A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Population Specimen Collection and Profiling of Inflammatory Bowel Disease

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

72 case / 62 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 134 samples
Specimen: Tissue
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Schadt E
Contact name: Eric Schadt
Submission date: 2016-06-24
Last update: 2019-05-15
Organization: Icahn School of Medicine at Mount Sinai
Department: Not available
Public date: 2017-07-07
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA326727

Summary

This study focuses on inflammatory bowel disease gene expression profiling. Surgical specimens from 134 patients undergoing bowel resection for inflammatory bowel disease (IBD) and non IBD controls at Mount Sinai Medical Center were collected as the source of tissue. Control samples (CLs) were harvested from normal non inflamed bowel located more than 10 cm away from the tumor from patients undergoing bowel resection for sporadic colon cancer. Ulcerative colitis (UC) and Crohn’s (CD) patient samples were all isolated from areas containing moderate to severe inflammation. The diagnostic pathology report for each specimen was provided by the Mount Sinai Hospital Pathology Department. Patients with UC and patients with CD shared common medications including corticosteroids, infliximab, azathioprine, and mesalamine.

Overall design

Surgical specimens from 134 patients undergoing bowel resection for inflammatory bowel disease (IBD) and non IBD controls at Mount Sinai Medical Center were collected as the source of tissue. Control samples (CLs) were harvested from normal non inflamed bowel located more than 10 cm away from the tumor from patients undergoing bowel resection for sporadic colon cancer. Ulcerative colitis (UC) and Crohn’s (CD) patient samples were all isolated from areas containing moderate to severe inflammation. The diagnostic pathology report for each specimen was provided by the Mount Sinai Hospital Pathology Department. Patients with UC and patients with CD shared common medications including corticosteroids, infliximab, azathioprine, and mesalamine. The samples were collected fresh and the tissue was further processed for isolation. A representative 0.5 cm tissue fragment was isolated from the collected surgical specimen samples, flash frozen and stored at -80C. Tissue was homogenized in Trizol following the manufacturer's protocol (Life Technologies) and RNA extraction was performed. RIN scores >7 were used for Poly A RNA-seq.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 134 GSM samples	Primary source
recount3	Trusted source evidence for processed count availability. recount3 project ID srp077046	Available
Expression Atlas	Curated expression experiment linkage and source URL. Expression Atlas accession E-GEOD-83687	Available
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 4 linked publications 4 DOIs Primary publication A functional genomics predictive network model identifies regulators of inflammatory bowel disease. Nature genetics, 2017 PubMed DOI Related publications The critical role of COL1A1 revealed by integrated bioinformatics analysis of differentially-expressed genes in colorectal cancer and inflammatory bowel disease. Computers in biology and medicine, 2025 PubMed DOI Elucidating the role of TWIST1 in ulcerative colitis: a comprehensive bioinformatics and machine learning approach. Frontiers in genetics, 2024 PubMed DOI Genetic and dietary modulators of the inflammatory response in the gastrointestinal tract of the BXD mouse genetic reference population. eLife, 2023 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

By Siftome standards, no expert review was triggered.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Crohn's disease, colorectal cancer, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Ulcerative colitis 72 samples
Likely control group Control 62 samples

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Tissue. Comparison suitability: 0%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Colorectal cancer, Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: recount3 reports trusted processed count availability.
External evidence: Expression Atlas curated experiment link is available.
External evidence: PubMed links 4 publications; 4 DOIs available: PMID 28892060, PMID 37855835, PMID 38510272, PMID 40179807.
Publication context: A functional genomics predictive network model identifies regulators of inflammatory bowel disease.. Nature genetics, 2017. PMID 28892060. DOI 10.1038/ng.3947.
Publication context: Genetic and dietary modulators of the inflammatory response in the gastrointestinal tract of the BXD mouse genetic reference population.. eLife, 2023. PMID 37855835. DOI 10.7554/eLife.87569.
Publication context: Elucidating the role of TWIST1 in ulcerative colitis: a comprehensive bioinformatics and machine learning approach.. Frontiers in genetics, 2024. PMID 38510272. DOI 10.3389/fgene.2024.1296570.
Publication context: 1 additional linked PubMed publications are available.

Cautions

Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

No dataset warnings

Normalized Fields

146 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM2212623 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum source_name: rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212634 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212649 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212661 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212663 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum source_name: rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212666 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212667 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212668 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212673 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212674 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212678 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212689 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212691 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212692 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum source_name: rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212694 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212695 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum source_name: rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212698 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212699 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212703 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212704 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212707 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212713 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rectum source_name: rectum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212722 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212735 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212737 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212738 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212743 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM2212750 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum source_name: ileum_slightlyinflamed sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM2212755 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: colon sample-anatomical-source-v1 sample-local anatomical source

assay_type bulk RNA-seq GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... keyword match keyword match: bulk rna-seq

disease Crohn's disease GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence Crohn's dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... controlled vocabulary controlled vocabulary disease match: Crohn's

disease colorectal cancer GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon cancer dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... controlled vocabulary controlled vocabulary disease match: colon cancer

disease inflammatory bowel disease GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel disease dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... controlled vocabulary controlled vocabulary disease match: inflammatory bowel disease

disease ulcerative colitis GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212623 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 10F rectum male Ulcerative Colitis S2 rectum gender: male; age (yr): 37; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212625 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 10H leftcolon male Ulcerative Colitis S4 leftcolon gender: male; age (yr): 44; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212626 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10J ileumcecum female Crohn's disease S5 ileumcecum gender: female; age (yr): 19; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212627 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10K smallbowel female Crohn's disease S6 smallbowel gender: female; age (yr): 57; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212628 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 10L leftcolon male Ulcerative Colitis S7 leftcolon gender: male; age (yr): 48; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212629 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 10M rightcolon_noninflamed female Ulcerative Colitis S8 rightcolon_noninflamed gender: female; age (yr): 28; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212630 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10O smallbowel male Crohn's disease S9 smallbowel gender: male; age (yr): 50; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212632 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10Q leftcolon male Crohn's disease S11 leftcolon gender: male; age (yr): 33; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212634 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10S ileum male Crohn's disease S13 ileum gender: male; age (yr): 57; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212635 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10U sigmoid male Crohn's disease S14 sigmoid gender: male; age (yr): 38; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212640 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 11I leftcolon female Ulcerative Colitis S19 leftcolon gender: female; age (yr): 24; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212641 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 11L leftcolon male Ulcerative Colitis S20 leftcolon gender: male; age (yr): 31; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212642 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 11P rightcolon female Ulcerative Colitis S21 rightcolon gender: female; age (yr): 21; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212645 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 11T rightcolon female Crohn's disease S24 rightcolon gender: female; age (yr): 31; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212649 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 12H ileum female Crohn's disease S28 ileum gender: female; age (yr): 21; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212650 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 12L rightcolon male Ulcerative Colitis S29 rightcolon gender: male; age (yr): 54; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212651 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 12M leftcolon male Ulcerative Colitis S30 leftcolon gender: male; age (yr): 57; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212652 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 12O smallbowel female Crohn's disease S31 smallbowel gender: female; age (yr): 31; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212653 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 12P rightcolon male Ulcerative Colitis S32 rightcolon gender: male; age (yr): 26; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212656 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 12T sigmoid female Ulcerative Colitis S35 sigmoid gender: female; age (yr): 24; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212663 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 1M rectum male Ulcerative Colitis S42 rectum gender: male; age (yr): 66; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212664 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 1O smallbowel female Crohn's disease S43 smallbowel gender: female; age (yr): 57; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212665 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 1P leftcolon male Ulcerative Colitis S44 leftcolon gender: male; age (yr): 27; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212673 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2J ileum male Crohn's disease S52 ileum gender: male; age (yr): 25; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212674 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2K ileum male Crohn's disease S53 ileum gender: male; age (yr): 42; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212675 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2L smallbowel male Crohn's disease S54 smallbowel gender: male; age (yr): 52; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212678 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2P ileum male Crohn's disease S57 ileum gender: male; age (yr): 25; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212679 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2Q rightcolon_inflamed female Crohn's disease S58 rightcolon_inflamed gender: female; age (yr): 47; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212681 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2S leftcolon female Crohn's disease S60 leftcolon gender: female; age (yr): 71; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212686 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 3I leftcolon female Ulcerative Colitis S65 leftcolon gender: female; age (yr): 24; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212687 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 3K leftcolon female Ulcerative Colitis S66 leftcolon gender: female; age (yr): 39; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212689 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 3N colon male Crohn's disease S68 colon gender: male; age (yr): 43; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212691 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 3S ileum male Crohn's disease S70 ileum gender: male; age (yr): 43; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212694 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4E_9H ileum female Crohn's disease S73 ileum gender: female; age (yr): 29; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212696 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4J smallbowel female Crohn's disease S75 smallbowel gender: female; age (yr): 44; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212697 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 4K leftcolon female Ulcerative Colitis S76 leftcolon gender: female; age (yr): 89; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212698 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4L ileum female Crohn's disease S77 ileum gender: female; age (yr): 35; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212700 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 4P leftcolon male Ulcerative Colitis S79 leftcolon gender: male; age (yr): 20; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212701 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4S smallbowel male Crohn's disease S80 smallbowel gender: male; age (yr): 37; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212702 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4W leftcolon male Crohn's disease S81 leftcolon gender: male; age (yr): 58; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212703 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4Y ileum female Crohn's disease S82 ileum gender: female; age (yr): 39; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212704 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 5D ileum male Crohn's disease S83 ileum gender: male; age (yr): 23; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212705 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 5J leftcolon male Ulcerative Colitis S84 leftcolon gender: male; age (yr): 72; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212706 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 5M leftcolon male Ulcerative Colitis S85 leftcolon gender: male; age (yr): 32; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212707 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 5N ileum female Crohn's disease S86 ileum gender: female; age (yr): 57; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212708 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 5P smallbowel male Ulcerative Colitis S87 smallbowel gender: male; age (yr): 38; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212709 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 5S smallbowel male Crohn's disease S88 smallbowel gender: male; age (yr): 8; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212711 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 6H smallbowel male Crohn's disease S90 smallbowel gender: male; age (yr): 29; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212712 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 6J leftcolon male Ulcerative Colitis S91 leftcolon gender: male; age (yr): 26; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212713 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 6N rectum male Ulcerative Colitis S92 rectum gender: male; age (yr): 32; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 6O rightcolon_noninflamed male Ulcerative Colitis S93 rightcolon_noninflamed gender: male; age (yr): 54; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212715 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 6P leftcolon female Ulcerative Colitis S94 leftcolon gender: female; age (yr): 39; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 6S leftcolon male Crohn's disease S96 leftcolon gender: male; age (yr): 64; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 6U ileum male Crohn's disease S98 ileum gender: male; age (yr): 50; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212720 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 6W leftcolon female Crohn's disease S99 leftcolon gender: female; age (yr): 20; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212722 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 7E ileum female Crohn's disease S101 ileum gender: female; age (yr): 33; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212723 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 7H leftcolon male Ulcerative Colitis S102 leftcolon gender: male; age (yr): 22; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212724 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 7L leftcolon male Crohn's disease S103 leftcolon gender: male; age (yr): 51; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212725 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 7M leftcolon male Ulcerative Colitis S104 leftcolon gender: male; age (yr): 4; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212728 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 7T leftcolon female Ulcerative Colitis S107 leftcolon gender: female; age (yr): 56; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 7W ileum male Crohn's disease S111 ileum gender: male; age (yr): 36; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212734 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8E smallbowel male Crohn's disease S113 smallbowel gender: male; age (yr): 25; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212735 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8F ileum male Crohn's disease S114 ileum gender: male; age (yr): 40; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212736 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 8I leftcolon female Ulcerative Colitis S115 leftcolon gender: female; age (yr): 27; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212737 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8J ileum male Crohn's disease S116 ileum gender: male; age (yr): 42; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212738 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8K ileum female Crohn's disease S117 ileum gender: female; age (yr): 29; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212740 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 8M leftcolon male Ulcerative Colitis S119 leftcolon gender: male; age (yr): 20; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212742 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8S smallbowel male Crohn's disease S121 smallbowel gender: male; age (yr): 39; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212743 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8 ileum male Crohn's disease S122 ileum gender: male; age (yr): 46; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM2212744 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 8U leftcolon female Ulcerative Colitis S123 leftcolon gender: female; age (yr): 21; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212748 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 9I_6I leftcolon male Ulcerative Colitis S127 leftcolon gender: male; age (yr): 64; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM2212750 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 9N ileum_slightlyinflamed female Ulcerative Colitis S129 ileum_slightlyinflamed gender: female; age (yr): 89; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM2212751 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 9O leftcolon male Crohn's disease S130 leftcolon gender: male; age (yr): 58; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2212752 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 9Q sigmoid male Crohn's disease S131 sigmoid gender: male; age (yr): 38; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary disease match: Crohn's disease

organism Homo sapiens GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... keyword match keyword match: homo sapiens

sample_type inflamed tissue GSM2212679 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed 2Q rightcolon_inflamed female Crohn's disease S58 rightcolon_inflamed gender: female; age (yr): 47; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary sample type match: inflamed

tissue colon GSE83687 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE83687 dataset_title: A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Mount Sinai Hospital (MSH) Populat... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM2212623 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum 10F rectum male Ulcerative Colitis S2 rectum gender: male; age (yr): 37; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary tissue match: rectum

tissue intestine GSM2212634 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 10S ileum male Crohn's disease S13 ileum gender: male; age (yr): 57; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212649 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 12H ileum female Crohn's disease S28 ileum gender: female; age (yr): 21; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212661 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 1F ileum female control S40 ileum gender: female; age (yr): 87; clinical condition: control controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM2212663 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum 1M rectum male Ulcerative Colitis S42 rectum gender: male; age (yr): 66; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary tissue match: rectum

tissue colon GSM2212666 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon 1R colon male control S45 colon gender: male; age (yr): 71; clinical condition: control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM2212667 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon 1T colon female control S46 colon gender: female; age (yr): 77; clinical condition: control controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM2212668 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon 1Y colon male control S47 colon gender: male; age (yr): 57; clinical condition: control controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM2212673 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 2J ileum male Crohn's disease S52 ileum gender: male; age (yr): 25; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212674 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 2K ileum male Crohn's disease S53 ileum gender: male; age (yr): 42; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212678 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 2P ileum male Crohn's disease S57 ileum gender: male; age (yr): 25; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM2212689 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon 3N colon male Crohn's disease S68 colon gender: male; age (yr): 43; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM2212691 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 3S ileum male Crohn's disease S70 ileum gender: male; age (yr): 43; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM2212692 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum 3W rectum male control S71 rectum gender: male; age (yr): 78; clinical condition: control controlled vocabulary controlled vocabulary tissue match: rectum

tissue intestine GSM2212694 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 4E_9H ileum female Crohn's disease S73 ileum gender: female; age (yr): 29; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM2212695 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum 4F rectum female control S74 rectum gender: female; age (yr): 48; clinical condition: control controlled vocabulary controlled vocabulary tissue match: rectum

tissue intestine GSM2212698 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 4L ileum female Crohn's disease S77 ileum gender: female; age (yr): 35; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212699 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 4M ileum male control S78 ileum gender: male; age (yr): 39; clinical condition: control controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212703 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 4Y ileum female Crohn's disease S82 ileum gender: female; age (yr): 39; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212704 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 5D ileum male Crohn's disease S83 ileum gender: male; age (yr): 23; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212707 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 5N ileum female Crohn's disease S86 ileum gender: female; age (yr): 57; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM2212713 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence rectum 6N rectum male Ulcerative Colitis S92 rectum gender: male; age (yr): 32; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary tissue match: rectum

tissue colon GSM2212716 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon 6R colon male control S95 colon gender: male; age (yr): 4; clinical condition: control controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM2212719 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 6U ileum male Crohn's disease S98 ileum gender: male; age (yr): 50; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212722 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 7E ileum female Crohn's disease S101 ileum gender: female; age (yr): 33; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212732 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 7W ileum male Crohn's disease S111 ileum gender: male; age (yr): 36; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212735 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 8F ileum male Crohn's disease S114 ileum gender: male; age (yr): 40; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212737 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 8J ileum male Crohn's disease S116 ileum gender: male; age (yr): 42; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212738 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 8K ileum female Crohn's disease S117 ileum gender: female; age (yr): 29; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212743 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 8 ileum male Crohn's disease S122 ileum gender: male; age (yr): 46; clinical condition: Crohn's disease controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM2212750 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum 9N ileum_slightlyinflamed female Ulcerative Colitis S129 ileum_slightlyinflamed gender: female; age (yr): 89; clinical condition: Ulcerative Colitis controlled vocabulary controlled vocabulary tissue match: ileum

tissue colon GSM2212755 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon 9V colon female control S134 colon gender: female; age (yr): 51; clinical condition: control controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

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Study totals: Case 72 | Control 62 | Unassigned 0 | Excluded 0 | Ambiguous 0 showing 100 of 134 preview rows

Group	Role	Accession	Title	Source / characteristics	Reason
Ulcerative colitis	Case	GSM2212623	10F rectum male Ulcerative Colitis S2	Rectum Gender: Male; Age (yr): 37; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212625	10H leftcolon male Ulcerative Colitis S4	Leftcolon Gender: Male; Age (yr): 44; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212626	10J ileumcecum female Crohn's disease S5	Ileumcecum Gender: Female; Age (yr): 19; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212627	10K smallbowel female Crohn's disease S6	Smallbowel Gender: Female; Age (yr): 57; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212628	10L leftcolon male Ulcerative Colitis S7	Leftcolon Gender: Male; Age (yr): 48; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212630	10O smallbowel male Crohn's disease S9	Smallbowel Gender: Male; Age (yr): 50; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212632	10Q leftcolon male Crohn's disease S11	Leftcolon Gender: Male; Age (yr): 33; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212634	10S ileum male Crohn's disease S13	Ileum Gender: Male; Age (yr): 57; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212635	10U sigmoid male Crohn's disease S14	Sigmoid Gender: Male; Age (yr): 38; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212640	11I leftcolon female Ulcerative Colitis S19	Leftcolon Gender: Female; Age (yr): 24; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212641	11L leftcolon male Ulcerative Colitis S20	Leftcolon Gender: Male; Age (yr): 31; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212642	11P rightcolon female Ulcerative Colitis S21	Rightcolon Gender: Female; Age (yr): 21; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212645	11T rightcolon female Crohn's disease S24	Rightcolon Gender: Female; Age (yr): 31; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212649	12H ileum female Crohn's disease S28	Ileum Gender: Female; Age (yr): 21; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212650	12L rightcolon male Ulcerative Colitis S29	Rightcolon Gender: Male; Age (yr): 54; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212651	12M leftcolon male Ulcerative Colitis S30	Leftcolon Gender: Male; Age (yr): 57; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212652	12O smallbowel female Crohn's disease S31	Smallbowel Gender: Female; Age (yr): 31; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212653	12P rightcolon male Ulcerative Colitis S32	Rightcolon Gender: Male; Age (yr): 26; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212656	12T sigmoid female Ulcerative Colitis S35	Sigmoid Gender: Female; Age (yr): 24; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212663	1M rectum male Ulcerative Colitis S42	Rectum Gender: Male; Age (yr): 66; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212664	1O smallbowel female Crohn's disease S43	Smallbowel Gender: Female; Age (yr): 57; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212665	1P leftcolon male Ulcerative Colitis S44	Leftcolon Gender: Male; Age (yr): 27; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212673	2J ileum male Crohn's disease S52	Ileum Gender: Male; Age (yr): 25; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212674	2K ileum male Crohn's disease S53	Ileum Gender: Male; Age (yr): 42; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212675	2L smallbowel male Crohn's disease S54	Smallbowel Gender: Male; Age (yr): 52; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212678	2P ileum male Crohn's disease S57	Ileum Gender: Male; Age (yr): 25; Clinical condition: Crohn's disease	Case marker detected.
Inflamed tissue	Case	GSM2212679	2Q rightcolon_inflamed female Crohn's disease S58	Rightcolon_inflamed Gender: Female; Age (yr): 47; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212681	2S leftcolon female Crohn's disease S60	Leftcolon Gender: Female; Age (yr): 71; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212686	3I leftcolon female Ulcerative Colitis S65	Leftcolon Gender: Female; Age (yr): 24; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212687	3K leftcolon female Ulcerative Colitis S66	Leftcolon Gender: Female; Age (yr): 39; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212689	3N colon male Crohn's disease S68	Colon Gender: Male; Age (yr): 43; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212691	3S ileum male Crohn's disease S70	Ileum Gender: Male; Age (yr): 43; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212694	4E_9H ileum female Crohn's disease S73	Ileum Gender: Female; Age (yr): 29; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212696	4J smallbowel female Crohn's disease S75	Smallbowel Gender: Female; Age (yr): 44; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212697	4K leftcolon female Ulcerative Colitis S76	Leftcolon Gender: Female; Age (yr): 89; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212698	4L ileum female Crohn's disease S77	Ileum Gender: Female; Age (yr): 35; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212700	4P leftcolon male Ulcerative Colitis S79	Leftcolon Gender: Male; Age (yr): 20; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212701	4S smallbowel male Crohn's disease S80	Smallbowel Gender: Male; Age (yr): 37; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212702	4W leftcolon male Crohn's disease S81	Leftcolon Gender: Male; Age (yr): 58; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212703	4Y ileum female Crohn's disease S82	Ileum Gender: Female; Age (yr): 39; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212704	5D ileum male Crohn's disease S83	Ileum Gender: Male; Age (yr): 23; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212705	5J leftcolon male Ulcerative Colitis S84	Leftcolon Gender: Male; Age (yr): 72; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212706	5M leftcolon male Ulcerative Colitis S85	Leftcolon Gender: Male; Age (yr): 32; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212707	5N ileum female Crohn's disease S86	Ileum Gender: Female; Age (yr): 57; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212708	5P smallbowel male Ulcerative Colitis S87	Smallbowel Gender: Male; Age (yr): 38; Clinical condition: Ulcerative Colitis	Case marker detected.
Crohn's disease	Case	GSM2212709	5S smallbowel male Crohn's disease S88	Smallbowel Gender: Male; Age (yr): 8; Clinical condition: Crohn's disease	Case marker detected.
Crohn's disease	Case	GSM2212711	6H smallbowel male Crohn's disease S90	Smallbowel Gender: Male; Age (yr): 29; Clinical condition: Crohn's disease	Case marker detected.
Ulcerative colitis	Case	GSM2212712	6J leftcolon male Ulcerative Colitis S91	Leftcolon Gender: Male; Age (yr): 26; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212713	6N rectum male Ulcerative Colitis S92	Rectum Gender: Male; Age (yr): 32; Clinical condition: Ulcerative Colitis	Case marker detected.
Ulcerative colitis	Case	GSM2212715	6P leftcolon female Ulcerative Colitis S94	Leftcolon Gender: Female; Age (yr): 39; Clinical condition: Ulcerative Colitis	Case marker detected.
22 additional case samples are hidden from this preview.
Control	Control	GSM2212622	10E smallbowel female control S1	Smallbowel Gender: Female; Age (yr): 83; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212624	10G rightcolon female control S3	Rightcolon Gender: Female; Age (yr): 52; Clinical condition: Control	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM2212629	10M rightcolon_noninflamed female Ulcerative Colitis S8	Rightcolon_noninflamed Gender: Female; Age (yr): 28; Clinical condition: Ulcerative Colitis	Sample-local control marker detected.
Control	Control	GSM2212631	10P rightcolon male control S10	Rightcolon Gender: Male; Age (yr): 79; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212633	10R sigmoid male control S12	Sigmoid Gender: Male; Age (yr): 73; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212636	10V rightcolon female control S15	Rightcolon Gender: Female; Age (yr): 40; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212637	10W rightcolon female control S16	Rightcolon Gender: Female; Age (yr): 73; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212638	11B ileocolic male control S17	Ileocolic Gender: Male; Age (yr): 59; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212639	11E smallbowel female control S18	Smallbowel Gender: Female; Age (yr): 27; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212643	11R rightcolon male control S22	Rightcolon Gender: Male; Age (yr): 69; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212644	11S rightcolon female control S23	Rightcolon Gender: Female; Age (yr): 34; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212646	11U smallbowel female control S25	Smallbowel Gender: Female; Age (yr): 27; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212647	11W rightcolon female control S26	Rightcolon Gender: Female; Age (yr): 76; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212648	12F_6M leftcolon male control S27	Leftcolon Gender: Male; Age (yr): 66; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212654	12R rightcolon female control S33	Rightcolon Gender: Female; Age (yr): 88; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212655	12S rightcolon male control S34	Rightcolon Gender: Male; Age (yr): 75; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212657	12U leftcolon female control S36	Leftcolon Gender: Female; Age (yr): 74; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212658	12W smallbowel male control S37	Smallbowel Gender: Male; Age (yr): 57; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212659	1C sigmoid female control S38	Sigmoid Gender: Female; Age (yr): 72; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212660	1D_7D sigmoid female control S39	Sigmoid Gender: Female; Age (yr): 62; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212661	1F ileum female control S40	Ileum Gender: Female; Age (yr): 87; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212662	1I sigmoid male control S41	Sigmoid Gender: Male; Age (yr): 60; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212666	1R colon male control S45	Colon Gender: Male; Age (yr): 71; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212667	1T colon female control S46	Colon Gender: Female; Age (yr): 77; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212668	1Y colon male control S47	Colon Gender: Male; Age (yr): 57; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212669	2D rightcolon male control S48	Rightcolon Gender: Male; Age (yr): 94; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212670	2E smallbowel male control S49	Smallbowel Gender: Male; Age (yr): 73; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212671	2F sigmoid male control S50	Sigmoid Gender: Male; Age (yr): 50; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212672	2I sigmoid male control S51	Sigmoid Gender: Male; Age (yr): 47; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212676	2M rectosigmoid female control S55	Rectosigmoid Gender: Female; Age (yr): 49; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212677	2N leftcolon female control S56	Leftcolon Gender: Female; Age (yr): 56; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212680	2R rightcolon female control S59	Rightcolon Gender: Female; Age (yr): 88; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212682	2T rightcolon female control S61	Rightcolon Gender: Female; Age (yr): 57; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212683	2Y sigmoid male control S62	Sigmoid Gender: Male; Age (yr): 82; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212684	3B sigmoid male control S63	Sigmoid Gender: Male; Age (yr): 48; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212685	3G transversecolon female control S64	Transversecolon Gender: Female; Age (yr): 70; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212688	3M smallbowel male control S67	Smallbowel Gender: Male; Age (yr): 51; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212690	3R sigmoid male control S69	Sigmoid Gender: Male; Age (yr): 67; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212692	3W rectum male control S71	Rectum Gender: Male; Age (yr): 78; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212693	4D rightcolon female control S72	Rightcolon Gender: Female; Age (yr): 58; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212695	4F rectum female control S74	Rectum Gender: Female; Age (yr): 48; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212699	4M ileum male control S78	Ileum Gender: Male; Age (yr): 39; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212710	6E rectosigmoid female control S89	Rectosigmoid Gender: Female; Age (yr): 68; Clinical condition: Control	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM2212714	6O rightcolon_noninflamed male Ulcerative Colitis S93	Rightcolon_noninflamed Gender: Male; Age (yr): 54; Clinical condition: Ulcerative Colitis	Sample-local control marker detected.
Control	Control	GSM2212716	6R colon male control S95	Colon Gender: Male; Age (yr): 4; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212718	6T sigmoid female control S97	Sigmoid Gender: Female; Age (yr): 88; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212721	7C rectosigmoid female control S100	Rectosigmoid Gender: Female; Age (yr): 59; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212726	7R rightcolon female control S105	Rightcolon Gender: Female; Age (yr): 68; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212727	7S leftcolon female control S106	Leftcolon Gender: Female; Age (yr): 69; Clinical condition: Control	Sample-local control marker detected.
Control	Control	GSM2212729	7 transversecolon male control S108	Transversecolon Gender: Male; Age (yr): 79; Clinical condition: Control	Sample-local control marker detected.
12 additional control samples are hidden from this preview.

Use as Discovery Cohort

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Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

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Use as Discovery Cohort