These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
fibroblast_ileum_stenotic_patientnumber46
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 46; gender: male; age at time of surgery (years): 31.1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407582
sample_title: fibroblast_ileum_stenotic_patientnumber46
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 46; gender: male; age at time of surgery (years): 31.1
fibroblast_ileum_inflamed_patientnumber46
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 46; gender: male; age at time of surgery (years): 31.1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407583
sample_title: fibroblast_ileum_inflamed_patientnumber46
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 46; gender: male; age at time of surgery (years): 31.1
fibroblast_ileum_normal_patientnumber17
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 17; gender: female; age at time of surgery (years): 52.5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407584
sample_title: fibroblast_ileum_normal_patientnumber17
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 17; gender: female; age at time of surgery (years): 52.5
fibroblast_ileum_inflamed_patientnumber17
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 17; gender: female; age at time of surgery (years): 52.5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407585
sample_title: fibroblast_ileum_inflamed_patientnumber17
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 17; gender: female; age at time of surgery (years): 52.5
fibroblast_ileum_inflamed_patientnumber50
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 50; gender: male; age at time of surgery (years): 22.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407586
sample_title: fibroblast_ileum_inflamed_patientnumber50
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 50; gender: male; age at time of surgery (years): 22.7
fibroblast_ileum_normal_patientnumber13
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 13; gender: male; age at time of surgery (years): 26.6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407587
sample_title: fibroblast_ileum_normal_patientnumber13
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 13; gender: male; age at time of surgery (years): 26.6
fibroblast_ileum_inflamed_patientnumber25
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 25; gender: female; age at time of surgery (years): 22.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407588
sample_title: fibroblast_ileum_inflamed_patientnumber25
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 25; gender: female; age at time of surgery (years): 22.7
fibroblast_ileum_normal_patientnumber46
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 46; gender: male; age at time of surgery (years): 31.1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407589
sample_title: fibroblast_ileum_normal_patientnumber46
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 46; gender: male; age at time of surgery (years): 31.1
fibroblast_ileum_normal_patientnumber41
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 41; gender: female; age at time of surgery (years): 26.4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407590
sample_title: fibroblast_ileum_normal_patientnumber41
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 41; gender: female; age at time of surgery (years): 26.4
fibroblast_ileum_inflamed_patientnumber41
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 41; gender: female; age at time of surgery (years): 26.4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407591
sample_title: fibroblast_ileum_inflamed_patientnumber41
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 41; gender: female; age at time of surgery (years): 26.4
fibroblast_ileum_stenotic_patientnumber41
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 41; gender: female; age at time of surgery (years): 26.4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407592
sample_title: fibroblast_ileum_stenotic_patientnumber41
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 41; gender: female; age at time of surgery (years): 26.4
fibroblast_ileum_stenotic_patientnumber47
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 47; gender: female; age at time of surgery (years): 31.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407593
sample_title: fibroblast_ileum_stenotic_patientnumber47
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 47; gender: female; age at time of surgery (years): 31.7
fibroblast_ileum_stenotic_patientnumber25
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 25; gender: female; age at time of surgery (years): 22.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407594
sample_title: fibroblast_ileum_stenotic_patientnumber25
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 25; gender: female; age at time of surgery (years): 22.7
fibroblast_ileum_normal_patientnumber23
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 23; gender: female; age at time of surgery (years): 28.5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407595
sample_title: fibroblast_ileum_normal_patientnumber23
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 23; gender: female; age at time of surgery (years): 28.5
fibroblast_ileum_stenotic_patientnumber13
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 13; gender: male; age at time of surgery (years): 26.6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407596
sample_title: fibroblast_ileum_stenotic_patientnumber13
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 13; gender: male; age at time of surgery (years): 26.6
fibroblast_ileum_stenotic_patientnumber23
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 23; gender: female; age at time of surgery (years): 28.5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407597
sample_title: fibroblast_ileum_stenotic_patientnumber23
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 23; gender: female; age at time of surgery (years): 28.5
fibroblast_ileum_normal_patientnumber25
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 25; gender: female; age at time of surgery (years): 22.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407598
sample_title: fibroblast_ileum_normal_patientnumber25
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 25; gender: female; age at time of surgery (years): 22.7
fibroblast_ileum_normal_patientnumber50
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 50; gender: male; age at time of surgery (years): 22.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407599
sample_title: fibroblast_ileum_normal_patientnumber50
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 50; gender: male; age at time of surgery (years): 22.7
fibroblast_ileum_inflamed_patientnumber13
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 13; gender: male; age at time of surgery (years): 26.6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407600
sample_title: fibroblast_ileum_inflamed_patientnumber13
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 13; gender: male; age at time of surgery (years): 26.6
fibroblast_ileum_stenotic_patientnumber17
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 17; gender: female; age at time of surgery (years): 52.5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407601
sample_title: fibroblast_ileum_stenotic_patientnumber17
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 17; gender: female; age at time of surgery (years): 52.5
fibroblast_ileum_inflamed_patientnumber47
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 47; gender: female; age at time of surgery (years): 31.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407602
sample_title: fibroblast_ileum_inflamed_patientnumber47
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 47; gender: female; age at time of surgery (years): 31.7
fibroblast_ileum_stenotic_patientnumber50
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 50; gender: male; age at time of surgery (years): 22.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407603
sample_title: fibroblast_ileum_stenotic_patientnumber50
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: stenotic; patient number: 50; gender: male; age at time of surgery (years): 22.7
fibroblast_ileum_normal_patientnumber47
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 47; gender: female; age at time of surgery (years): 31.7
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407604
sample_title: fibroblast_ileum_normal_patientnumber47
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: normal; patient number: 47; gender: female; age at time of surgery (years): 31.7
fibroblast_ileum_inflamed_patientnumber23
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- intestinal fibroblast
- Characteristics
- disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 23; gender: female; age at time of surgery (years): 28.5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2407605
sample_title: fibroblast_ileum_inflamed_patientnumber23
source_name: intestinal fibroblast
characteristics: disease: Crohn's disease; tissue: ileum; cell type: fibroblast; phenotype: inflamed; patient number: 23; gender: female; age at time of surgery (years): 28.5