Matching samples

GSE92472 · Expression of long non-coding RNAs in autoimmunity and linkage to enhancer function and autoimmune disease risk genetic variants

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (15)

GSM2430372

Excluded

Ulcerative colitis

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Does not meet requirement
        • The reported value differs from the selected requirement.
        • Ulcerative colitis peripheral whole blood draw type: Ulcerative colitis
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Does not meet requirement
          • The reported value differs from the selected requirement.
          • Ulcerative colitis peripheral whole blood draw type: Ulcerative colitis
        Source metadata
        Source name
        peripheral whole blood draw
        Characteristics
        type: Ulcerative colitis
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM2430372
sample_title: Ulcerative colitis
source_name: peripheral whole blood draw
characteristics: type: Ulcerative colitis

        GSM2430373

        Excluded

        Crohn's disease

        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Does not meet requirement
              • The reported value differs from the selected requirement.
              • Crohn's disease peripheral whole blood draw type: Crohn's disease
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Does not meet requirement
                • The reported value differs from the selected requirement.
                • Crohn's disease peripheral whole blood draw type: Crohn's disease
              Source metadata
              Source name
              peripheral whole blood draw
              Characteristics
              type: Crohn's disease
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM2430373
sample_title: Crohn's disease
source_name: peripheral whole blood draw
characteristics: type: Crohn's disease

              GSM2430374

              Excluded

              Irritable bowel syndrome

              Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

              Requirements and decision evidence
              • Case: organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • Case: assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • Case: specimen category: Tissue or biopsy — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • Irritable bowel syndrome peripheral whole blood draw type: Irritable bowel syndrome
                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • Case: specimen category excludes: Biofluid — Does not meet requirement
                      • The reported value differs from the selected requirement.
                      • Irritable bowel syndrome peripheral whole blood draw type: Irritable bowel syndrome
                    • Control: organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • Control: specimen category: Tissue or biopsy — Does not meet requirement
                          • The reported value differs from the selected requirement.
                          • Irritable bowel syndrome peripheral whole blood draw type: Irritable bowel syndrome
                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • Control: specimen category excludes: Biofluid — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • Irritable bowel syndrome peripheral whole blood draw type: Irritable bowel syndrome
                          Source metadata
                          Source name
                          peripheral whole blood draw
                          Characteristics
                          type: Irritable bowel syndrome
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM2430374
sample_title: Irritable bowel syndrome
source_name: peripheral whole blood draw
characteristics: type: Irritable bowel syndrome

                          GSM2430375

                          Excluded

                          Celiac disease

                          Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                          Requirements and decision evidence
                          • Case: organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • Celiac disease peripheral whole blood draw type: Celiac disease
                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • Case: specimen category excludes: Biofluid — Does not meet requirement
                                  • The reported value differs from the selected requirement.
                                  • Celiac disease peripheral whole blood draw type: Celiac disease
                                • Control: organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                      • The reported value differs from the selected requirement.
                                      • Celiac disease peripheral whole blood draw type: Celiac disease
                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • Control: specimen category excludes: Biofluid — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • Celiac disease peripheral whole blood draw type: Celiac disease
                                      Source metadata
                                      Source name
                                      peripheral whole blood draw
                                      Characteristics
                                      type: Celiac disease
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM2430375
sample_title: Celiac disease
source_name: peripheral whole blood draw
characteristics: type: Celiac disease

                                      GSM2430376

                                      Excluded

                                      Fibromyalgia syndrome

                                      Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                      Requirements and decision evidence
                                      • Case: organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • Case: assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • Fibromyalgia syndrome peripheral whole blood draw type: Fibromyalgia syndrome
                                          • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • Case: specimen category excludes: Biofluid — Does not meet requirement
                                              • The reported value differs from the selected requirement.
                                              • Fibromyalgia syndrome peripheral whole blood draw type: Fibromyalgia syndrome
                                            • Control: organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                  • The reported value differs from the selected requirement.
                                                  • Fibromyalgia syndrome peripheral whole blood draw type: Fibromyalgia syndrome
                                                • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                    • The reported value differs from the selected requirement.
                                                    • Fibromyalgia syndrome peripheral whole blood draw type: Fibromyalgia syndrome
                                                  Source metadata
                                                  Source name
                                                  peripheral whole blood draw
                                                  Characteristics
                                                  type: Fibromyalgia syndrome
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM2430376
sample_title: Fibromyalgia syndrome
source_name: peripheral whole blood draw
characteristics: type: Fibromyalgia syndrome

                                                  GSM2430377

                                                  Excluded

                                                  CIS-MS

                                                  Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                  Requirements and decision evidence
                                                  • Case: organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                        • The reported value differs from the selected requirement.
                                                        • CIS-MS peripheral whole blood draw type: CIS-MS
                                                      • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                          • The reported value differs from the selected requirement.
                                                          • CIS-MS peripheral whole blood draw type: CIS-MS
                                                        • Control: organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                              • The reported value differs from the selected requirement.
                                                              • CIS-MS peripheral whole blood draw type: CIS-MS
                                                            • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                • The reported value differs from the selected requirement.
                                                                • CIS-MS peripheral whole blood draw type: CIS-MS
                                                              Source metadata
                                                              Source name
                                                              peripheral whole blood draw
                                                              Characteristics
                                                              type: CIS-MS
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM2430377
sample_title: CIS-MS
source_name: peripheral whole blood draw
characteristics: type: CIS-MS

                                                              GSM2430378

                                                              Excluded

                                                              MS-NAÏVE

                                                              Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                              Requirements and decision evidence
                                                              • Case: organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • MS-NAÏVE peripheral whole blood draw type: MS-NAIVE
                                                                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                      • The reported value differs from the selected requirement.
                                                                      • MS-NAÏVE peripheral whole blood draw type: MS-NAIVE
                                                                    • Control: organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                          • The reported value differs from the selected requirement.
                                                                          • MS-NAÏVE peripheral whole blood draw type: MS-NAIVE
                                                                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • MS-NAÏVE peripheral whole blood draw type: MS-NAIVE
                                                                          Source metadata
                                                                          Source name
                                                                          peripheral whole blood draw
                                                                          Characteristics
                                                                          type: MS-NAIVE
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM2430378
sample_title: MS-NAÏVE
source_name: peripheral whole blood draw
characteristics: type: MS-NAIVE

                                                                          GSM2430379

                                                                          Excluded

                                                                          MS-EST

                                                                          Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                          Requirements and decision evidence
                                                                          • Case: organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • MS-EST peripheral whole blood draw type: MS-EST
                                                                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                  • The reported value differs from the selected requirement.
                                                                                  • MS-EST peripheral whole blood draw type: MS-EST
                                                                                • Control: organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                      • The reported value differs from the selected requirement.
                                                                                      • MS-EST peripheral whole blood draw type: MS-EST
                                                                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • MS-EST peripheral whole blood draw type: MS-EST
                                                                                      Source metadata
                                                                                      Source name
                                                                                      peripheral whole blood draw
                                                                                      Characteristics
                                                                                      type: MS-EST
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM2430379
sample_title: MS-EST
source_name: peripheral whole blood draw
characteristics: type: MS-EST

                                                                                      GSM2430380

                                                                                      Excluded

                                                                                      Healthy control subject

                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • Healthy control subject peripheral whole blood draw type: Healthy control subject
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                              • The reported value differs from the selected requirement.
                                                                                              • Healthy control subject peripheral whole blood draw type: Healthy control subject
                                                                                            Source metadata
                                                                                            Source name
                                                                                            peripheral whole blood draw
                                                                                            Characteristics
                                                                                            type: Healthy control subject
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM2430380
sample_title: Healthy control subject
source_name: peripheral whole blood draw
characteristics: type: Healthy control subject

                                                                                            GSM2430381

                                                                                            Excluded

                                                                                            RA-MTX (not receiving methotrexate)

                                                                                            Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • Case: organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                  • The reported value differs from the selected requirement.
                                                                                                  • RA-MTX (not receiving methotrexate) peripheral whole blood draw type: RA-MTX (not receiving methotrexate)
                                                                                                • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • RA-MTX (not receiving methotrexate) peripheral whole blood draw type: RA-MTX (not receiving methotrexate)
                                                                                                  • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • RA-MTX (not receiving methotrexate) peripheral whole blood draw type: RA-MTX (not receiving methotrexate)
                                                                                                      • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                          • The reported value differs from the selected requirement.
                                                                                                          • RA-MTX (not receiving methotrexate) peripheral whole blood draw type: RA-MTX (not receiving methotrexate)
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        peripheral whole blood draw
                                                                                                        Characteristics
                                                                                                        type: RA-MTX (not receiving methotrexate)
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM2430381
sample_title: RA-MTX (not receiving methotrexate)
source_name: peripheral whole blood draw
characteristics: type: RA-MTX (not receiving methotrexate)

                                                                                                        GSM2430382

                                                                                                        Excluded

                                                                                                        RA+MTX (receiving methotrexate)

                                                                                                        Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                              • The reported value differs from the selected requirement.
                                                                                                              • RA+MTX (receiving methotrexate) peripheral whole blood draw type: RA+MTX (receiving methotrexate)
                                                                                                            • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • RA+MTX (receiving methotrexate) peripheral whole blood draw type: RA+MTX (receiving methotrexate)
                                                                                                              • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • RA+MTX (receiving methotrexate) peripheral whole blood draw type: RA+MTX (receiving methotrexate)
                                                                                                                  • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                      • RA+MTX (receiving methotrexate) peripheral whole blood draw type: RA+MTX (receiving methotrexate)
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    peripheral whole blood draw
                                                                                                                    Characteristics
                                                                                                                    type: RA+MTX (receiving methotrexate)
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM2430382
sample_title: RA+MTX (receiving methotrexate)
source_name: peripheral whole blood draw
characteristics: type: RA+MTX (receiving methotrexate)

                                                                                                                    GSM2430383

                                                                                                                    Excluded

                                                                                                                    Systemic lupus erythematosus

                                                                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                          • Systemic lupus erythematosus peripheral whole blood draw type: Systemic lupus erythematosus
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                            • Systemic lupus erythematosus peripheral whole blood draw type: Systemic lupus erythematosus
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          peripheral whole blood draw
                                                                                                                          Characteristics
                                                                                                                          type: Systemic lupus erythematosus
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM2430383
sample_title: Systemic lupus erythematosus
source_name: peripheral whole blood draw
characteristics: type: Systemic lupus erythematosus

                                                                                                                          GSM2430384

                                                                                                                          Excluded

                                                                                                                          Psoriasis

                                                                                                                          Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                • Psoriasis peripheral whole blood draw type: Psoriasis
                                                                                                                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                  • Psoriasis peripheral whole blood draw type: Psoriasis
                                                                                                                                • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                      • Psoriasis peripheral whole blood draw type: Psoriasis
                                                                                                                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • Psoriasis peripheral whole blood draw type: Psoriasis
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      peripheral whole blood draw
                                                                                                                                      Characteristics
                                                                                                                                      type: Psoriasis
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM2430384
sample_title: Psoriasis
source_name: peripheral whole blood draw
characteristics: type: Psoriasis

                                                                                                                                      GSM2430385

                                                                                                                                      Excluded

                                                                                                                                      Psoriatic arthritis

                                                                                                                                      Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • Psoriatic arthritis peripheral whole blood draw type: Psoriatic arthritis
                                                                                                                                          • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                              • Psoriatic arthritis peripheral whole blood draw type: Psoriatic arthritis
                                                                                                                                            • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                  • Psoriatic arthritis peripheral whole blood draw type: Psoriatic arthritis
                                                                                                                                                • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • Psoriatic arthritis peripheral whole blood draw type: Psoriatic arthritis
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  peripheral whole blood draw
                                                                                                                                                  Characteristics
                                                                                                                                                  type: Psoriatic arthritis
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM2430385
sample_title: Psoriatic arthritis
source_name: peripheral whole blood draw
characteristics: type: Psoriatic arthritis

                                                                                                                                                  GSM2430386

                                                                                                                                                  Excluded

                                                                                                                                                  Sjogren's syndrome

                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                        • Sjogren's syndrome peripheral whole blood draw type: Sjogren's syndrome
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                          • Sjogren's syndrome peripheral whole blood draw type: Sjogren's syndrome
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        peripheral whole blood draw
                                                                                                                                                        Characteristics
                                                                                                                                                        type: Sjogren's syndrome
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM2430386
sample_title: Sjogren's syndrome
source_name: peripheral whole blood draw
characteristics: type: Sjogren's syndrome