Matching samples

GSE90607 · Fibrostenotic phenotype of fibroblasts in Crohn's disease is dependent on tissue stiffness and reversed by LOX inhibition

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

16 case / 8 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (24)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM2407582

Uncertain

fibroblast_ileum_stenotic_patientnumber46

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
          • Supported by the indexed evidence.
          • specimen category excludes: Biofluid — Meets requirement
            • Supported by the indexed evidence.
            Source metadata
            Source name
            intestinal fibroblast
            Characteristics
            disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 46; gender: male; age at time of surgery (years): 31.1
            Description
            Not reported
            Indexed organism evidence
            INFERRED · PARENT_INHERITED: Not reported
            Indexed assay evidence
            INFERRED · PARENT_INHERITED: Not reported
            Source
            GEO
            Original indexed metadata
            sample_accession: GSM2407582
            sample_title: fibroblast_ileum_stenotic_patientnumber46
            source_name: intestinal fibroblast
            characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 46; gender: male; age at time of surgery (years): 31.1

            GSM2407583

            Uncertain

            fibroblast_ileum_inflamed_patientnumber46

            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

            Requirements and decision evidence
            • organism: Homo sapiens — Insufficient evidence
              • The required value is not reported.
              • assay type: bulk RNA-seq — Insufficient evidence
                • The required value is not reported.
                • specimen category: Tissue or biopsy — Insufficient evidence
                  • The required value is not reported.
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Meets requirement
                      • Supported by the indexed evidence.
                      Source metadata
                      Source name
                      intestinal fibroblast
                      Characteristics
                      disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 46; gender: male; age at time of surgery (years): 31.1
                      Description
                      Not reported
                      Indexed organism evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Indexed assay evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Source
                      GEO
                      Original indexed metadata
                      sample_accession: GSM2407583
                      sample_title: fibroblast_ileum_inflamed_patientnumber46
                      source_name: intestinal fibroblast
                      characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 46; gender: male; age at time of surgery (years): 31.1

                      GSM2407584

                      Uncertain

                      fibroblast_ileum_normal_patientnumber17

                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                      Requirements and decision evidence
                      • organism: Homo sapiens — Insufficient evidence
                        • The required value is not reported.
                        • assay type: bulk RNA-seq — Insufficient evidence
                          • The required value is not reported.
                          • specimen category: Tissue or biopsy — Insufficient evidence
                            • The required value is not reported.
                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                              • Supported by the indexed evidence.
                              • specimen category excludes: Biofluid — Meets requirement
                                • Supported by the indexed evidence.
                                Source metadata
                                Source name
                                intestinal fibroblast
                                Characteristics
                                disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 17; gender: female; age at time of surgery (years): 52.5
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM2407584
                                sample_title: fibroblast_ileum_normal_patientnumber17
                                source_name: intestinal fibroblast
                                characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 17; gender: female; age at time of surgery (years): 52.5

                                GSM2407585

                                Uncertain

                                fibroblast_ileum_inflamed_patientnumber17

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                        • Supported by the indexed evidence.
                                        • specimen category excludes: Biofluid — Meets requirement
                                          • Supported by the indexed evidence.
                                          Source metadata
                                          Source name
                                          intestinal fibroblast
                                          Characteristics
                                          disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 17; gender: female; age at time of surgery (years): 52.5
                                          Description
                                          Not reported
                                          Indexed organism evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Indexed assay evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Source
                                          GEO
                                          Original indexed metadata
                                          sample_accession: GSM2407585
                                          sample_title: fibroblast_ileum_inflamed_patientnumber17
                                          source_name: intestinal fibroblast
                                          characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 17; gender: female; age at time of surgery (years): 52.5

                                          GSM2407586

                                          Uncertain

                                          fibroblast_ileum_inflamed_patientnumber50

                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                          Requirements and decision evidence
                                          • organism: Homo sapiens — Insufficient evidence
                                            • The required value is not reported.
                                            • assay type: bulk RNA-seq — Insufficient evidence
                                              • The required value is not reported.
                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                • The required value is not reported.
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Meets requirement
                                                    • Supported by the indexed evidence.
                                                    Source metadata
                                                    Source name
                                                    intestinal fibroblast
                                                    Characteristics
                                                    disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 50; gender: male; age at time of surgery (years): 22.7
                                                    Description
                                                    Not reported
                                                    Indexed organism evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Indexed assay evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Source
                                                    GEO
                                                    Original indexed metadata
                                                    sample_accession: GSM2407586
                                                    sample_title: fibroblast_ileum_inflamed_patientnumber50
                                                    source_name: intestinal fibroblast
                                                    characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 50; gender: male; age at time of surgery (years): 22.7

                                                    GSM2407587

                                                    Uncertain

                                                    fibroblast_ileum_normal_patientnumber13

                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                    Requirements and decision evidence
                                                    • organism: Homo sapiens — Insufficient evidence
                                                      • The required value is not reported.
                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                        • The required value is not reported.
                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                          • The required value is not reported.
                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                            • Supported by the indexed evidence.
                                                            • specimen category excludes: Biofluid — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              Source metadata
                                                              Source name
                                                              intestinal fibroblast
                                                              Characteristics
                                                              disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 13; gender: male; age at time of surgery (years): 26.6
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM2407587
                                                              sample_title: fibroblast_ileum_normal_patientnumber13
                                                              source_name: intestinal fibroblast
                                                              characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 13; gender: male; age at time of surgery (years): 26.6

                                                              GSM2407588

                                                              Uncertain

                                                              fibroblast_ileum_inflamed_patientnumber25

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                      • Supported by the indexed evidence.
                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                        • Supported by the indexed evidence.
                                                                        Source metadata
                                                                        Source name
                                                                        intestinal fibroblast
                                                                        Characteristics
                                                                        disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 25; gender: female; age at time of surgery (years): 22.7
                                                                        Description
                                                                        Not reported
                                                                        Indexed organism evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Indexed assay evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Source
                                                                        GEO
                                                                        Original indexed metadata
                                                                        sample_accession: GSM2407588
                                                                        sample_title: fibroblast_ileum_inflamed_patientnumber25
                                                                        source_name: intestinal fibroblast
                                                                        characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 25; gender: female; age at time of surgery (years): 22.7

                                                                        GSM2407589

                                                                        Uncertain

                                                                        fibroblast_ileum_normal_patientnumber46

                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                        Requirements and decision evidence
                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                  • Supported by the indexed evidence.
                                                                                  Source metadata
                                                                                  Source name
                                                                                  intestinal fibroblast
                                                                                  Characteristics
                                                                                  disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 46; gender: male; age at time of surgery (years): 31.1
                                                                                  Description
                                                                                  Not reported
                                                                                  Indexed organism evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Indexed assay evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Source
                                                                                  GEO
                                                                                  Original indexed metadata
                                                                                  sample_accession: GSM2407589
                                                                                  sample_title: fibroblast_ileum_normal_patientnumber46
                                                                                  source_name: intestinal fibroblast
                                                                                  characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 46; gender: male; age at time of surgery (years): 31.1

                                                                                  GSM2407590

                                                                                  Uncertain

                                                                                  fibroblast_ileum_normal_patientnumber41

                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                  Requirements and decision evidence
                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                          • Supported by the indexed evidence.
                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            Source metadata
                                                                                            Source name
                                                                                            intestinal fibroblast
                                                                                            Characteristics
                                                                                            disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 41; gender: female; age at time of surgery (years): 26.4
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM2407590
                                                                                            sample_title: fibroblast_ileum_normal_patientnumber41
                                                                                            source_name: intestinal fibroblast
                                                                                            characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 41; gender: female; age at time of surgery (years): 26.4

                                                                                            GSM2407591

                                                                                            Uncertain

                                                                                            fibroblast_ileum_inflamed_patientnumber41

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                    • Supported by the indexed evidence.
                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                      • Supported by the indexed evidence.
                                                                                                      Source metadata
                                                                                                      Source name
                                                                                                      intestinal fibroblast
                                                                                                      Characteristics
                                                                                                      disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 41; gender: female; age at time of surgery (years): 26.4
                                                                                                      Description
                                                                                                      Not reported
                                                                                                      Indexed organism evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Indexed assay evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Source
                                                                                                      GEO
                                                                                                      Original indexed metadata
                                                                                                      sample_accession: GSM2407591
                                                                                                      sample_title: fibroblast_ileum_inflamed_patientnumber41
                                                                                                      source_name: intestinal fibroblast
                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 41; gender: female; age at time of surgery (years): 26.4

                                                                                                      GSM2407592

                                                                                                      Uncertain

                                                                                                      fibroblast_ileum_stenotic_patientnumber41

                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                      Requirements and decision evidence
                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                • Supported by the indexed evidence.
                                                                                                                Source metadata
                                                                                                                Source name
                                                                                                                intestinal fibroblast
                                                                                                                Characteristics
                                                                                                                disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 41; gender: female; age at time of surgery (years): 26.4
                                                                                                                Description
                                                                                                                Not reported
                                                                                                                Indexed organism evidence
                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                Indexed assay evidence
                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                Source
                                                                                                                GEO
                                                                                                                Original indexed metadata
                                                                                                                sample_accession: GSM2407592
                                                                                                                sample_title: fibroblast_ileum_stenotic_patientnumber41
                                                                                                                source_name: intestinal fibroblast
                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 41; gender: female; age at time of surgery (years): 26.4

                                                                                                                GSM2407593

                                                                                                                Uncertain

                                                                                                                fibroblast_ileum_stenotic_patientnumber47

                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                Requirements and decision evidence
                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                        • Supported by the indexed evidence.
                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          intestinal fibroblast
                                                                                                                          Characteristics
                                                                                                                          disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 47; gender: female; age at time of surgery (years): 31.7
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM2407593
                                                                                                                          sample_title: fibroblast_ileum_stenotic_patientnumber47
                                                                                                                          source_name: intestinal fibroblast
                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 47; gender: female; age at time of surgery (years): 31.7

                                                                                                                          GSM2407594

                                                                                                                          Uncertain

                                                                                                                          fibroblast_ileum_stenotic_patientnumber25

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                    Source metadata
                                                                                                                                    Source name
                                                                                                                                    intestinal fibroblast
                                                                                                                                    Characteristics
                                                                                                                                    disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 25; gender: female; age at time of surgery (years): 22.7
                                                                                                                                    Description
                                                                                                                                    Not reported
                                                                                                                                    Indexed organism evidence
                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                    Indexed assay evidence
                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                    Source
                                                                                                                                    GEO
                                                                                                                                    Original indexed metadata
                                                                                                                                    sample_accession: GSM2407594
                                                                                                                                    sample_title: fibroblast_ileum_stenotic_patientnumber25
                                                                                                                                    source_name: intestinal fibroblast
                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 25; gender: female; age at time of surgery (years): 22.7

                                                                                                                                    GSM2407595

                                                                                                                                    Uncertain

                                                                                                                                    fibroblast_ileum_normal_patientnumber23

                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                    Requirements and decision evidence
                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                              Source metadata
                                                                                                                                              Source name
                                                                                                                                              intestinal fibroblast
                                                                                                                                              Characteristics
                                                                                                                                              disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 23; gender: female; age at time of surgery (years): 28.5
                                                                                                                                              Description
                                                                                                                                              Not reported
                                                                                                                                              Indexed organism evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Indexed assay evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Source
                                                                                                                                              GEO
                                                                                                                                              Original indexed metadata
                                                                                                                                              sample_accession: GSM2407595
                                                                                                                                              sample_title: fibroblast_ileum_normal_patientnumber23
                                                                                                                                              source_name: intestinal fibroblast
                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 23; gender: female; age at time of surgery (years): 28.5

                                                                                                                                              GSM2407596

                                                                                                                                              Uncertain

                                                                                                                                              fibroblast_ileum_stenotic_patientnumber13

                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                              Requirements and decision evidence
                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        intestinal fibroblast
                                                                                                                                                        Characteristics
                                                                                                                                                        disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 13; gender: male; age at time of surgery (years): 26.6
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM2407596
                                                                                                                                                        sample_title: fibroblast_ileum_stenotic_patientnumber13
                                                                                                                                                        source_name: intestinal fibroblast
                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 13; gender: male; age at time of surgery (years): 26.6

                                                                                                                                                        GSM2407597

                                                                                                                                                        Uncertain

                                                                                                                                                        fibroblast_ileum_stenotic_patientnumber23

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                  Source metadata
                                                                                                                                                                  Source name
                                                                                                                                                                  intestinal fibroblast
                                                                                                                                                                  Characteristics
                                                                                                                                                                  disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 23; gender: female; age at time of surgery (years): 28.5
                                                                                                                                                                  Description
                                                                                                                                                                  Not reported
                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Source
                                                                                                                                                                  GEO
                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                  sample_accession: GSM2407597
                                                                                                                                                                  sample_title: fibroblast_ileum_stenotic_patientnumber23
                                                                                                                                                                  source_name: intestinal fibroblast
                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 23; gender: female; age at time of surgery (years): 28.5

                                                                                                                                                                  GSM2407598

                                                                                                                                                                  Uncertain

                                                                                                                                                                  fibroblast_ileum_normal_patientnumber25

                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                            Source metadata
                                                                                                                                                                            Source name
                                                                                                                                                                            intestinal fibroblast
                                                                                                                                                                            Characteristics
                                                                                                                                                                            disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 25; gender: female; age at time of surgery (years): 22.7
                                                                                                                                                                            Description
                                                                                                                                                                            Not reported
                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                            Source
                                                                                                                                                                            GEO
                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                            sample_accession: GSM2407598
                                                                                                                                                                            sample_title: fibroblast_ileum_normal_patientnumber25
                                                                                                                                                                            source_name: intestinal fibroblast
                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 25; gender: female; age at time of surgery (years): 22.7

                                                                                                                                                                            GSM2407599

                                                                                                                                                                            Uncertain

                                                                                                                                                                            fibroblast_ileum_normal_patientnumber50

                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      intestinal fibroblast
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 50; gender: male; age at time of surgery (years): 22.7
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM2407599
                                                                                                                                                                                      sample_title: fibroblast_ileum_normal_patientnumber50
                                                                                                                                                                                      source_name: intestinal fibroblast
                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 50; gender: male; age at time of surgery (years): 22.7

                                                                                                                                                                                      GSM2407600

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      fibroblast_ileum_inflamed_patientnumber13

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                Source name
                                                                                                                                                                                                intestinal fibroblast
                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 13; gender: male; age at time of surgery (years): 26.6
                                                                                                                                                                                                Description
                                                                                                                                                                                                Not reported
                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                Source
                                                                                                                                                                                                GEO
                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                sample_accession: GSM2407600
                                                                                                                                                                                                sample_title: fibroblast_ileum_inflamed_patientnumber13
                                                                                                                                                                                                source_name: intestinal fibroblast
                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 13; gender: male; age at time of surgery (years): 26.6

                                                                                                                                                                                                GSM2407601

                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                fibroblast_ileum_stenotic_patientnumber17

                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                          Source name
                                                                                                                                                                                                          intestinal fibroblast
                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 17; gender: female; age at time of surgery (years): 52.5
                                                                                                                                                                                                          Description
                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                          Source
                                                                                                                                                                                                          GEO
                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                          sample_accession: GSM2407601
                                                                                                                                                                                                          sample_title: fibroblast_ileum_stenotic_patientnumber17
                                                                                                                                                                                                          source_name: intestinal fibroblast
                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 17; gender: female; age at time of surgery (years): 52.5

                                                                                                                                                                                                          GSM2407602

                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                          fibroblast_ileum_inflamed_patientnumber47

                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    intestinal fibroblast
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 47; gender: female; age at time of surgery (years): 31.7
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM2407602
                                                                                                                                                                                                                    sample_title: fibroblast_ileum_inflamed_patientnumber47
                                                                                                                                                                                                                    source_name: intestinal fibroblast
                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 47; gender: female; age at time of surgery (years): 31.7

                                                                                                                                                                                                                    GSM2407603

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    fibroblast_ileum_stenotic_patientnumber50

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                              intestinal fibroblast
                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 50; gender: male; age at time of surgery (years): 22.7
                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                              sample_accession: GSM2407603
                                                                                                                                                                                                                              sample_title: fibroblast_ileum_stenotic_patientnumber50
                                                                                                                                                                                                                              source_name: intestinal fibroblast
                                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 50; gender: male; age at time of surgery (years): 22.7

                                                                                                                                                                                                                              GSM2407604

                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                              fibroblast_ileum_normal_patientnumber47

                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                        intestinal fibroblast
                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 47; gender: female; age at time of surgery (years): 31.7
                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                        sample_accession: GSM2407604
                                                                                                                                                                                                                                        sample_title: fibroblast_ileum_normal_patientnumber47
                                                                                                                                                                                                                                        source_name: intestinal fibroblast
                                                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 47; gender: female; age at time of surgery (years): 31.7

                                                                                                                                                                                                                                        GSM2407605

                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                        fibroblast_ileum_inflamed_patientnumber23

                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  intestinal fibroblast
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 23; gender: female; age at time of surgery (years): 28.5
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM2407605
                                                                                                                                                                                                                                                  sample_title: fibroblast_ileum_inflamed_patientnumber23
                                                                                                                                                                                                                                                  source_name: intestinal fibroblast
                                                                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 23; gender: female; age at time of surgery (years): 28.5

                                                                                                                                                                                                                                                  Excluded samples (0)

                                                                                                                                                                                                                                                  No excluded samples.