: Missing; Sex: Missing; Ethnicity: Caucasian	No explicit case or control marker detected.
Unassigned	Unassigned	GSM2147941	NH63	P701 Patient: P701; Diagnosis: FAP; Prognosis: FAP; Tissue: Ileal pouch; Biopsytime: >12mo; Age: Missing; Sex: Missing; Ethnicity: Caucasian	No explicit case or control marker detected.
Unassigned	Unassigned	GSM2147942	NH54	P601 Patient: P601; Diagnosis: FAP; Prognosis: FAP; Tissue: Prepouch ileum; Biopsytime: >12mo; Age: Missing; Sex: Male; Ethnicity: Caucasian	No explicit case or control marker detected.
Unassigned	Unassigned	GSM2147943	NH55	P601 Patient: P601; Diagnosis: FAP; Prognosis: FAP; Tissue: Ileal pouch; Biopsytime: >12mo; Age: Missing; Sex: Male; Ethnicity: Caucasian	No explicit case or control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort