Matching samples

GSE83982 · Differentially expressed Transcribed ultraconserved regions (T-UCRs) in Crohn's disease (CD) comparing to normal controls (NC)

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

3 case / 3 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (6)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM2224838

Uncertain

CD-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • CD-1 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
        • CD-1 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • CD-1 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
          • CD-1 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
        Source metadata
        Source name
        inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients
        Characteristics
        subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pinch biopsy
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM2224838
sample_title: CD-1
source_name: inflammed colon mucosa pinch biopsy sample under colonoscopy  in CD patients
characteristics: subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pinch biopsy

        GSM2224839

        Uncertain

        CD-2

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • CD-2 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
              • CD-2 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • CD-2 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
                • CD-2 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
              Source metadata
              Source name
              inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients
              Characteristics
              subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pinch biopsy
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM2224839
sample_title: CD-2
source_name: inflammed colon mucosa pinch biopsy sample under colonoscopy  in CD patients
characteristics: subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pinch biopsy

              GSM2224840

              Uncertain

              CD-3

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • CD-3 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
                    • CD-3 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • CD-3 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
                      • CD-3 inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pi...
                    Source metadata
                    Source name
                    inflammed colon mucosa pinch biopsy sample under colonoscopy in CD patients
                    Characteristics
                    subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pinch biopsy
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM2224840
sample_title: CD-3
source_name: inflammed colon mucosa pinch biopsy sample under colonoscopy  in CD patients
characteristics: subject status: Crohn's disease (CD) patient; tag: colon; tissue type: inflammed colon mucosa pinch biopsy

                    GSM2224841

                    Uncertain

                    NC-1

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • NC-1 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                          • NC-1 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • NC-1 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                            • NC-1 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                          Source metadata
                          Source name
                          normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers
                          Characteristics
                          subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinch biopsy
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM2224841
sample_title: NC-1
source_name: normal colon mucosa pinch biopsy sample under colonoscopy in  NC volunteers
characteristics: subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinch biopsy

                          GSM2224842

                          Uncertain

                          NC-2

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • NC-2 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                • NC-2 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • NC-2 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                  • NC-2 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                Source metadata
                                Source name
                                normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers
                                Characteristics
                                subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinch biopsy
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM2224842
sample_title: NC-2
source_name: normal colon mucosa pinch biopsy sample under colonoscopy in  NC volunteers
characteristics: subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinch biopsy

                                GSM2224843

                                Uncertain

                                NC-3

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • NC-3 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                      • NC-3 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • NC-3 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                        • NC-3 normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinc...
                                      Source metadata
                                      Source name
                                      normal colon mucosa pinch biopsy sample under colonoscopy in NC volunteers
                                      Characteristics
                                      subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinch biopsy
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM2224843
sample_title: NC-3
source_name: normal colon mucosa pinch biopsy sample under colonoscopy in  NC volunteers
characteristics: subject status: normal controls (NC) volunteer; tag: colon; tissue type: normal colon mucosa pinch biopsy

                                      Excluded samples (0)

                                      No excluded samples.