These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
EC1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P500.5
- Characteristics
- patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147872
sample_title: EC1
source_name: P500.5
characteristics: patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian
EC2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P500.5
- Characteristics
- patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147873
sample_title: EC2
source_name: P500.5
characteristics: patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 28; Sex: male; ethnicity: Caucasian
EC3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P500.8
- Characteristics
- patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147874
sample_title: EC3
source_name: P500.8
characteristics: patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian
EC4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P500.8
- Characteristics
- patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147875
sample_title: EC4
source_name: P500.8
characteristics: patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 28; Sex: male; ethnicity: Caucasian
EC5
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P500.12
- Characteristics
- patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147876
sample_title: EC5
source_name: P500.12
characteristics: patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian
EC6
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P500.12
- Characteristics
- patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147877
sample_title: EC6
source_name: P500.12
characteristics: patient: P500; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 28; Sex: male; ethnicity: Caucasian
EC7
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.4
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147878
sample_title: EC7
source_name: P502.4
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian
EC8
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.4
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147879
sample_title: EC8
source_name: P502.4
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 39; Sex: female; ethnicity: Caucasian
EC9
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.8
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147880
sample_title: EC9
source_name: P502.8
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian
EC10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.8
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147881
sample_title: EC10
source_name: P502.8
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: 39; Sex: female; ethnicity: Caucasian
EC11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.12
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147882
sample_title: EC11
source_name: P502.12
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian
EC12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.12
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147883
sample_title: EC12
source_name: P502.12
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 39; Sex: female; ethnicity: Caucasian
EC13
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P602
- Characteristics
- patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147884
sample_title: EC13
source_name: P602
characteristics: patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian
EC14
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P602
- Characteristics
- patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147885
sample_title: EC14
source_name: P602
characteristics: patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: female; ethnicity: Caucasian
EC15
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P603
- Characteristics
- patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147886
sample_title: EC15
source_name: P603
characteristics: patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
EC16
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P603
- Characteristics
- patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147887
sample_title: EC16
source_name: P603
characteristics: patient: P603; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
NH10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P501.5
- Characteristics
- patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147888
sample_title: NH10
source_name: P501.5
characteristics: patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian
NH11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P501.6
- Characteristics
- patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147889
sample_title: NH11
source_name: P501.6
characteristics: patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian
NH12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P501.7
- Characteristics
- patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147890
sample_title: NH12
source_name: P501.7
characteristics: patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian
NH13
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P503.5
- Characteristics
- patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147891
sample_title: NH13
source_name: P503.5
characteristics: patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Caucasian
NH14
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P503.6
- Characteristics
- patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147892
sample_title: NH14
source_name: P503.6
characteristics: patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian
NH15
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P503.7
- Characteristics
- patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147893
sample_title: NH15
source_name: P503.7
characteristics: patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian
NH17
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P503.6
- Characteristics
- patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147894
sample_title: NH17
source_name: P503.6
characteristics: patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Caucasian
NH18
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P503.7
- Characteristics
- patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147895
sample_title: NH18
source_name: P503.7
characteristics: patient: P503; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Caucasian
NH19
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P505.6
- Characteristics
- patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147896
sample_title: NH19
source_name: P505.6
characteristics: patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian
NH1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P427.5
- Characteristics
- patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147897
sample_title: NH1
source_name: P427.5
characteristics: patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian
NH20
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P505.7
- Characteristics
- patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147898
sample_title: NH20
source_name: P505.7
characteristics: patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian
NH21
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P505.5
- Characteristics
- patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 47; Sex: male; ethnicity: South Indian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147899
sample_title: NH21
source_name: P505.5
characteristics: patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 47; Sex: male; ethnicity: South Indian
NH22
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P505.6
- Characteristics
- patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147900
sample_title: NH22
source_name: P505.6
characteristics: patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 47; Sex: male; ethnicity: South Indian
NH23
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P505.7
- Characteristics
- patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147901
sample_title: NH23
source_name: P505.7
characteristics: patient: P505; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 47; Sex: male; ethnicity: South Indian
NH24
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P506.5
- Characteristics
- patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147902
sample_title: NH24
source_name: P506.5
characteristics: patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American
NH26
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P506.7
- Characteristics
- patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147903
sample_title: NH26
source_name: P506.7
characteristics: patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American
NH27
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P506.5
- Characteristics
- patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147904
sample_title: NH27
source_name: P506.5
characteristics: patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: female; ethnicity: Africa American
NH28
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P506.6
- Characteristics
- patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Africa American
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147905
sample_title: NH28
source_name: P506.6
characteristics: patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: 30; Sex: female; ethnicity: Africa American
NH29
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P506.7
- Characteristics
- patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147906
sample_title: NH29
source_name: P506.7
characteristics: patient: P506; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: female; ethnicity: Africa American
NH2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P427.6
- Characteristics
- patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147907
sample_title: NH2
source_name: P427.6
characteristics: patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 30; Sex: male; ethnicity: Caucasian
NH30
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P507.5
- Characteristics
- patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147908
sample_title: NH30
source_name: P507.5
characteristics: patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian
NH32
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P507.5
- Characteristics
- patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147909
sample_title: NH32
source_name: P507.5
characteristics: patient: P507; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 21; Sex: male; ethnicity: Caucasian
NH34
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P508.5
- Characteristics
- patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147910
sample_title: NH34
source_name: P508.5
characteristics: patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian
NH35
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P508.6
- Characteristics
- patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147911
sample_title: NH35
source_name: P508.6
characteristics: patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian
NH36
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P508.5
- Characteristics
- patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147912
sample_title: NH36
source_name: P508.5
characteristics: patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 26; Sex: female; ethnicity: Caucasian
NH37
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P508.6
- Characteristics
- patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147913
sample_title: NH37
source_name: P508.6
characteristics: patient: P508; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 26; Sex: female; ethnicity: Caucasian
NH38
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P509.5
- Characteristics
- patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147914
sample_title: NH38
source_name: P509.5
characteristics: patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian
NH39
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P509.5
- Characteristics
- patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147915
sample_title: NH39
source_name: P509.5
characteristics: patient: P509; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 18; Sex: male; ethnicity: Caucasian
NH3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P427.7
- Characteristics
- patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147916
sample_title: NH3
source_name: P427.7
characteristics: patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian
NH40
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P510.5
- Characteristics
- patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147917
sample_title: NH40
source_name: P510.5
characteristics: patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian
NH41
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P510.5
- Characteristics
- patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147918
sample_title: NH41
source_name: P510.5
characteristics: patient: P510; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: 51; Sex: female; ethnicity: Caucasian
NH42
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P511.5
- Characteristics
- patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147919
sample_title: NH42
source_name: P511.5
characteristics: patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian
NH43
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P511.6
- Characteristics
- patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147920
sample_title: NH43
source_name: P511.6
characteristics: patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian
NH44
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P511.5
- Characteristics
- patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147921
sample_title: NH44
source_name: P511.5
characteristics: patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 38; Sex: male; ethnicity: Caucasian
NH45
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P511.6
- Characteristics
- patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147922
sample_title: NH45
source_name: P511.6
characteristics: patient: P511; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: 38; Sex: male; ethnicity: Caucasian
NH47
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P512.5
- Characteristics
- patient: P512; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 42; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147923
sample_title: NH47
source_name: P512.5
characteristics: patient: P512; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 42; Sex: male; ethnicity: Caucasian
NH48
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P513.5
- Characteristics
- patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147924
sample_title: NH48
source_name: P513.5
characteristics: patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian
NH49
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P513.5
- Characteristics
- patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147925
sample_title: NH49
source_name: P513.5
characteristics: patient: P513; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 59; Sex: male; ethnicity: Caucasian
NH4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P427.5
- Characteristics
- patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147926
sample_title: NH4
source_name: P427.5
characteristics: patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: 30; Sex: male; ethnicity: Caucasian
NH50
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P600.5
- Characteristics
- patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147927
sample_title: NH50
source_name: P600.5
characteristics: patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian
NH51
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P600.6
- Characteristics
- patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147928
sample_title: NH51
source_name: P600.6
characteristics: patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian
NH52
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P600.5
- Characteristics
- patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147929
sample_title: NH52
source_name: P600.5
characteristics: patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: female; ethnicity: Caucasian
NH53
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P600.6
- Characteristics
- patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147930
sample_title: NH53
source_name: P600.6
characteristics: patient: P600; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: female; ethnicity: Caucasian
NH56
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P604.6
- Characteristics
- patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147931
sample_title: NH56
source_name: P604.6
characteristics: patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian
NH58
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P604.6
- Characteristics
- patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147932
sample_title: NH58
source_name: P604.6
characteristics: patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 8mo; age: missing; Sex: male; ethnicity: Caucasian
NH59
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P604.7
- Characteristics
- patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147933
sample_title: NH59
source_name: P604.7
characteristics: patient: P604; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: male; ethnicity: Caucasian
NH60
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P607.5
- Characteristics
- patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147934
sample_title: NH60
source_name: P607.5
characteristics: patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian
NH61
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P607.5
- Characteristics
- patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147935
sample_title: NH61
source_name: P607.5
characteristics: patient: P607; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 4mo; age: missing; Sex: male; ethnicity: Caucasian
NH6
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P427.7
- Characteristics
- patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147936
sample_title: NH6
source_name: P427.7
characteristics: patient: P427; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: 30; Sex: male; ethnicity: Caucasian
NH7
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P501.5
- Characteristics
- patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147937
sample_title: NH7
source_name: P501.5
characteristics: patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 4mo; age: 25; Sex: male; ethnicity: Caucasian
NH8
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P501.6
- Characteristics
- patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147938
sample_title: NH8
source_name: P501.6
characteristics: patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 8mo; age: 25; Sex: male; ethnicity: Caucasian
NH9
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P501.7
- Characteristics
- patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147939
sample_title: NH9
source_name: P501.7
characteristics: patient: P501; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: 25; Sex: male; ethnicity: Caucasian
NH62
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P701
- Characteristics
- patient: P701; diagnosis: FAP; prognosis: FAP; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: missing; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147940
sample_title: NH62
source_name: P701
characteristics: patient: P701; diagnosis: FAP; prognosis: FAP; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: missing; ethnicity: Caucasian
NH63
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P701
- Characteristics
- patient: P701; diagnosis: FAP; prognosis: FAP; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: missing; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147941
sample_title: NH63
source_name: P701
characteristics: patient: P701; diagnosis: FAP; prognosis: FAP; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: missing; ethnicity: Caucasian
NH54
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P601
- Characteristics
- patient: P601; diagnosis: FAP; prognosis: FAP; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147942
sample_title: NH54
source_name: P601
characteristics: patient: P601; diagnosis: FAP; prognosis: FAP; tissue: Prepouch ileum; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
NH55
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P601
- Characteristics
- patient: P601; diagnosis: FAP; prognosis: FAP; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147943
sample_title: NH55
source_name: P601
characteristics: patient: P601; diagnosis: FAP; prognosis: FAP; tissue: Ileal pouch; biopsytime: >12mo; age: missing; Sex: male; ethnicity: Caucasian
EC11b
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P502.12
- Characteristics
- patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147944
sample_title: EC11b
source_name: P502.12
characteristics: patient: P502; diagnosis: Ulcerative colitis; prognosis: Pouchitis; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian
EC13b
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P602
- Characteristics
- patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147945
sample_title: EC13b
source_name: P602
characteristics: patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Ileal pouch; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian
EC14b
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- P602
- Characteristics
- patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147946
sample_title: EC14b
source_name: P602
characteristics: patient: P602; diagnosis: Ulcerative colitis; prognosis: Healthy; tissue: Prepouch ileum; biopsytime: 12mo; age: missing; Sex: female; ethnicity: Caucasian
NH64
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Ileum1
- Characteristics
- patient: IL1; diagnosis: Normal; prognosis: Healthy; tissue: Ile; biopsytime: NA; age: missing; Sex: missing; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147947
sample_title: NH64
source_name: Ileum1
characteristics: patient: IL1; diagnosis: Normal; prognosis: Healthy; tissue: Ile; biopsytime: NA; age: missing; Sex: missing; ethnicity: Caucasian
NH65
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Ileum2
- Characteristics
- patient: IL2; diagnosis: Normal; prognosis: Healthy; tissue: Ile; biopsytime: NA; age: missing; Sex: missing; ethnicity: Caucasian
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2147948
sample_title: NH65
source_name: Ileum2
characteristics: patient: IL2; diagnosis: Normal; prognosis: Healthy; tissue: Ile; biopsytime: NA; age: missing; Sex: missing; ethnicity: Caucasian